The Genetic History of Peruvian Quechua-Lamistas and Chankas: Uniparental DNA Patterns among Autochthonous Amazonian and Andean Populations

Annals of Human Genetics

Volumn 80, Issue 2, 2016, Pages 88-101

  Sandoval, José R ^a,b   Lacerda, Daniela R ^b   Acosta, Oscar ^a   Jota, Marilza S ^b   Robles Ruiz, Paulo ^c   Salazar Granara, Alberto ^a   Vieira, Pedro Paulo R ^b   Paz y Miño, César ^c   Fujita, Ricardo ^a   Santos, Fabricio R ^b   Jin, Li ^d   Li, Hui ^d   Li, Shilin ^d   Swamikrishnan, Pandikumar ^e   Javed, Asif ^e   Parida, Laxmi ^e   Royyuru, Ajay K ^e   Mitchell, R John ^f   Zalloua, Pierre A ^g   Adhikarla, Syama ^h   Kumar, Arun ^h   Prasad, Ganesh ^h   Pitchappan, Ramasamy ^h   Santhakumari, Arun Varatharajan ^h   Valampuri, Kavitha ^h   Wells, R Spencer ⁱ   Vilar, Miguel G ⁱ   Soodyall, Himla ^j   Balanovska, Elena ^k   Balanovsky, Oleg ^k   Tyler Smith, Chris ^l   Bertranpetit, Jaume ^m   Comas, David ^m   Cooper, Alan ⁿ   Haak, Wolfgang ⁿ   Kaplan, Matthew E ^o   Merchant, Nirav C ^o   Renfrew, Colin ^p   Clarke, Andrew C ^q   Matisoo Smith, Elizabeth A ^q   Gaieski, Jill B ^r   Schurr, Theodore G ^r   more..

^a UNIVERSIDAD DE SAN MARTÍN DE PORRES   (Peru)

^b FEDERAL UNIVERSITY OF MINAS GERAIS   (Brazil)

^c UNIVERSIDAD DE LAS AMÉRICAS   (Ecuador)

^d FUDAN UNIVERSITY   (China)

^e IBM   (United States)

^f LA TROBE UNIVERSITY   (Australia)

^g LEBANESE AMERICAN UNIVERSITY   (Lebanon)

^h MADURAI KAMARAJ UNIVERSITY   (India)

ⁱ NATIONAL GEOGRAPHIC SOCIETY   (United States)

^j NATIONAL HEALTH LABORATORY SERVICE   (South Africa)

^k RESEARCH CENTRE FOR MEDICAL GENETICS   (Russian Federation)

^l WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^m UNIVERSITAT POMPEU FABRA   (Spain)

ⁿ UNIVERSITY OF ADELAIDE   (Australia)

^o UNIVERSITY OF ARIZONA   (United States)

^p UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^q UNIVERSITY OF OTAGO   (New Zealand)

^r UNIVERSITY OF PENNSYLVANIA   (United States)

more..

Author keywords

Amazonia; Andes; Chankas; Human history; Indigenous South Americans; mtDNA; Quechua Lamistas; Y SNPs; Y STRs

Indexed keywords

MITOCHONDRIAL DNA;

ANCESTRY GROUP; ARTICLE; CHANKAS; DEMOGRAPHY; ECUADOR; ETHNIC GROUP; GENETIC DISTANCE; GENETIC HETEROGENEITY; GENETIC VARIABILITY; HAPLOTYPE; HETEROZYGOSITY; HISTORY; HUMAN; HUMAN GENETICS; JIVARO (PEOPLE); LANGUAGE; MAJOR CLINICAL STUDY; MITOCHONDRIAL HAPLOGROUP; MOLECULAR PHYLOGENY; PERU; PERUVIAN; PHYLOGEOGRAPHY; PRIORITY JOURNAL; QUECHUA (PEOPLE); QUECHUA LAMISTAS; SHORT TANDEM REPEAT; SINGLE NUCLEOTIDE POLYMORPHISM; SOUTH AMERICAN; Y CHROMOSOME; AMERICAN INDIAN; BOLIVIA; GENETICS; MALE; POPULATION GENETICS; SPATIAL ANALYSIS;

