-
1
-
-
33846078626
-
REBASE-enzymes and genes for DNA restriction and modification
-
Roberts,R.J., Vincze,T., Posfai,J. and Macelis,D. (2007) REBASE-enzymes and genes for DNA restriction and modification. Nucleic Acids Res. 35, D269-D270.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Roberts, R.J.1
Vincze, T.2
Posfai, J.3
Macelis, D.4
-
2
-
-
0036146923
-
2001 Fred Griffith review lecture. Immigration control of DNA in bacteria: Self versus non-self
-
Murray,N.E. (2002) 2001 Fred Griffith review lecture. Immigration control of DNA in bacteria: Self versus non-self. Microbiology, 148, 3-20.
-
(2002)
Microbiology
, vol.148
, pp. 3-20
-
-
Murray, N.E.1
-
3
-
-
0029940857
-
Horizontal gene transfer contributes to the wide distribution and evolution of type II restriction-modification systems
-
Jeltsch,A. and Pingoud,A. (1996) Horizontal gene transfer contributes to the wide distribution and evolution of type II restriction-modification systems. J. Mol. Evol., 42, 91-96.
-
(1996)
J. Mol. Evol
, vol.42
, pp. 91-96
-
-
Jeltsch, A.1
Pingoud, A.2
-
4
-
-
0022376069
-
Cloning of a restriction-modification system from Proteus vulgaris and its use in analyzing a methylase-sensitive phenotype in Escherichia coli
-
Blumenthal,R.M., Gregory,S.A. and Cooperider,J.S. (1985) Cloning of a restriction-modification system from Proteus vulgaris and its use in analyzing a methylase-sensitive phenotype in Escherichia coli. J. Bacteriol., 164, 501-509.
-
(1985)
J. Bacteriol
, vol.164
, pp. 501-509
-
-
Blumenthal, R.M.1
Gregory, S.A.2
Cooperider, J.S.3
-
5
-
-
34948863873
-
Negative regulation of EcoRI restriction enzyme gene associated with intragenic reverse promoters
-
Liu,Y. and Kobayashi,I. (2007) Negative regulation of EcoRI restriction enzyme gene associated with intragenic reverse promoters. J. Bacteriol., 189, 6928-6935.
-
(2007)
J. Bacteriol
, vol.189
, pp. 6928-6935
-
-
Liu, Y.1
Kobayashi, I.2
-
6
-
-
34548042075
-
Regulation of the EcoRI restriction-modification system: Identification of ecoRIM gene promoters and their upstream negative regulators in the ecoRIR gene
-
Liu,Y., Ichige,A. and Kobayashi,I. (2007) Regulation of the EcoRI restriction-modification system: Identification of ecoRIM gene promoters and their upstream negative regulators in the ecoRIR gene. Gene., 400, 140-149.
-
(2007)
Gene
, vol.400
, pp. 140-149
-
-
Liu, Y.1
Ichige, A.2
Kobayashi, I.3
-
7
-
-
0028641158
-
Regulation of EcoRII methyltransferase: Effect of mutations on gene expression and in vitro binding to the promoter region
-
Som,S. and Friedman,S. (1994) Regulation of EcoRII methyltransferase: effect of mutations on gene expression and in vitro binding to the promoter region. Nucleic Acids Res., 22, 5347-5353.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 5347-5353
-
-
Som, S.1
Friedman, S.2
-
8
-
-
0027210638
-
Complex transcription of an operon encoding the SalI restriction-modification system of Streptomyces albus G
-
Alvarez,M.A., Chater,K.F. and Rodicio,M.R. (1993) Complex transcription of an operon encoding the SalI restriction-modification system of Streptomyces albus G. Mol. Microbiol., 8, 243-252.
-
(1993)
Mol. Microbiol
, vol.8
, pp. 243-252
-
-
Alvarez, M.A.1
Chater, K.F.2
Rodicio, M.R.3
-
9
-
-
0026633116
-
Sequence and characterization of pvuIIR, the PvuII endonuclease gene, and of pvuIIC, its regulatory gene
-
Tao,T. and Blumenthal,R.M. (1992) Sequence and characterization of pvuIIR, the PvuII endonuclease gene, and of pvuIIC, its regulatory gene. J. Bacteriol., 174, 3395-3398.
-
(1992)
J. Bacteriol
, vol.174
, pp. 3395-3398
-
-
Tao, T.1
Blumenthal, R.M.2
-
10
-
-
0028865833
-
The regulatory C proteins from different restriction-modification systems can cross-complement
-
Ives,C.L., Sohail,A. and Brooks,J.E. (1995) The regulatory C proteins from different restriction-modification systems can cross-complement. J. Bacteriol., 177, 6313-6315.
-
(1995)
J. Bacteriol
, vol.177
, pp. 6313-6315
-
-
Ives, C.L.1
Sohail, A.2
Brooks, J.E.3
-
11
-
-
28844494799
-
Crystal structure of the restriction-modification system control element C.BclI and mapping of its binding site
-
Sawaya,M.R., Zhu,Z., Mersha,F., Chan,S.H., Dabur,R., Xu,S.Y. and Balendiran,G.K. (2005) Crystal structure of the restriction-modification system control element C.BclI and mapping of its binding site. Structure, 13, 1837-1847.
