-
1
-
-
84921329937
-
The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts
-
P.H. Oliveira, M. Touchon, and E.P.C. Rocha The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts Nucleic Acids Res. 42 2014 10618 10631
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 10618-10631
-
-
Oliveira, P.H.1
Touchon, M.2
Rocha, E.P.C.3
-
2
-
-
0036146923
-
2001 Fred Griffith Review Lecture. Immigration control of DNA in bacteria: Self versus non-self
-
N.E. Murray 2001 Fred Griffith Review Lecture. Immigration control of DNA in bacteria: self versus non-self Microbiology 148 2002 3 20
-
(2002)
Microbiology
, vol.148
, pp. 3-20
-
-
Murray, N.E.1
-
3
-
-
0001875393
-
Host specificity of DNA produced by Escherichia coli. I. Host controlled modification of bacteriophage lambda
-
W. Arber, and D. Dussoix Host specificity of DNA produced by Escherichia coli. I. Host controlled modification of bacteriophage lambda J. Mol. Biol. 5 1962 18 36
-
(1962)
J. Mol. Biol.
, vol.5
, pp. 18-36
-
-
Arber, W.1
Dussoix, D.2
-
4
-
-
0026600016
-
Statistical analyses of counts and distributions of restriction sites in DNA sequences
-
S. Karlin, C. Burge, and A.M. Campbell Statistical analyses of counts and distributions of restriction sites in DNA sequences Nucleic Acids Res. 20 1992 1363 1370
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 1363-1370
-
-
Karlin, S.1
Burge, C.2
Campbell, A.M.3
-
5
-
-
0030740993
-
Avoidance of palindromic words in bacterial and archaeal genomes: A close connection with restriction enzymes
-
M.S. Gelfand, and E.V. Koonin Avoidance of palindromic words in bacterial and archaeal genomes: a close connection with restriction enzymes Nucleic Acids Res. 25 1997 2430 2439
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 2430-2439
-
-
Gelfand, M.S.1
Koonin, E.V.2
-
6
-
-
0034828366
-
Evolutionary role of restriction/modification systems as revealed by comparative genome analysis
-
E.P.C. Rocha, A. Danchin, and A. Viari Evolutionary role of restriction/modification systems as revealed by comparative genome analysis Genome Res. 11 2001 946 958
-
(2001)
Genome Res.
, vol.11
, pp. 946-958
-
-
Rocha, E.P.C.1
Danchin, A.2
Viari, A.3
-
7
-
-
0034917221
-
Determination of bias in the relative abundance of oligonucleotides in DNA sequences
-
J. Elhai Determination of bias in the relative abundance of oligonucleotides in DNA sequences J. Comput. Biol. 8 2001 151 175
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 151-175
-
-
Elhai, J.1
-
8
-
-
84859847163
-
Evolutionary dynamics of restriction site avoidance
-
L. Qian, and E. Kussell Evolutionary dynamics of restriction site avoidance Phys. Rev. Lett. 108 2012 158105
-
(2012)
Phys. Rev. Lett.
, vol.108
, pp. 158105
-
-
Qian, L.1
Kussell, E.2
-
9
-
-
0017741879
-
In vivo site-specific genetic recombination promoted by the EcoRI restriction endonuclease
-
S. Chang, and S.N. Cohen In vivo site-specific genetic recombination promoted by the EcoRI restriction endonuclease Proc. Natl. Acad. Sci. USA 74 1977 4811 4815
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 4811-4815
-
-
Chang, S.1
Cohen, S.N.2
-
10
-
-
80455129653
-
Evolutionary genome engineering using a restriction-modification system
-
Y. Asakura, H. Kojima, and I. Kobayashi Evolutionary genome engineering using a restriction-modification system Nucleic Acids Res. 39 2011 9034 9046
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 9034-9046
-
-
Asakura, Y.1
Kojima, H.2
Kobayashi, I.3
-
11
-
-
0032882797
-
DNA nicks inflicted by restriction endonucleases are repaired by a RecA- and RecB-dependent pathway in Escherichia coli
-
J. Heitman, T. Ivanenko, and A. Kiss DNA nicks inflicted by restriction endonucleases are repaired by a RecA- and RecB-dependent pathway in Escherichia coli Mol. Microbiol. 33 1999 1141 1151
-
(1999)
Mol. Microbiol.