BOLIVIA; CHROMOSOMES, HUMAN, Y; DNA, MITOCHONDRIAL; ECUADOR; GENETICS, POPULATION; HAPLOTYPES; HUMANS; INDIANS, SOUTH AMERICAN; MALE; PERU; SPATIAL ANALYSIS;

EID: 84958745450     PISSN: 00034800     EISSN: 14691809     Source Type: Journal    
DOI: 10.1111/ahg.12145     Document Type: Article

References (51)

1. Adelaar, W. F. H. (2013) Quechua I y Quechua II: En defensa de una distinción establecida. Rev Bras Linguist Antropol 5(1), 45-65.
2. Andrews, R. M., Kubacka . I., Chinnery, P. F., Lightowlers, R. N., Turnbull, D. M. & Howell, N. (1999) Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet 23, 147.
3. Arnaiz-Villena, A., Moscoso, J., Serrano-Vela, J. I. & Martinez-Laso, J. (2006) The uniqueness of Amerindians according to HLA genes and the peopling of the Americas. Immunología 25, 13-24.
4. Baeta, M., Núñez, C., Sosa, C., Bolea, M., Casalod, Y., Gonzáles-Andrade, F., Roewer, L. & Martínez-Jarreta, B. (2012) Mitochondrial diversity in Amerindian Kichwa and Mestizo populations from Ecuador. Int J Legal Med 126, 299-302.
5. Bandelt, H. -J., Forster, P. & Röhl, A. (1999) Median-Joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16, 37-48.
6. Bauer, B. S. & Kellett, L. C. (2010) Cultural transformations of the Chanka homeland (Andahuaylas, Peru) during the Late Intermediate Period (A.D. 1000-1400). Lat Am Antiq 21, 87-111.
7. Behar, D. M., Rosset, S., Blue-Smith, J., Balanovsky, O., Tzur, S., Comas, D., Mitchell, R. J., Quintana-Murci, L., Tyler-Smith, C., Wells, R. S. & Genographic Consortium (2007) The Genographic Project public participation mitochondrial DNA database. PLoS Genet. 3, e104. doi:10.1371/journal.pgen.0030104
8. Cobo, B. (1653) Historia del Nuevo Mundo. Publisher: Sevilla, Imp. de E. Rasco, Jimenez de la Espada M, 1892, Spain: New York Public Library.
9. de la Vega, I. G. (1609) Los comentarios reales de los Incas. Lisboa, Portugal: Impreso en casa de Pedro Crasbeeck.
10. de León P. C. (1553) Crónica del Perú. In: Señorío de los Incas (ed. G. Y. Franklin Pease ), 2005, Venezuela: Biblioteca Ayacucho.
11. de Velasco, J. (1789) Historia del reino de Quito. Edición, prólogo, notas y cronología por Alfredo P. Diez Canseco. pp. XLIX+669. Ecuador. Fundacion Biblioteca Ayacucho, Venezuela.
12. Diamond, J. & Bellwood, P. (2003) Farmers and their languages: The first expansions. Science 300, 597-603.
13. Espinoza Soriano, W. (1999) Etnohistoria Ecuatoriana. Estudios y documentos. Ediciones Abya-Yala, 2da. ed. Quito, Ecuador.
14. Excoffier, L. & Lischer, H. E. L. (2010) Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10, 564-567.
15. Fan, L. & Yao, Y. -G. (2011) MitoTool: A web server for the analysis and retrieval of human mitochondrial DNA sequence variations. Mitochondrion 11, 351-356.
16. Frisancho, A. R. & Klayman, J. E. (1975) A-B-O and Rh affinities between Highland and Lowland Quechua-speaking Peruvian populations. Am J Phys Anthropol 43, 285-290.
17. Gamboa, S. de P. (1572) The History of the Incas. Translated and edited by Bauer and Smith, 2007, University of Texas Press, Austin, USA.
18. García Jordan, P. (2001) En el corazón de las tinieblas... del Putumayo, 1890-1932. Fronteras, caucho, mano de obra indígena y misiones católicas en la nacionalización de la Amazonía. Rev Indias 61, 591-617.