-
(2005)
Structure
, vol.13
, pp. 1837-1847
-
-
Sawaya, M.R.1
Zhu, Z.2
Mersha, F.3
Chan, S.H.4
Dabur, R.5
Xu, S.Y.6
Balendiran, G.K.7
-
12
-
-
0030615227
-
Cloning and characterization of the BglII restriction-modification system reveals a possible evolutionary footprint
-
Anton,B.P., Heiter,D.F., Benner,J.S., Hess,E.J., Greenough,L., Moran,L.S., Slatko,B.E. and Brooks,J.E. (1997) Cloning and characterization of the BglII restriction-modification system reveals a possible evolutionary footprint. Gene, 187, 19-27.
-
(1997)
Gene
, vol.187
, pp. 19-27
-
-
Anton, B.P.1
Heiter, D.F.2
Benner, J.S.3
Hess, E.J.4
Greenough, L.5
Moran, L.S.6
Slatko, B.E.7
Brooks, J.E.8
-
13
-
-
0037437368
-
Esp1396I restriction-modification system: Structural organization and mode of regulation
-
Cesnaviciene,E., Mitkaite,G., Stankevicius,K., Janulaitis,A. and Lubys,A. (2003) Esp1396I restriction-modification system: Structural organization and mode of regulation. Nucleic Acids Res., 31, 743-749.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 743-749
-
-
Cesnaviciene, E.1
Mitkaite, G.2
Stankevicius, K.3
Janulaitis, A.4
Lubys, A.5
-
14
-
-
0037101805
-
C.EcoO109I, a regulatory protein for production of EcoO109I restriction endonuclease, specifically binds to and bends DNA upstream of its translational start site
-
Kita,K., Tsuda,J. and Nakai,S.Y. (2002) C.EcoO109I, a regulatory protein for production of EcoO109I restriction endonuclease, specifically binds to and bends DNA upstream of its translational start site. Nucleic Acids Res., 30, 3558-3565.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3558-3565
-
-
Kita, K.1
Tsuda, J.2
Nakai, S.Y.3
-
15
-
-
29244492278
-
Transcription regulation of the EcoRV restriction-modification system
-
Semenova,E., Minakhin,L., Bogdanova,E., Nagornykh,M., Vasilov,A., Heyduk,T., Solonin,A., Zakharova,M. and Severinov,K. (2005) Transcription regulation of the EcoRV restriction-modification system. Nucleic Acids Res., 33, 6942-6951.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6942-6951
-
-
Semenova, E.1
Minakhin, L.2
Bogdanova, E.3
Nagornykh, M.4
Vasilov, A.5
Heyduk, T.6
Solonin, A.7
Zakharova, M.8
Severinov, K.9
-
16
-
-
0029030933
-
The eco72IC gene specifies a trans-acting factor which influences expression of both DNA methyltransferase and endonuclease from the Eco72I restriction-modification system
-
Rimseliene,R., Vaisvila,R. and Janulaitis,A. (1995) The eco72IC gene specifies a trans-acting factor which influences expression of both DNA methyltransferase and endonuclease from the Eco72I restriction-modification system. Gene, 157, 217-219.
-
(1995)
Gene
, vol.157
, pp. 217-219
-
-
Rimseliene, R.1
Vaisvila, R.2
Janulaitis, A.3
-
17
-
-
0029013490
-
Organization and gene expression within restriction-modification systems of Herpetosiphon giganteus
-
Kroger,M., Blum,E., Deppe,E., Dusterhoft,A., Erdmann,D., Kilz,S., Meyer-Rogge,S. and Mostl,D. (1995) Organization and gene expression within restriction-modification systems of Herpetosiphon giganteus. Gene, 157, 43-47.
-
(1995)
Gene
, vol.157
, pp. 43-47
-
-
Kroger, M.1
Blum, E.2
Deppe, E.3
Dusterhoft, A.4
Erdmann, D.5
Kilz, S.6
Meyer-Rogge, S.7
Mostl, D.8
-
18
-
-
0343415133
-
Nucleotide sequence of the gene encoding the BstLVI DNA methyltransferase: Comparison with other amino-DNA methyltransferases
-
Vasquez,C.C., Saavedra,C.P. and Pichuantes,S.E. (2000) Nucleotide sequence of the gene encoding the BstLVI DNA methyltransferase: comparison with other amino-DNA methyltransferases. Curr. Microbiol. 40, 114-118.
