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Volumn 6, Issue , 2016, Pages

A tRNA methyltransferase paralog is important for ribosome stability and cell division in Trypanosoma brucei

Author keywords

[No Author keywords available]

Indexed keywords

METHYLTRANSFERASE; PROTOZOAL PROTEIN;

EID: 84958576339     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep21438     Document Type: Article
Times cited : (9)

References (44)
  • 1
    • 0015505849 scopus 로고
    • Discontinuity of 26 S rRNA in Acanthamoeba castellani
    • Stevens, A. R. & Pachler, P. F. Discontinuity of 26 S rRNA in Acanthamoeba castellani. J. Mol. Biol. 66, 225-237 (1972).
    • (1972) J. Mol. Biol. , vol.66 , pp. 225-237
    • Stevens, A.R.1    Pachler, P.F.2
  • 2
    • 0016853624 scopus 로고
    • Demonstration of intact 26 S ribosomal RNA molecules in Drosophila cells
    • Jordan, B. R. Demonstration of intact 26 S ribosomal RNA molecules in Drosophila cells. J. Mol. Biol. 98, 277-280 (1975).
    • (1975) J. Mol. Biol. , vol.98 , pp. 277-280
    • Jordan, B.R.1
  • 3
    • 0032569971 scopus 로고    scopus 로고
    • Processing of precursor rRNA in Euglena gracilis: Identification of intermediates in the pathway to a highly fragmented large subunit rRNA
    • Greenwood, S. J. & Gray, M. W. Processing of precursor rRNA in Euglena gracilis: identification of intermediates in the pathway to a highly fragmented large subunit rRNA. Biochim. Biophys. Acta 1443, 128-138 (1998).
    • (1998) Biochim. Biophys. Acta , vol.1443 , pp. 128-138
    • Greenwood, S.J.1    Gray, M.W.2
  • 4
    • 0019499473 scopus 로고
    • Unusual pattern of ribonucleic acid components in the ribosome of Crithidia fasciculata, a trypanosomatid protozoan
    • Gray, M. W. Unusual pattern of ribonucleic acid components in the ribosome of Crithidia fasciculata, a trypanosomatid protozoan. Mol. Cell. Biol. 1, 347-357 (1981).
    • (1981) Mol. Cell. Biol. , vol.1 , pp. 347-357
    • Gray, M.W.1
  • 5
    • 0023045658 scopus 로고
    • Three small RNAs within the 10 kb trypanosome rRNA transcription unit are analogous to Domain VII of other eukaryotic 28S rRNAs
    • White, T. C., Rudenko, G. & Borst, P. Three small RNAs within the 10 kb trypanosome rRNA transcription unit are analogous to Domain VII of other eukaryotic 28S rRNAs. Nucleic Acids Res. 14, 9471-9489 (1986).
    • (1986) Nucleic Acids Res. , vol.14 , pp. 9471-9489
    • White, T.C.1    Rudenko, G.2    Borst, P.3
  • 6
    • 84874191297 scopus 로고    scopus 로고
    • High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
    • Hashem, Y. et al. High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome. Nature 494, 385-9 (2013).
    • (2013) Nature , vol.494 , pp. 385-389
    • Hashem, Y.1
  • 7
    • 35348850287 scopus 로고    scopus 로고
    • Two trypanosome-specific proteins are essential factors for 5S rRNA abundance and ribosomal assembly in Trypanosoma brucei
    • Hellman, K. M. et al. Two trypanosome-specific proteins are essential factors for 5S rRNA abundance and ribosomal assembly in Trypanosoma brucei. Eukaryot. Cell 6, 1766-72 (2007).
    • (2007) Eukaryot. Cell , vol.6 , pp. 1766-1772
    • Hellman, K.M.1
  • 8
    • 84876860902 scopus 로고    scopus 로고
    • Post-transcriptional regulation of the trypanosome heat shock response by a zinc finger protein
    • Droll, D. et al. Post-transcriptional regulation of the trypanosome heat shock response by a zinc finger protein. PLoS Pathog. 9, e1003286 (2013).
    • (2013) PLoS Pathog. , vol.9
    • Droll, D.1
  • 9