19. García, O. C. D. L. (1999) Historia de las Misiones en la Amazonia Ecuatoriana. 2da ed., Quito, Ecuador.
20. Georges, L., Seidenberg, V., Hummel, S. & Fehren-Schmitz, L. (2012) Molecular characterization of ABO blood group frequencies in pre-Columbian Peruvian highlanders. Am J Phys Anthropol 149, 242-249.
21. Homan, J. (2014) The Cordillera Escalera and the Pueblo Shawi: Ethnohistory. Rapid Biological and Social Inventories Report 26. The Field Museum, Chicago, 167-541.
22. Hornborg, A. (2005) Ethnogenesis, regional integration, and ecology in prehistoric Amazonia. Curr Anthropol 46, 589-620.
23. Jota, M. S., Lacerda, D. R., Sandoval, J. R., Vieira, P. P. R., Santos-Lopes, S. S., Bisso-Machado, R., Paixão-Cortes, V. R., Revollo, S., Paz-Y-Miño, C., Fujita, R., Salzano, F. M., Bonatto, S. L., Bortolini, M. C., Santos, F. R. & The Genographic Consortium (2011) A new subhaplogroup of native American Y-chromosomes from the Andes. Am J Phys Anthropol 146, 553-559.
24. Julien, C. (2002) Diego Maldonado y los Chancas. Revista Andina 34, 183-197.
25. Justice, A., Dean, B. & Crawford, M. H. (2012) Molecular consequences of migration and urbanization in Peruvian Amazonia. In: Causes and consequences of human migration. An evolutionary perspective (eds. M. H. Crawford & B. C. Campbell) . New York: Cambridge University Press.
26. Karafet, T. M., Mendez, F. L., Meilerman, M. B., Underhill, P. A., Zegura, S. L. & Hammer, M. F. (2008) New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res 18, 830-838.
27. Kurin, D. S., Lofaro, E. M., Gómez Choque, D. E. & Krigbaum, J. (2014) A bioarchaeological and biogeochemical study of warfare and mobility in Andahuaylas, Peru (ca. AD 1160-1260). Int J Osteoarchaeol doi:10.1002/oa.2398.
28. Manni, F., Guerard, E. & Heyer, E. (2004) Geographic patterns of (genetic, morphological, linguistic) variation: How barriers can be detected by using Monmonier's algorithm. Hum Biol 76, 173-190.
29. Moscoso, J., Seclen, S., Serrano-Vela, J. I., Villena, A., Martinez-Laso, J., Zamora, J., Moreno, A., Ira-Cachafeiro, J. & Arnaiz-Villena, A. (2006) HLA genes in Lamas Peruvian-Amazonian Amerindians. Mol Immunol 43, 1881-1889.
30. Murúa, M. de (1613) Historia general del Perú y descendencia de los Incas. Ed. de Manuel Ballesteros Gabrois, 1986. Serie Crónicas de América: Historia 16. Madrid, Spain.
31. Nordenskiold, B. E. (1917) The Guarani invasion of the Inca empire in the sixteenth century: An historical Indian migration. Geogr Rev 4, 103-121.
32. Orsúa y Vela, B. A. de (1965) Historia de la villa imperial de Potosí. Edición de L. Hanke y G. Mendoza. Rhode Island, RI: Brown University Press.
33. Palma, L. (2010) Socioeconomía, informe temático. Proyecto Mesozonificación Ecológica y Económica para el desarrollo sostenible del valle del río Apurímac - VRA. Iquitos, Peru: IIAP.
34. Pardo, C. M., Doherty, V. J. & Sangama, S. I. (2001) Los Kechuas Lamistas y la Educación Bilingüe Intercultural: Historia y Razón de un compromiso. Ed. Tarapoto, San Martin, Perú: SAC PT.
35. Ravi Mumford, J. (2012) Vertical empire: The general resettlement of Indians in the colonial Andes. Durham, NC: Duke University Press.
36. Reeve, M. -E. (2014) Amazonian Quichua in the western Amazon regional interaction sphere. Tipití: SALSA 12, 14-27.