, vol.33
, pp. 1141-1151
-
-
Heitman, J.1
Ivanenko, T.2
Kiss, A.3
-
12
-
-
0035724134
-
Recombinational repair of chromosomal DNA double-strand breaks generated by a restriction endonuclease
-
G.A. Cromie, and D.R.F. Leach Recombinational repair of chromosomal DNA double-strand breaks generated by a restriction endonuclease Mol. Microbiol. 41 2001 873 883
-
(2001)
Mol. Microbiol.
, vol.41
, pp. 873-883
-
-
Cromie, G.A.1
Leach, D.R.F.2
-
13
-
-
84908654535
-
Repair on the go: E. Coli maintains a high proliferation rate while repairing a chronic DNA double-strand break
-
E. Darmon, J.K. Eykelenboom, M.A. Lopez-Vernaza, M.A. White, and D.R.F. Leach Repair on the go: E. coli maintains a high proliferation rate while repairing a chronic DNA double-strand break PLoS ONE 9 2014 e110784
-
(2014)
PLoS ONE
, vol.9
, pp. e110784
-
-
Darmon, E.1
Eykelenboom, J.K.2
Lopez-Vernaza, M.A.3
White, M.A.4
Leach, D.R.F.5
-
14
-
-
0020695910
-
The effect of growth conditions on inducible, recA-dependent resistance to X rays in Escherichia coli
-
N.J. Sargentini, W.P. Diver, and K.C. Smith The effect of growth conditions on inducible, recA-dependent resistance to X rays in Escherichia coli Radiat. Res. 93 1983 364 380
-
(1983)
Radiat. Res.
, vol.93
, pp. 364-380
-
-
Sargentini, N.J.1
Diver, W.P.2
Smith, K.C.3
-
15
-
-
34249789279
-
Spontaneous DNA breakage in single living Escherichia coli cells
-
J.M. Pennington, and S.M. Rosenberg Spontaneous DNA breakage in single living Escherichia coli cells Nat. Genet. 39 2007 797 802
-
(2007)
Nat. Genet.
, vol.39
, pp. 797-802
-
-
Pennington, J.M.1
Rosenberg, S.M.2
-
16
-
-
0348225084
-
Is modification sufficient to protect a bacterial chromosome from a resident restriction endonuclease?
-
S. Makovets, L.M. Powell, A.J.B. Titheradge, G.W. Blakely, and N.E. Murray Is modification sufficient to protect a bacterial chromosome from a resident restriction endonuclease? Mol. Microbiol. 51 2004 135 147
-
(2004)
Mol. Microbiol.
, vol.51
, pp. 135-147
-
-
Makovets, S.1
Powell, L.M.2
Titheradge, A.J.B.3
Blakely, G.W.4
Murray, N.E.5
-
17
-
-
0036138908
-
A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications
-
T. Nagai, K. Ibata, E.S. Park, M. Kubota, K. Mikoshiba, and A. Miyawaki A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications Nat. Biotechnol. 20 2002 87 90
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 87-90
-
-
Nagai, T.1
Ibata, K.2
Park, E.S.3
Kubota, M.4
Mikoshiba, K.5
Miyawaki, A.6
-
19
-
-
0034034023
-
Cellular responses to postsegregational killing by restriction-modification genes
-
N. Handa, A. Ichige, K. Kusano, and I. Kobayashi Cellular responses to postsegregational killing by restriction-modification genes J. Bacteriol. 182 2000 2218 2229
-
(2000)
J. Bacteriol.
, vol.182
, pp. 2218-2229
-
-
Handa, N.1
Ichige, A.2
Kusano, K.3
Kobayashi, I.4
-
20
-
-
0010697814
-
Repair of the Escherichia coli chromosome after in vivo scission by the EcoRI endonuclease
-
J. Heitman, N.D. Zinder, and P. Model Repair of the Escherichia coli chromosome after in vivo scission by the EcoRI endonuclease Proc. Natl. Acad. Sci. USA 86 1989 2281 2285
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 2281-2285
-
-
Heitman, J.1
Zinder, N.D.2
Model, P.3
-
21
-
-
0028901038
-
Selfish behavior of restriction-modification systems
-
T. Naito, K. Kusano, and I. Kobayashi Selfish behavior of restriction-modification systems Science 267 1995 897 899
-
(1995)
Science
, vol.267
, pp. 897-899
-
-
Naito, T.1
Kusano, K.2
Kobayashi, I.3
-
22
-
-
25144458391
-
Stability of EcoRI restriction-modification enzymes in vivo differentiates the EcoRI restriction-modification system from other postsegregational cell killing systems
-
A. Ichige, and I. Kobayashi Stability of EcoRI restriction-modification enzymes in vivo differentiates the EcoRI restriction-modification system from other postsegregational cell killing systems J. Bacteriol. 187 2005 6612 6621
-
(2005)