    • 13744261499 scopus 로고    scopus 로고
    • Species specificity in ribosome biogenesis: A nonconserved phosphoprotein is required for formation of the large ribosomal subunit in Trypanosoma brucei
    • Jensen, B. C., Brekken, D. L., Randall, A. C., Kifer, C. T. & Parsons, M. Species specificity in ribosome biogenesis: a nonconserved phosphoprotein is required for formation of the large ribosomal subunit in Trypanosoma brucei. Eukaryot. Cell 4, 30-5 (2005).
    • (2005) Eukaryot. Cell , vol.4 , pp. 30-35
    • Jensen, B.C.1    Brekken, D.L.2    Randall, A.C.3    Kifer, C.T.4    Parsons, M.5
  • 10
    • 0042858143 scopus 로고    scopus 로고
    • The NOG1 GTP-binding protein is required for biogenesis of the 60 S ribosomal subunit
    • Jensen, B. C., Wang, Q., Kifer, C. T. & Parsons, M. The NOG1 GTP-binding protein is required for biogenesis of the 60 S ribosomal subunit. J. Biol. Chem. 278, 32204-11 (2003).
    • (2003) J. Biol. Chem. , vol.278 , pp. 32204-32211
    • Jensen, B.C.1    Wang, Q.2    Kifer, C.T.3    Parsons, M.4
  • 11
    • 84884690849 scopus 로고    scopus 로고
    • Ribosome biogenesis requires a highly diverged XRN family 5′-3′ exoribonuclease for rRNA processing in Trypanosoma brucei
    • Sakyiama, J., Zimmer, S. L., Ciganda, M., Williams, N. & Read, L. K. Ribosome biogenesis requires a highly diverged XRN family 5′-3′ exoribonuclease for rRNA processing in Trypanosoma brucei. RNA 19, 1419-1431 (2013).
    • (2013) RNA , vol.19 , pp. 1419-1431
    • Sakyiama, J.1    Zimmer, S.L.2    Ciganda, M.3    Williams, N.4    Read, L.K.5
  • 12
    • 84901392580 scopus 로고    scopus 로고
    • Ribosome biogenesis in African trypanosomes requires conserved and trypanosomespecific factors
    • Umaer, K., Ciganda, M. & Williams, N. Ribosome biogenesis in African trypanosomes requires conserved and trypanosomespecific factors. Eukaryot. Cell 13, 727-737 (2014).
    • (2014) Eukaryot. Cell , vol.13 , pp. 727-737
    • Umaer, K.1    Ciganda, M.2    Williams, N.3
  • 13
    • 84887113964 scopus 로고    scopus 로고
    • Ribosome biogenesis in the yeast Saccharomyces cerevisiae
    • Woolford, J. L. & Baserga, S. J. Ribosome biogenesis in the yeast Saccharomyces cerevisiae. Genetics 195, 643-681 (2013).
    • (2013) Genetics , vol.195 , pp. 643-681
    • Woolford, J.L.1    Baserga, S.J.2
  • 16
    • 79956189938 scopus 로고    scopus 로고
    • A domain of the actin binding protein Abp140 is the yeast methyltransferase responsible for 3-methylcytidine modification in the tRNA anti-codon loop
    • Silva, S. D., Haider, S. J. & Phizicky, E. M. A domain of the actin binding protein Abp140 is the yeast methyltransferase responsible for 3-methylcytidine modification in the tRNA anti-codon loop. RNA 17, 1100-1110 (2011).
    • (2011) RNA , vol.17 , pp. 1100-1110
    • Silva, S.D.1    Haider, S.J.2    Phizicky, E.M.3
  • 17
    • 79956191573 scopus 로고    scopus 로고
    • Actin-binding protein ABP140 is a methyltransferase for 3-methylcytidine at position 32 of tRNAs in Saccharomyces cerevisiae
    • Noma, A. et al. Actin-binding protein ABP140 is a methyltransferase for 3-methylcytidine at position 32 of tRNAs in Saccharomyces cerevisiae. RNA 17, 1111-1119 (2011).
    • (2011) RNA , vol.17 , pp. 1111-1119
    • Noma, A.1
  • 19
    • 84876536945 scopus 로고    scopus 로고
    • The T . brucei TRM5 methyltransferase plays an essential role in mitochondrial protein synthesis and function
    • Paris, Z. et al. The T . brucei TRM5 methyltransferase plays an essential role in mitochondrial protein synthesis and function. RNA 19, 649-658 (2013).