37. Rey, D., Areces, C., Enríquez-de-Salamanca, M., Parga-Lozano, C., Abd-El-Fatah, S., Fernández, M. y Arnaiz-Villena, A. (2012) Los primeros pobladores de América y sus relaciones con poblaciones del Océano Pacífico según los genes HLA. Immunología 31, 83-91.
38. Riva Herrera, M. de la (2004) La Conquista de los Motilones, Tabalosos, Maynas y Jibaros. Iquitos, Perú: CETA.
39. Roewer, L., Nothnagel, M., Gusmão, L., Gomes, V., González, M., Corach, D., Sala, A., Alechine, E., Palha, T., Santos, N., Ribeiro-dos-Santos, A., Geppert, M., Willuweit, S., Nagy, M., Zweynert, S., Baeta, M., Núñez, C., Martínez-Jarreta, B., Gonzáles-Andrade, F., Fagundes-de-Carvalho, E., Aparecida-da-Silva, D., Builes, J. J., Turbón, D., Lopez-Parra, A. M., Arroyo-Pardo, E., Toscanini, U., Borjas, L., Barletta, C., Ewart, E., Santos, S. & Krawczak, M. (2013) Continent-wide decoupling of Y chromosomal genetic variation from language and geography in Native South Americans. PLoS Genet. 9, e1003460.
40. Rostworowski, M. (2001) Pachacutec Inca Yupanqui. IEP. Serie: Historia Andina, 23: Lima, Peru.
41. Sandoval, J. R., Lacerda, D. R., Jota, M. S. A., Salazar-Granara, A., Vieira, P. P. R., Acosta, O., Cuellar, C., Revollo, S., Fujita, R., Santos, F. R. & The Genographic Project Consortium (2013b) The genetic history of indigenous populations of the Peruvian and Bolivian Altiplano: The legacy of the Uros. PLoS One 8, e73006.
42. Sandoval, J. R., Salazar-Granara, A., Acosta, O., Castillo-Herrera, W., Fujita, R., Pena, S. D. J. & Santos, F. R. (2013a) Tracing the genomic ancestry of Peruvians reveals a major legacy of pre-Columbian ancestors. J Hum Genet 58, 627-634.
43. San Roman, J. V. (1994) Perfiles Históricos de la Amazonia Peruana, 2da. ed. Iquitos, Perú: CETA, CAAAP, IIAP.
44. Scazzocchio, F. (1981) La Conquete des Motilones du Huallaga Central aux XVIIe et XVIIIe siecles. Bull Inst Fr Et And X, 99-111.
45. Schjellerup, I. (1999) Wayko - Lamas: a Quechua community in the Selva Alta of North Peru under change. Geografisk Tidsskrift, Danish J Geogr Special Issue (I), 199-207.
46. Tarazona-Santos, E., Carvalho-Silva, D. R., Pettener, D., Luiselli, D., De Stefano, G. F., Labarga, C. M., Rickards, O., Tyler-Smith, C., Pena, S. D. & Santos, F. R. (2001) Genetic differentiation in South Amerindians is related to environmental and cultural diversity: Evidence from the Y chromosome. Am J Hum Genet 68, 1485-1496.
47. Taylor, G. (1979) Diccionario normalizado y comparativo quechua: Chachapoyas - Lamas. Paris, France: L'Harmattan.
48. Torero, A. (1964) Los dialectos Quechuas. Separata de Anales Científicos de la Universidad Agraria 2, 446-478.
49. Vazques de Espinoza, A. (1948) Compendio y descripción de las Indias occidentales. Smithsonian miscellaneous collections volumen 108. The Smithsonian Institution, Washington, USA.
50. Walker, R. S. & Ribeiro, L. A. (2011) Bayesian phylogeography of the Arawak expansion in lowland South America. Proc R Soc B 278, 2562-2567.
51. Zerjal, T., Dashnyam, B., Pandya, A., Kayser, M., Rower, L., Santos, F. R., Schiefenhövel, W., Fretwell, N., Jobling, M. A., Harihara, S., Shimizu, K., Semjidmaa, D., Sajantila, A., Salo, P., Crawford, M. H., Ginter, E. K., Evgrafov, O. V. & Tyler-Smith, C. (1997) Genetic relationships of Asians and northern Europeans revealed by Y-chromosomal DNA analysis. Am J Hum Genet 60, 1174-1183.