J. Bacteriol.
, vol.187
, pp. 6612-6621
-
-
Ichige, A.1
Kobayashi, I.2
-
23
-
-
66249109296
-
From damaged genome to cell surface: Transcriptome changes during bacterial cell death triggered by loss of a restriction-modification gene complex
-
Y. Asakura, and I. Kobayashi From damaged genome to cell surface: transcriptome changes during bacterial cell death triggered by loss of a restriction-modification gene complex Nucleic Acids Res. 37 2009 3021 3031
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 3021-3031
-
-
Asakura, Y.1
Kobayashi, I.2
-
24
-
-
84946059381
-
REBASE - A database for DNA restriction and modification: Enzymes, genes and genomes
-
R.J. Roberts, T. Vincze, J. Posfai, and D. Macelis REBASE - a database for DNA restriction and modification: enzymes, genes and genomes Nucleic Acids Res. 43 2015 D298 D299
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D298-D299
-
-
Roberts, R.J.1
Vincze, T.2
Posfai, J.3
MacElis, D.4
-
25
-
-
77955290534
-
Restriction-modification systems and bacteriophage invasion: Who wins?
-
F.N. Enikeeva, K.V. Severinov, and M.S. Gelfand Restriction-modification systems and bacteriophage invasion: who wins? J. Theor. Biol. 266 2010 550 559
-
(2010)
J. Theor. Biol.
, vol.266
, pp. 550-559
-
-
Enikeeva, F.N.1
Severinov, K.V.2
Gelfand, M.S.3
-
26
-
-
84861211375
-
Promiscuous restriction is a cellular defense strategy that confers fitness advantage to bacteria
-
K. Vasu, E. Nagamalleswari, and V. Nagaraja Promiscuous restriction is a cellular defense strategy that confers fitness advantage to bacteria Proc. Natl. Acad. Sci. USA 109 2012 E1287 E1293
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. E1287-E1293
-
-
Vasu, K.1
Nagamalleswari, E.2
Nagaraja, V.3
-
27
-
-
29244492278
-
Transcription regulation of the EcoRV restriction-modification system
-
E. Semenova, L. Minakhin, E. Bogdanova, M. Nagornykh, A. Vasilov, T. Heyduk, A. Solonin, M. Zakharova, and K. Severinov Transcription regulation of the EcoRV restriction-modification system Nucleic Acids Res. 33 2005 6942 6951
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6942-6951
-
-
Semenova, E.1
Minakhin, L.2
Bogdanova, E.3
Nagornykh, M.4
Vasilov, A.5
Heyduk, T.6
Solonin, A.7
Zakharova, M.8
Severinov, K.9
-
28
-
-
52049122374
-
[Regulation of gene expression in type II restriction-modification system]
-
M.O. Nagornykh, E.S. Bogdanova, A.S. Protsenko, M.V. Zakharova, A.S. Solonin, and K.V. Severinov [Regulation of gene expression in type II restriction-modification system] Genetika 44 2008 606 615
-
(2008)
Genetika
, vol.44
, pp. 606-615
-
-
Nagornykh, M.O.1
Bogdanova, E.S.2
Protsenko, A.S.3
Zakharova, M.V.4
Solonin, A.S.5
Severinov, K.V.6
-
29
-
-
43349095997
-
Real-time kinetics of restriction-modification gene expression after entry into a new host cell
-
I. Mruk, and R.M. Blumenthal Real-time kinetics of restriction-modification gene expression after entry into a new host cell Nucleic Acids Res. 36 2008 2581 2593
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2581-2593
-
-
Mruk, I.1
Blumenthal, R.M.2
-
30
-
-
79960453864
-
Antisense RNA associated with biological regulation of a restriction-modification system
-
I. Mruk, Y. Liu, L. Ge, and I. Kobayashi Antisense RNA associated with biological regulation of a restriction-modification system Nucleic Acids Res. 39 2011 5622 5632
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 5622-5632
-
-
Mruk, I.1
Liu, Y.2
Ge, L.3
Kobayashi, I.4
-
31
-
-
84888261745
-
To be or not to be: Regulation of restriction-modification systems and other toxin-antitoxin systems
-
I. Mruk, and I. Kobayashi To be or not to be: regulation of restriction-modification systems and other toxin-antitoxin systems Nucleic Acids Res. 42 2014 70 86
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 70-86
-
-
Mruk, I.1
Kobayashi, I.2
-
33
-
-
79251603722
-
Non-genetic heterogeneity from stochastic partitioning at cell division
-
D. Huh, and J. Paulsson Non-genetic heterogeneity from stochastic partitioning at cell division Nat. Genet. 43 2011 95 100
-
(2011)
Nat. Genet.