-
(2000)
Curr. Microbiol
, vol.40
, pp. 114-118
-
-
Vasquez, C.C.1
Saavedra, C.P.2
Pichuantes, S.E.3
-
19
-
-
0033231412
-
Structural organization and regulation of the plasmid-borne type II restriction-modification system Kpn2I from Klebsiella pneumoniae RFL2
-
Lubys,A., Jurenaite,S. and Janulaitis,A. (1999) Structural organization and regulation of the plasmid-borne type II restriction-modification system Kpn2I from Klebsiella pneumoniae RFL2. Nucleic Acids Res., 27, 4228-4234.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4228-4234
-
-
Lubys, A.1
Jurenaite, S.2
Janulaitis, A.3
-
20
-
-
0024850487
-
Cloning, characterization and heterologous expression of the SmaI restriction-modification system
-
Heidmann,S., Seifert,W., Kessler,C. and Domdey,H. (1989) Cloning, characterization and heterologous expression of the SmaI restriction-modification system. Nucleic Acids Res., 17, 9783-9796.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 9783-9796
-
-
Heidmann, S.1
Seifert, W.2
Kessler, C.3
Domdey, H.4
-
21
-
-
33646105382
-
Cooperative binding of the C.AhdI controller protein to the C/R promoter and its role in endonuclease gene expression
-
McGeehan,J.E., Papapanagiotou,I., Streeter,S.D. and Kneale,G.G. (2006) Cooperative binding of the C.AhdI controller protein to the C/R promoter and its role in endonuclease gene expression. J. Mol. Biol., 358, 523-531.
-
(2006)
J. Mol. Biol
, vol.358
, pp. 523-531
-
-
McGeehan, J.E.1
Papapanagiotou, I.2
Streeter, S.D.3
Kneale, G.G.4
-
22
-
-
0026087311
-
A family of regulatory genes associated with type II restriction-modification systems
-
Tao,T., Bourne,J.C. and Blumenthal,R.M. (1991) A family of regulatory genes associated with type II restriction-modification systems. J. Bacteriol., 173, 1367-1375.
-
(1991)
J. Bacteriol
, vol.173
, pp. 1367-1375
-
-
Tao, T.1
Bourne, J.C.2
Blumenthal, R.M.3
-
23
-
-
13844281073
-
High-resolution crystal structure of the restriction-modification controller protein C.AhdI from Aeromonas hydrophila
-
McGeehan,J.E., Streeter,S.D., Papapanagiotou,I., Fox,G.C. and Kneale,G.G. (2005) High-resolution crystal structure of the restriction-modification controller protein C.AhdI from Aeromonas hydrophila. J. Mol. Biol., 346, 689-701.
-
(2005)
J. Mol. Biol
, vol.346
, pp. 689-701
-
-
McGeehan, J.E.1
Streeter, S.D.2
Papapanagiotou, I.3
Fox, G.C.4
Kneale, G.G.5
-
24
-
-
11844250013
-
Nature of the promoter activated by C.PvuII, an unusual regulatory protein conserved among restriction-modification systems
-
Knowle,D., Lintner,R.E., Touma,Y.M. and Blumenthal,R.M. (2005) Nature of the promoter activated by C.PvuII, an unusual regulatory protein conserved among restriction-modification systems. J. Bacteriol., 187, 488-497.
-
(2005)
J. Bacteriol
, vol.187
, pp. 488-497
-
-
Knowle, D.1
Lintner, R.E.2
Touma, Y.M.3
Blumenthal, R.M.4
-
25
-
-
0028094540
-
Lambda cI repressor mutants altered in transcriptional activation
-
Kolkhof,P. and Muller-Hill,B. (1994) Lambda cI repressor mutants altered in transcriptional activation. J. Mol. Biol., 242, 23-36.
-
(1994)
J. Mol. Biol
, vol.242
, pp. 23-36
-
-
Kolkhof, P.1
Muller-Hill, B.2
-
26
-
-
0032568598
-
Restriction-modification gene complexes as selfish gene entities: Roles of a regulatory system in their establishment, maintenance, and apoptotic mutual exclusion
-
Nakayama,Y. and Kobayashi,I. (1998) Restriction-modification gene complexes as selfish gene entities: Roles of a regulatory system in their establishment, maintenance, and apoptotic mutual exclusion. Proc. Natl Acad. Sci. USA, 95, 6442-6447.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 6442-6447
-
-
Nakayama, Y.1
Kobayashi, I.2
-
27
-
-
0031782375
-
Control of expression of LlaI restriction in Lactococcus lactis
-
O'Sullivan,D.J. and Klaenhammer,T.R. (1998) Control of expression of LlaI restriction in Lactococcus lactis. Mol. Microbiol., 27, 1009-1020.
-
(1998)
Mol. Microbiol
, vol.27
, pp. 1009-1020
-
-
O'Sullivan, D.J.1
Klaenhammer, T.R.2
-
28
-
-
0033988985
-
Role and mechanism of action of C. PvuII, a regulatory protein conserved among restriction-modification systems
-
Vijesurier,R.M., Carlock,L., Blumenthal,R.M. and Dunbar,J.C. (2000) Role and mechanism of action of C. PvuII, a regulatory protein conserved among restriction-modification systems. J. Bacteriol., 182, 477-487.
