Identification and characterization of miR-31 potential targets by RNA-seq

Fish and Shellfish Immunology

Volumn 51, Issue , 2016, Pages 26-32

  Xueping, Sun ^a   Zhimeng, Lv ^a   Chenghua, Li ^a   Meng, Lu ^a   Pengjuan, Zhang ^a   Weiwei, Zhang ^a  

^a NINGBO UNIVERSITY   (China)

Author keywords

Apostichopus japonicus; Expression profile; MiR 31; RNA Seq

Indexed keywords

MICRORNA; TRANSCRIPTOME;

ANIMAL; GENETICS; IMMUNOLOGY; METABOLISM; REAL TIME POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; STICHOPUS;

ANIMALS; MICRORNAS; REAL-TIME POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, RNA; STICHOPUS; TRANSCRIPTOME;

EID: 84958824537     PISSN: 10504648     EISSN: 10959947     Source Type: Journal    
DOI: 10.1016/j.fsi.2016.02.014     Document Type: Article

References (25)

1. Deng H., He C., Zhou Z., Liu C., Tan K., Wang N., et al. Isolation and pathogenicity of pathogens from skin ulceration disease and viscera ejection syndrome of the sea cucumber Apostichopus japonicus. Aquaculture 2009, 287:18-27.
2. Zhang C., Wang Y., Rong X. Isolation and identification of causative pathogen for skin ulcerative syndrome in Apostichopus japonicus. J. Fish. China 2006, 30:118-123. (in Chinese).
3. Wang P., Chang Y., Yu J., Li C., Xu G. Acute peristome edema disease in juvenile and adult sea cucumbers Apostichopus japonicus (Selenka) reared in North China. J. Invertebr. Pathol. 2007, 96:11-17.
4. Liu H., Zheng F., Sun X., Hong X., Dong S., Wang B., et al. Identification of the pathogens associated with skin ulceration and peristome tumescence in cultured sea cucumbers Apostichopus japonicus (Selenka). J. Invertebr. Pathol. 2010, 105:236-242.
5. Liu X., Zhou Y., Yang H., Ru S. Eelgrass detritus as a food source for the sea cucumber Apostichopus japonicus Selenka (Echinidermata: Holothuroidea) in coastal waters of North China: an experimental study in flow-through systems. PLoS One 2013, 8:e58293.
6. Sun H., Zhou Z., Dong Y., Yang A., Jiang B., Gao S., et al. Identification and expression analysis of two Toll-like receptor genes from sea cucumber (Apostichopus japonicus). Fish. Shellfish Immunol. 2013, 34:147-158.
7. Lu Y., Li C., Zhang P., Shao Y., Su X., Li Y., et al. Two adaptor molecules of MyD88 and TRAF6 in Apostichopus japonicus Toll signaling cascade: molecular cloning and expression analysis. Dev. Comp. Immunol. 2013, 41:498-504.
8. Lu Y., Li C., Zhang P., Wang D., Su X., Jin C., et al. Characterization of two negative regulators of the Toll-like receptor pathway in Apostichopus japonicus: inhibitor of NF-κB and Toll-interacting protein. Fish. Shellfish Immunol. 2013, 35:1663-1669.
9. Wei X., Liu X., Yang J., Wang S., Sun G., Yang J. Critical roles of sea cucumber C-type lectin in non-self recognition and bacterial clearance. Fish. Shellfish Immunol. 2015, 45:791-799.
10. Shao Y., Li C., Che Z., Zhang P., Zhang W., Duan X., et al. Cloning and characterization of two lipopolysaccharide-binding protein/bactericidal permeability-increasing protein (LBP/BPI) genes from the sea cucumber Apostichopus japonicus with diversified function in modulating ROS production. Dev. Comp. Immunol. 2015, 52:88-97.
11. Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
12. Li C., Feng W., Qiu L., Xia C., Su X., Jin C., et al. Characterization of skin ulceration syndrome associated microRNAs in sea cucumber Apostichopus japonicus by deep sequencing. Fish. Shellfish Immunol. 2012, 33:436-441.
13. Valastyan S., Weinberg R.A. miR-31: a crucial overseer of tumor metastasis and other emerging roles. Cell Cycle 2010, 9:2124-2129.
14. Olaru A.V., Selaru F.M., Mori Y., Vazquez C., David S., Paun B., et al. Dynamic changes in the expression of MicroRNA-31 during inflammatory bowel disease-associated neoplastic transformation. Inflamm. Bowel. Dis. 2011, 17:221-231.
15. Suarez Y., Wang C., Manes T.D., Pober J.S. Cutting edge: TNF-induced microRNAs regulate TNF-induced expression of E-selectin and intercellular adhesion molecule-1 on human endothelial cells: feedback control of inflammation. J. Immunol. 2010, 184:21-25.
16. Lu M., Zhang P., Li C., Zhang W., Jin C., Han Q. MiR-31 modulates coelomocytes ROS production via targeting p105 in Vibrio splendidus challenged sea cucumber Apostichopus japonicus in vitro and in vivo. Fish. Shellfish Immunol. 2015, 45:293-299.
17. Krek A., Grün D., Poy M.N., Wolf R., Rosenberg L., et al. Combinatorial microRNA target predictions. Nat. Genet. 2005, 37:495-500.
18. Zhang P., Li C., Zhu L., Su X., Li Y., Jin C., et al. De novo assembly of the sea cucumber Apostichopus japonicus hemocytes transcriptome to identify miRNA targets associated with skin ulceration syndrome. PLoS One 2013, 8:e73506.
19. Zhang P., Li C., Shao Y., Chen X., Li Y., Su X., et al. Identification and characterization of miR-92a and its targets modulating Vibrio splendidus challenged Apostichopus japonicus. Fish. Shellfish Immunol. 2014, 38:383-388.
20. Zhou H., Rigoutsos I. MiR-103a-3p targets the 5'UTR of GPRC5A in pancreatic cells. RNA 2014, 20:1431-1439.
21. Quann K., Jing Y., Rigoutsos I. Post-transcriptional regulation of BRCA1 through its coding sequence by the miR-15/107 group of miRNAs. Front. Genet. 2015, 6:242.
22. Krek A., Grün D., Poy M.N., Wolf R., Rosenberg L., et al. Combinatorial microRNA target predictions. Nat. Genet. 2005, 37(5):495-500.
23. Rajewsky N. microRNA target predictions in animals. Nat. Genet. 2006, 38:S8-S13.
24. Lv Z., Li C., Zhang P., Wang Z., Zhang W., Jin C. miR-200 modulates coelomocytes antibacterial activities and LPS priming via targeting tollip in Apostichopus japonicas. Fish. Shellfish Immunol. 2015, 45(2):431-436.
25. Lu M., Zhang P., Li C., Lv Z., Zhang W., Jin C. miRNA-133 augments coelomocyte phagocytosis in bacteria-challenged Apostichopus japonicus via targeting the TLR component of IRAK-1 in vitro and in vivo. Sci. Rep. 2015, 5:12608.