, vol.43
, pp. 95-100
-
-
Huh, D.1
Paulsson, J.2
-
34
-
-
0037389511
-
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
-
R.J. Roberts, M. Belfort, T. Bestor, A.S. Bhagwat, T.A. Bickle, J. Bitinaite, R.M. Blumenthal, S.Kh. Degtyarev, D.T. Dryden, K. Dybvig, and et al. A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes Nucleic Acids Res. 31 2003 1805 1812
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1805-1812
-
-
Roberts, R.J.1
Belfort, M.2
Bestor, T.3
Bhagwat, A.S.4
Bickle, T.A.5
Bitinaite, J.6
Blumenthal, R.M.7
Degtyarev, S.Kh.8
Dryden, D.T.9
Dybvig, K.10
-
35
-
-
84928658828
-
Parasite exposure drives selective evolution of constitutive versus inducible defense
-
E.R. Westra, S. van Houte, S. Oyesiku-Blakemore, B. Makin, J.M. Broniewski, A. Best, J. Bondy-Denomy, A. Davidson, M. Boots, and A. Buckling Parasite exposure drives selective evolution of constitutive versus inducible defense Curr. Biol. 25 2015 1043 1049
-
(2015)
Curr. Biol.
, vol.25
, pp. 1043-1049
-
-
Westra, E.R.1
Van Houte, S.2
Oyesiku-Blakemore, S.3
Makin, B.4
Broniewski, J.M.5
Best, A.6
Bondy-Denomy, J.7
Davidson, A.8
Boots, M.9
Buckling, A.10
-
36
-
-
84938298616
-
Costs of CRISPR-Cas-mediated resistance in Streptococcus thermophilus
-
P.F. Vale, G. Lafforgue, F. Gatchitch, R. Gardan, S. Moineau, and S. Gandon Costs of CRISPR-Cas-mediated resistance in Streptococcus thermophilus Proc. R. Soc. B 282 2015 20151270
-
(2015)
Proc. R. Soc. B
, vol.282
, pp. 20151270
-
-
Vale, P.F.1
Lafforgue, G.2
Gatchitch, F.3
Gardan, R.4
Moineau, S.5
Gandon, S.6
-
37
-
-
84931749002
-
Evolution of suicide as a defence strategy against pathogens in a spatially structured environment
-
T.W. Berngruber, S. Lion, and S. Gandon Evolution of suicide as a defence strategy against pathogens in a spatially structured environment Ecol. Lett. 16 2013 446 453
-
(2013)
Ecol. Lett.
, vol.16
, pp. 446-453
-
-
Berngruber, T.W.1
Lion, S.2
Gandon, S.3
-
38
-
-
84875296529
-
Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection
-
D. Refardt, T. Bergmiller, and R. Kümmerli Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection Proc. R. Soc. B 280 2013 20123035
-
(2013)
Proc. R. Soc. B
, vol.280
, pp. 20123035
-
-
Refardt, D.1
Bergmiller, T.2
Kümmerli, R.3
-
39
-
-
0022216068
-
Constraints on the coevolution of bacteria and virulent phage: A model, some experiments, and predictions for natural communities
-
R.E. Lenski, and B.R. Levin Constraints on the coevolution of bacteria and virulent phage: a model, some experiments, and predictions for natural communities Am. Nat. 125 1985 585 602
-
(1985)
Am. Nat.