-
(2000)
J. Bacteriol
, vol.182
, pp. 477-487
-
-
Vijesurier, R.M.1
Carlock, L.2
Blumenthal, R.M.3
Dunbar, J.C.4
-
29
-
-
36749088056
-
Regulatory circuit based on autogenous activation-repression: Roles of C-boxes and spacer sequences in control of the PvuII restriction-modification system
-
Mruk,I., Rajesh,P. and Blumenthal,R.M. (2007) Regulatory circuit based on autogenous activation-repression: Roles of C-boxes and spacer sequences in control of the PvuII restriction-modification system. Nucleic Acids Res., 35, 6935-6952.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 6935-6952
-
-
Mruk, I.1
Rajesh, P.2
Blumenthal, R.M.3
-
30
-
-
41149103531
-
Transcription regulation of the type II restriction-modification system AhdI
-
Jan. 18 [Epub ahead of print
-
Bogdanova,E., Djordjevic,M., Papapanagiotou,I., Heyduk,T., Kneale,G. and Severinov,K. (2008) Transcription regulation of the type II restriction-modification system AhdI. Nucleic Acids Res., Jan. 18 [Epub ahead of print].
-
(2008)
Nucleic Acids Res
-
-
Bogdanova, E.1
Djordjevic, M.2
Papapanagiotou, I.3
Heyduk, T.4
Kneale, G.5
Severinov, K.6
-
31
-
-
0024296268
-
McrA and McrB restriction phenotypes of some E. coli strains and implications for gene cloning
-
Raleigh,E.A., Murray,N.E., Revel,H., Blumenthal,R.M., Westaway,D., Reith,A.D., Rigby,P.W., Elhai,J. and Hanahan,D. (1988) McrA and McrB restriction phenotypes of some E. coli strains and implications for gene cloning. Nucleic Acids Res., 16, 1563-1575.
-
(1988)
Nucleic Acids Res
, vol.16
, pp. 1563-1575
-
-
Raleigh, E.A.1
Murray, N.E.2
Revel, H.3
Blumenthal, R.M.4
Westaway, D.5
Reith, A.D.6
Rigby, P.W.7
Elhai, J.8
Hanahan, D.9
-
32
-
-
0242400018
-
Degradation of mRNA in bacteria: Emergence of ubiquitous features
-
Regnier,P. and Arraiano,C.M. (2000) Degradation of mRNA in bacteria: emergence of ubiquitous features. Bioessays, 22, 235-244.
-
(2000)
Bioessays
, vol.22
, pp. 235-244
-
-
Regnier, P.1
Arraiano, C.M.2
-
33
-
-
0026602370
-
Organization and function of the mcrBC genes of Escherichia coli K-12
-
Raleigh,E.A. (1992) Organization and function of the mcrBC genes of Escherichia coli K-12. Mol. Microbiol., 6, 1079-1086.
-
(1992)
Mol. Microbiol
, vol.6
, pp. 1079-1086
-
-
Raleigh, E.A.1
-
34
-
-
0004136246
-
-
2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
-
Sambrook,J., Fritsch,E.F. and Maniatis,T. (1986) Molecular Cloning: A Laboratory Manual. 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
-
(1986)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
35
-
-
0017324372
-
Stability of the carrier state in bacteriophage M13-infected cells
-
Merriam,V. (1977) Stability of the carrier state in bacteriophage M13-infected cells. J. Virol., 21, 880-888.
-
(1977)
J. Virol
, vol.21
, pp. 880-888
-
-
Merriam, V.1
-
36
-
-
0014673688
-
Loss of an episomal fertility factor following the multiplication of coliphage M13
-
Palchoudhury,S.R. and Iyer,V.N. (1969) Loss of an episomal fertility factor following the multiplication of coliphage M13. Mol. Gen. Genet., 105, 131-139.
-
(1969)
Mol. Gen. Genet
, vol.105
, pp. 131-139
-
-
Palchoudhury, S.R.1
Iyer, V.N.2
-
37
-
-
19044393414
-
Genome-wide comparison of phage M13-infected vs. uninfected Escherichia coli
-
Karlsson,F., Malmborg-Hager,A.C., Albrekt,A.S. and Borrebaeck,C.A. (2005) Genome-wide comparison of phage M13-infected vs. uninfected Escherichia coli. Can. J. Microbiol., 51, 29-35.
-
(2005)
Can. J. Microbiol
, vol.51
, pp. 29-35
-
-
Karlsson, F.1
Malmborg-Hager, A.C.2
Albrekt, A.S.3
Borrebaeck, C.A.4
-
38
-
-
0026822738
-
SOS induction in Escherichia coli by infection with mutant filamentous phage that are defective in initiation of complementary-strand DNA synthesis
-
Higashitani,N., Higashitani,A., Roth,A. and Horiuchi,K. (1992) SOS induction in Escherichia coli by infection with mutant filamentous phage that are defective in initiation of complementary-strand DNA synthesis. J. Bacteriol., 174, 1612-1618.
-
(1992)
J. Bacteriol
, vol.174
, pp. 1612-1618
-
-
Higashitani, N.1
Higashitani, A.2
Roth, A.3
Horiuchi, K.4
-
39
-
-
0025848721
-
Biochemical and biological function of Escherichia coli RecA protein: Behavior of mutant RecA proteins
-
Kowalczykowski,S.C. (1991) Biochemical and biological function of Escherichia coli RecA protein: Behavior of mutant RecA proteins. Biochimie, 73, 289-304.
-
(1991)
Biochimie
, vol.73
, pp. 289-304
-
-
Kowalczykowski, S.C.1
-
40
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl,M.W. (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res., 29, e45.
-
(2001)
Nucleic Acids Res
, vol.29
-
-
Pfaffl, M.W.1
-
41
-
-
21344471138
-
Real-time RT-PCR normalisation; strategies and considerations
-
Huggett,J., Dheda,K., Bustin,S. and Zumla,A. (2005) Real-time RT-PCR normalisation; strategies and considerations. Genes Immun., 6 279-284.
-
(2005)
Genes Immun
, vol.6
, pp. 279-284
-
-
Huggett, J.1
Dheda, K.2
Bustin, S.3
Zumla, A.4
-
42
-
-
0037162469
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
-
Bernstein,J.A., Khodursky,A.B., Lin,P.H., Lin-Chao,S. and Cohen,S.N. (2002) Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc. Natl Acad. Sci. USA, 99, 9697-9702.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 9697-9702
-
-
Bernstein, J.A.1
Khodursky, A.B.2
Lin, P.H.3
Lin-Chao, S.4
Cohen, S.N.5
-
43
-
-
85042241551
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
-
Denhardt,D.T., Dressler,D. and Ray,D.S. (1978) The single-stranded DNA phages Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
-
(1978)
The single-stranded DNA phages
-
-
Denhardt, D.T.1
Dressler, D.2
Ray, D.S.3
-
44
-
-
0014355474
-
Replication of coliphage M-13. I. Effects on host cells after synchronized infection
-
Brown,L.R. and Dowell,C.E. (1968) Replication of coliphage M-13. I. Effects on host cells after synchronized infection. J. Virol., 2, 1290-1295.
-
(1968)
J. Virol
, vol.2
, pp. 1290-1295
-
-
Brown, L.R.1
Dowell, C.E.2
-
45
-
-
0018960421
-
Transcription of bacteriophage fl. The major in vivo RNAs
-
Cashman,J.S., Webster,R.E. and Steege,D.A. (1980) Transcription of bacteriophage fl. The major in vivo RNAs. J. Biol. Chem., 255 2554-2562.
-
(1980)
J. Biol. Chem
, vol.255
, pp. 2554-2562
-
-
Cashman, J.S.1
Webster, R.E.2
Steege, D.A.3
-
46
-
-
0016276266
-
Filamentous bacterial viruses. XIL. Molecular architecture of the class I (fd, If1, IKe) virion
-
Marvin,D.A., Pigram,W.J., Wiseman,R.L., Wachtel,E.J. and Marvin,F.J. (1974) Filamentous bacterial viruses. XIL. Molecular architecture of the class I (fd, If1, IKe) virion. J. Mol. Biol., 88, 581-598.
-
(1974)
J. Mol. Biol
, vol.88
, pp. 581-598
-
-
Marvin, D.A.1
Pigram, W.J.2
Wiseman, R.L.3
Wachtel, E.J.4
Marvin, F.J.5
-
47
-
-
0036301383
-
Delineating the site of interaction on the pIII protein of filamentous bacteriophage fd with the F-pilus of Escherichia coli
-
Deng,L.W. and Perham,R.N. (2002) Delineating the site of interaction on the pIII protein of filamentous bacteriophage fd with the F-pilus of Escherichia coli. J. Mol. Biol., 319, 603-614.
-
(2002)
J. Mol. Biol
, vol.319
, pp. 603-614
-
-
Deng, L.W.1
Perham, R.N.2
-
48
-
-
0036193060
-
Mutational analysis of F-pilin reveals domains for pilus assembly, phage infection and DNA transfer
-
Manchak,J., Anthony,K.G. and Frost,L.S. (2002) Mutational analysis of F-pilin reveals domains for pilus assembly, phage infection and DNA transfer. Mol. Microbiol., 43, 195-205.
-
(2002)
Mol. Microbiol
, vol.43
, pp. 195-205
-
-
Manchak, J.1
Anthony, K.G.2
Frost, L.S.3
-
49
-
-
0024786739
-
Phage Trojan horses: A conditional expression system for lethal genes
-
Heitman,J., Fulford,W. and Model,P. (1989) Phage Trojan horses: A conditional expression system for lethal genes. Gene, 85, 193-197.
-
(1989)
Gene
, vol.85
, pp. 193-197
-
-
Heitman, J.1
Fulford, W.2
Model, P.3
-
50
-
-
0029805686
-
Transcription-induced deletions in plasmid vectors: M13 DNA replication as a source of instability
-
Vilette,D., Ehrlich,S.D. and Michel,B. (1996) Transcription-induced deletions in plasmid vectors: M13 DNA replication as a source of instability. Mol. Gen. Genet., 252, 398-403.
-
(1996)
Mol. Gen. Genet
, vol.252
, pp. 398-403
-
-
Vilette, D.1
Ehrlich, S.D.2
Michel, B.3
-
51
-
-
0028799986
-
Analysis of cell size and DNA content in exponentially growing and stationary-phase batch cultures of Escherichia coli
-
Akerlund,T., Nordstrom,K. and Bernander,R. (1995) Analysis of cell size and DNA content in exponentially growing and stationary-phase batch cultures of Escherichia coli. J. Bacteriol., 177, 6791-6797.