, vol.125
, pp. 585-602
-
-
Lenski, R.E.1
Levin, B.R.2
-
40
-
-
0001498389
-
Experimental studies of pleiotropy and epistasis in Escherichia coli. I. Variation in competitive fitness among mutants resistant to virus T4
-
R.E. Lenski Experimental studies of pleiotropy and epistasis in Escherichia coli. I. Variation in competitive fitness among mutants resistant to virus T4 Evolution 42 1988 425 432
-
(1988)
Evolution
, vol.42
, pp. 425-432
-
-
Lenski, R.E.1
-
41
-
-
79953281735
-
Bacteria-phage antagonistic coevolution in soil
-
P. Gómez, and A. Buckling Bacteria-phage antagonistic coevolution in soil Science 332 2011 106 109
-
(2011)
Science
, vol.332
, pp. 106-109
-
-
Gómez, P.1
Buckling, A.2
-
42
-
-
79960210902
-
The evolution of resistance to a parasite is determined by resources
-
M. Boots The evolution of resistance to a parasite is determined by resources Am. Nat. 178 2011 214 220
-
(2011)
Am. Nat.
, vol.178
, pp. 214-220
-
-
Boots, M.1
-
43
-
-
75749118174
-
Self versus non-self discrimination during CRISPR RNA-directed immunity
-
L.A. Marraffini, and E.J. Sontheimer Self versus non-self discrimination during CRISPR RNA-directed immunity Nature 463 2010 568 571
-
(2010)
Nature
, vol.463
, pp. 568-571
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
44
-
-
84944882221
-
Resistance and tolerance to foreign elements by prokaryotic immune systems - Curating the genome
-
G.W. Goldberg, and L.A. Marraffini Resistance and tolerance to foreign elements by prokaryotic immune systems - curating the genome Nat. Rev. Immunol. 15 2015 717 724
-
(2015)
Nat. Rev. Immunol.
, vol.15
, pp. 717-724
-
-
Goldberg, G.W.1
Marraffini, L.A.2
-
45
-
-
84874924160
-
Diverse functions of restriction-modification systems in addition to cellular defense
-
K. Vasu, and V. Nagaraja Diverse functions of restriction-modification systems in addition to cellular defense Microbiol. Mol. Biol. Rev. 77 2013 53 72
-
(2013)
Microbiol. Mol. Biol. Rev.
, vol.77
, pp. 53-72
-
-
Vasu, K.1
Nagaraja, V.2
-
46
-
-
0001298437
-
Phage-mediated selection and the evolution and maintenance of restriction-modification
-
R. Korona, and B.R. Levin Phage-mediated selection and the evolution and maintenance of restriction-modification Evolution 47 1993 556 575
-
(1993)
Evolution
, vol.47
, pp. 556-575
-
-
Korona, R.1
Levin, B.R.2
-
47
-
-
77955350733
-
A type III-like restriction endonuclease functions as a major barrier to horizontal gene transfer in clinical Staphylococcus aureus strains
-
A.R. Corvaglia, P. François, D. Hernandez, K. Perron, P. Linder, and J. Schrenzel A type III-like restriction endonuclease functions as a major barrier to horizontal gene transfer in clinical Staphylococcus aureus strains Proc. Natl. Acad. Sci. USA 107 2010 11954 11958
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 11954-11958
-
-
Corvaglia, A.R.1
François, P.2
Hernandez, D.3
Perron, K.4
Linder, P.5
Schrenzel, J.6
-
48
-
-
84891161530
-
Restriction-modification systems as mobile epigenetic elements
-
A. Roberts, P. Mullany, Landes Bioscience
-
Y. Furuta, and I. Kobayashi Restriction-modification systems as mobile epigenetic elements A. Roberts, P. Mullany, Bacterial Integrative Mobile Genetic Elements 2012 Landes Bioscience 1 19
-
(2012)
Bacterial Integrative Mobile Genetic Elements
, pp. 1-19
-
-
Furuta, Y.1
Kobayashi, I.2
-
49
-
-
0033972854
-
Genetic variation: Molecular mechanisms and impact on microbial evolution
-
W. Arber Genetic variation: molecular mechanisms and impact on microbial evolution FEMS Microbiol. Rev. 24 2000 1 7
-
(2000)
FEMS Microbiol. Rev.
, vol.24
, pp. 1-7
-
-
Arber, W.1
|