-
(1995)
J. Bacteriol
, vol.177
, pp. 6791-6797
-
-
Akerlund, T.1
Nordstrom, K.2
Bernander, R.3
-
52
-
-
0025098031
-
The distribution of restriction enzyme sites in Escherichia coli
-
Churchill,G.A., Daniels,D.L. and Waterman,M.S. (1990) The distribution of restriction enzyme sites in Escherichia coli. Nucleic Acids Res. 18, 589-597.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 589-597
-
-
Churchill, G.A.1
Daniels, D.L.2
Waterman, M.S.3
-
53
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner,F.R., Plunkett,G.,III, Bloch,C.A., Perna,N.T., Burland,V., Riley,M., Collado-Vides,J., Glasner,J.D., Rode,C.K., Mayhew,G.F. et al. (1997) The complete genome sequence of Escherichia coli K-12. Science, 277, 1453-1474.
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
Plunkett III, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
-
54
-
-
35548960837
-
RecBCD and RecJ/RecQ initiate DNA degradation on distinct substrates in UV-irradiated Escherichia coli
-
Chow,K.H. and Courcelle,J. (2007) RecBCD and RecJ/RecQ initiate DNA degradation on distinct substrates in UV-irradiated Escherichia coli. Radiat. Res., 168, 499-506.
-
(2007)
Radiat. Res
, vol.168
, pp. 499-506
-
-
Chow, K.H.1
Courcelle, J.2
-
55
-
-
0034034023
-
Cellular responses to postsegregational killing by restriction-modification genes
-
Handa,N., Ichige,A., Kusano,K. and Kobayashi,I. (2000) Cellular responses to postsegregational killing by restriction-modification genes. J. Bacteriol., 182, 2218-2229.
-
(2000)
J. Bacteriol
, vol.182
, pp. 2218-2229
-
-
Handa, N.1
Ichige, A.2
Kusano, K.3
Kobayashi, I.4
-
56
-
-
0027524563
-
Heat shock and osmotically dependent steps by DNA uptake after Escherichia coli electroporation
-
Antonov,P.A., Maximova,V.A. and Pancheva,R.P. (1993) Heat shock and osmotically dependent steps by DNA uptake after Escherichia coli electroporation. Biochim. Biophys. Acta, 1216, 286-288.
-
(1993)
Biochim. Biophys. Acta
, vol.1216
, pp. 286-288
-
-
Antonov, P.A.1
Maximova, V.A.2
Pancheva, R.P.3
-
57
-
-
0026038362
-
Plasmid transformation of Escherichia coli and other bacteria
-
Hanahan,D., Jessee,J. and Bloom,F.R. (1991) Plasmid transformation of Escherichia coli and other bacteria. Methods Enzymol., 204 63-113.
-
(1991)
Methods Enzymol
, vol.204
, pp. 63-113
-
-
Hanahan, D.1
Jessee, J.2
Bloom, F.R.3
-
58
-
-
0032796420
-
Bacterial growth: Constant obsession with dN/dt
-
Neidhardt,F.C. (1999) Bacterial growth: Constant obsession with dN/dt. J. Bacteriol., 181, 7405-7408.
-
(1999)
J. Bacteriol
, vol.181
, pp. 7405-7408
-
-
Neidhardt, F.C.1
-
59
-
-
0025734125
-
Filamentous phage assembly
-
Russel,M. (1991) Filamentous phage assembly. Mol. Microbiol., 5 1607-1613.
-
(1991)
Mol. Microbiol
, vol.5
, pp. 1607-1613
-
-
Russel, M.1
-
60
-
-
0037379524
-
Use of genetically engineered phage to deliver antimicrobial agents to bacteria: An alternative therapy for treatment of bacterial infections
-
Westwater,C., Kasman,L.M., Schofield,D.A., Werner,P.A., Dolan,J.W., Schmidt,M.G. and Norris,J.S. (2003) Use of genetically engineered phage to deliver antimicrobial agents to bacteria: An alternative therapy for treatment of bacterial infections. Antimicrob. Agents Chemother., 47, 1301-1307.
-
(2003)
Antimicrob. Agents Chemother
, vol.47
, pp. 1301-1307
-
-
Westwater, C.1
Kasman, L.M.2
Schofield, D.A.3
Werner, P.A.4
Dolan, J.W.5
Schmidt, M.G.6
Norris, J.S.7
-
61
-
-
0141762466
-
Genetically modified filamentous phage as bactericidal agents: A pilot study
-
Hagens,S. and Blasi,U. (2003) Genetically modified filamentous phage as bactericidal agents: A pilot study. Lett. Appl. Microbiol., 37 318-323.
-
(2003)
Lett. Appl. Microbiol
, vol.37
, pp. 318-323
-
-
Hagens, S.1
Blasi, U.2
-
62
-
-
0014838846
-
Increased fragility of Escherichia coli after infection with bacteriophage M13
-
Roy,A. and Mitra,S. (1970) Increased fragility of Escherichia coli after infection with bacteriophage M13. J. Virol., 6, 333-339.
-
(1970)
J. Virol
, vol.6
, pp. 333-339
-
-
Roy, A.1
Mitra, S.2
-
63
-
-
0035951301
-
Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP
-
Barker,M.M., Gaal,T. and Gourse,R.L. (2001) Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP. J. Mol. Biol. 305, 689-702.
-
(2001)
J. Mol. Biol
, vol.305
, pp. 689-702
-
-
Barker, M.M.1
Gaal, T.2
Gourse, R.L.3
-
64
-
-
0033543765
-
Activities of constitutive promoters in Escherichia coli
-
Liang,S., Bipatnath,M., Xu,Y., Chen,S., Dennis,P., Ehrenberg,M. and Bremer,H. (1999) Activities of constitutive promoters in Escherichia coli. J. Mol. Biol., 292, 19-37.
-
(1999)
J. Mol. Biol
, vol.292
, pp. 19-37
-
-
Liang, S.1
Bipatnath, M.2
Xu, Y.3
Chen, S.4
Dennis, P.5
Ehrenberg, M.6
Bremer, H.7
-
65
-
-
0032786457
-
Homologous recombination and sex as a strategy against selfish genes attacking the genome
-
Kobayashi,I. (1999) Homologous recombination and sex as a strategy against selfish genes attacking the genome. Ann NY Acad. Sci., 870, 354-356.
-
(1999)
Ann NY Acad. Sci
, vol.870
, pp. 354-356
-
-
Kobayashi, I.1
-
66
-
-
0032728707
-
Post-segregational killing by restriction modification gene complexes: Observations of individual cell deaths
-
Handa,N. and Kobayashi,I. (1999) Post-segregational killing by restriction modification gene complexes: Observations of individual cell deaths. Biochimie, 81, 931-938.
-
(1999)
Biochimie
, vol.81
, pp. 931-938
-
-
Handa, N.1
Kobayashi, I.2
-
67
-
-
0036226256
-
Mobility of a restriction-modification system revealed by its genetic contexts in three hosts
-
Naderer,M., Brust,J.R., Knowle,D. and Blumenthal,R.M. (2002) Mobility of a restriction-modification system revealed by its genetic contexts in three hosts. J. Bacteriol., 184, 2411-2419.
-
(2002)
J. Bacteriol
, vol.184
, pp. 2411-2419
-
-
Naderer, M.1
Brust, J.R.2
Knowle, D.3
Blumenthal, R.M.4
-
68
-
-
0034663684
-
Recognition of native DNA methylation by the PvuII restriction endonuclease
-
Rice,M.R. and Blumenthal,R.M. (2000) Recognition of native DNA methylation by the PvuII restriction endonuclease. Nucleic Acids Res. 28, 3143-3150.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 3143-3150
-
-
Rice, M.R.1
Blumenthal, R.M.2
-
69
-
-
0032882797
-
DNA nicks inflicted by restriction endonucleases are repaired by a RecA- and RecB-dependent pathway in Escherichia coli
-
Heitman,J., Ivanenko,T. and Kiss,A. (1999) DNA nicks inflicted by restriction endonucleases are repaired by a RecA- and RecB-dependent pathway in Escherichia coli. Mol. Microbiol., 33, 1141-1151.
-
(1999)
Mol. Microbiol
, vol.33
, pp. 1141-1151
-
-
Heitman, J.1
Ivanenko, T.2
Kiss, A.3
-
70
-
-
0027237522
-
Delayed expression of in vivo restriction activity following conjugal transfer of Escherichia coli hsdK (restriction-modification) genes
-
Prakash-Cheng,A. and Ryu,J. (1993) Delayed expression of in vivo restriction activity following conjugal transfer of Escherichia coli hsdK (restriction-modification) genes. J. Bacteriol., 175 4905-4906.
-
(1993)
J. Bacteriol
, vol.175
, pp. 4905-4906
-
-
Prakash-Cheng, A.1
Ryu, J.2
-
71
-
-
0027330918
-
The expression and regulation of hsdK genes after conjugative transfer
-
Prakash-Cheng,A., Chung,S.S. and Ryu,J. (1993) The expression and regulation of hsdK genes after conjugative transfer. Mol. Gen. Genet. 241, 491-496.
-
(1993)
Mol. Gen. Genet
, vol.241
, pp. 491-496
-
-
Prakash-Cheng, A.1
Chung, S.S.2
Ryu, J.3
-
72
-
-
0348225084
-
Is modification sufficient to protect a bacterial chromosome from a resident restriction endonuclease?
-
Makovets,S., Powell,L.M., Titheradge,A.J., Blakely,G.W. and Murray,N.E. (2004) Is modification sufficient to protect a bacterial chromosome from a resident restriction endonuclease? Mol. Microbiol., 51, 135-147.
-
(2004)
Mol. Microbiol
, vol.51
, pp. 135-147
-
-
Makovets, S.1
Powell, L.M.2
Titheradge, A.J.3
Blakely, G.W.4
Murray, N.E.5
-
73
-
-
34247099832
-
Phosphorylation of Type IA restriction-modification complex enzyme EcoKI on the HsdR subunit
-
Cajthamlova,K., Sisakova,E., Weiser,J. and Weiserova,M. (2007) Phosphorylation of Type IA restriction-modification complex enzyme EcoKI on the HsdR subunit. FEMS Microbiol. Lett., 270, 171-177.
-
(2007)
FEMS Microbiol. Lett
, vol.270
, pp. 171-177
-
-
Cajthamlova, K.1
Sisakova, E.2
Weiser, J.3
Weiserova, M.4
-
74
-
-
0037389511
-
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
-
Roberts,R.J., Belfort,M., Bestor,T., Bhagwat,A.S., Bickle,T.A., Bitinaite,J., Blumenthal,R.M., Degtyarev,S., Dryden,D.T., Dybvig,K. et al. (2003) A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res., 31, 1805-1812.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1805-1812
-
-
Roberts, R.J.1
Belfort, M.2
Bestor, T.3
Bhagwat, A.S.4
Bickle, T.A.5
Bitinaite, J.6
Blumenthal, R.M.7
Degtyarev, S.8
Dryden, D.T.9
Dybvig, K.10
-
75
-
-
23644443867
-
The toxin-antitoxin system of the streptococcal plasmid pSM19035
-
Zielenkiewicz,U. and Ceglowski,P. (2005) The toxin-antitoxin system of the streptococcal plasmid pSM19035. J. Bacteriol., 187, 6094-6105.
-
(2005)
J. Bacteriol
, vol.187
, pp. 6094-6105
-
-
Zielenkiewicz, U.1
Ceglowski, P.2
-
76
-
-
36749088056
-
Regulatory circuit based on autogenous activation-repression: Roles of C-boxes and spacer sequences in control of the PvuII restriction-modification system
-
Mruk,I., Rajesh,P. and Blumenthal,R.M. (2007) Regulatory circuit based on autogenous activation-repression: Roles of C-boxes and spacer sequences in control of the PvuII restriction-modification system. Nucleic Acids Res., 35, 6935-6952.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 6935-6952
-
-
Mruk, I.1
Rajesh, P.2
Blumenthal, R.M.3
-
77
-
-
0037315564
-
Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation
-
Selinger,D.W., Saxena,R.M., Cheung,K.J., Church,G.M. and Rosenow,C. (2003) Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation. Genome Res., 13 216-223.
-
(2003)
Genome Res
, vol.13
, pp. 216-223
-
-
Selinger, D.W.1
Saxena, R.M.2
Cheung, K.J.3
Church, G.M.4
Rosenow, C.5
-
78
-
-
34250875706
-
Initiation of RNA decay in Escherichia coli by 5′ pyrophosphate removal
-
Celesnik,H., Deana,A. and Belasco,J.G. (2007) Initiation of RNA decay in Escherichia coli by 5′ pyrophosphate removal. Mol. Cell, 27, 79-90.
-
(2007)
Mol. Cell
, vol.27
, pp. 79-90
-
-
Celesnik, H.1
Deana, A.2
Belasco, J.G.3
-
79
-
-
18044384417
-
Bacterial small RNA regulators
-
Majdalani,N., Vanderpool,C.K. and Gottesman,S. (2005) Bacterial small RNA regulators. Crit. Rev. Biochem. Mol. Biol., 40, 93-113.
-
(2005)
Crit. Rev. Biochem. Mol. Biol
, vol.40
, pp. 93-113
-
-
Majdalani, N.1
Vanderpool, C.K.2
Gottesman, S.3
-
80
-
-
34247158257
-
Mechanism of RNA silencing by Hfq-binding small RNAs
-
Aiba,H. (2007) Mechanism of RNA silencing by Hfq-binding small RNAs. Curr. Opin. Microbiol., 10, 134-139.
-
(2007)
Curr. Opin. Microbiol
, vol.10
, pp. 134-139
-
-
Aiba, H.1
-
81
-
-
0030762448
-
Oriented DNA binding by one-armed lambda repressor heterodimers and contacts between repressor and RNA polymerase at P(RM)
-
Kim,Y.I. and Hu,J.C. (1997) Oriented DNA binding by one-armed lambda repressor heterodimers and contacts between repressor and RNA polymerase at P(RM). Mol. Microbiol., 25, 311-318.
-
(1997)
Mol. Microbiol
, vol.25
, pp. 311-318
-
-
Kim, Y.I.1
Hu, J.C.2
-
82
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
-
Yanisch-Perron,C., Vieira,J. and Messing,J. (1985) Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors. Gene, 33, 103-119.
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanisch-Perron, C.1
Vieira, J.2
Messing, J.3
-
83
-
-
0017807890
-
Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid
-
Chang,A.C. and Cohen,S.N. (1978) Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid. J. Bacteriol., 134, 1141-1156.
-
(1978)
J. Bacteriol
, vol.134
, pp. 1141-1156
-
-
Chang, A.C.1
Cohen, S.N.2
-
84
-
-
0021271212
-
Plasmid vectors for the selection of promoters
-
Brosius,J. (1984) Plasmid vectors for the selection of promoters. Gene, 27, 151-160.
-
(1984)
Gene
, vol.27
, pp. 151-160
-
-
Brosius, J.1
|