    • (2013) RNA , vol.19 , pp. 649-658
    • Paris, Z.1
  • 20
    • 84922020381 scopus 로고    scopus 로고
    • An integrated genomics approach identifies drivers of proliferation in luminal-subtype human breast cancer
    • Gatza, M. L., Silva, G. O., Parker, J. S., Fan, C. & Perou, C. M. An integrated genomics approach identifies drivers of proliferation in luminal-subtype human breast cancer. Nat. Genet. 46, 1051-1059 (2014).
    • (2014) Nat. Genet. , vol.46 , pp. 1051-1059
    • Gatza, M.L.1    Silva, G.O.2    Parker, J.S.3    Fan, C.4    Perou, C.M.5
  • 21
    • 0036860235 scopus 로고    scopus 로고
    • Targeting of a tetracycline-inducible expression system to the transcriptionally silent minichromosomes of Trypanosoma brucei
    • Wickstead, B., Ersfeld, K. & Gull, K. Targeting of a tetracycline-inducible expression system to the transcriptionally silent minichromosomes of Trypanosoma brucei. Mol. Biochem. Parasitol. 125, 211-216 (2002).
    • (2002) Mol. Biochem. Parasitol. , vol.125 , pp. 211-216
    • Wickstead, B.1    Ersfeld, K.2    Gull, K.3
  • 23
    • 80052344748 scopus 로고    scopus 로고
    • RNA interference in protozoan parasites: Achievements and challenges
    • Kolev, N. G., Tschudi, C. & Ullu, E. RNA interference in protozoan parasites: achievements and challenges. Eukaryot. Cell 10, 1156-63 (2011).
    • (2011) Eukaryot. Cell , vol.10 , pp. 1156-1163
    • Kolev, N.G.1    Tschudi, C.2    Ullu, E.3
  • 24
    • 45249105994 scopus 로고    scopus 로고
    • The structural mechanics of cell division in Trypanosoma brucei
    • Vaughan, S. & Gull, K. The structural mechanics of cell division in Trypanosoma brucei. Biochem. Soc. Trans. 36, 421-4 (2008).
    • (2008) Biochem. Soc. Trans. , vol.36 , pp. 421-424
    • Vaughan, S.1    Gull, K.2
  • 25
    • 0015880882 scopus 로고
    • The dissociation of Escherichia coli ribosomes
    • Ball, L., Johnson, P. & Walker, I. The dissociation of Escherichia coli ribosomes. J. Biochem. 37, 12-20 (1973).
    • (1973) J. Biochem. , vol.37 , pp. 12-20
    • Ball, L.1    Johnson, P.2    Walker, I.3
  • 26
    • 80053321198 scopus 로고    scopus 로고
    • Complete modification maps for the cytosolic small and large subunit rRNAs of Euglena gracilis: Functional and evolutionary implications of contrasting patterns between the two rRNA components
    • Schnare, M. N. & Gray, M. W. Complete modification maps for the cytosolic small and large subunit rRNAs of Euglena gracilis: functional and evolutionary implications of contrasting patterns between the two rRNA components. J. Mol. Biol. 413, 66-83 (2011).
    • (2011) J. Mol. Biol. , vol.413 , pp. 66-83
    • Schnare, M.N.1    Gray, M.W.2
  • 27
    • 0019120909 scopus 로고
    • Isolation and characterization of polysomes from Trypanosoma brucei
    • Cordingley, J. S. & Turner, M. J. Isolation and characterization of polysomes from Trypanosoma brucei. Parasitology 81, 537-51 (1980).
    • (1980) Parasitology , vol.81 , pp. 537-551
    • Cordingley, J.S.1    Turner, M.J.2
  • 28
    • 0037474205 scopus 로고    scopus 로고
    • A dispensable yeast ribosomal protein optimizes peptidyltransferase activity and affects translocation
    • Dresios, J., Panopoulos, P., Suzuki, K. & Synetos, D. A dispensable yeast ribosomal protein optimizes peptidyltransferase activity and affects translocation. J. Biol. Chem. 278, 3314-22 (2003).
    • (2003) J. Biol. Chem. , vol.278 , pp. 3314-3322
    • Dresios, J.1    Panopoulos, P.2    Suzuki, K.3    Synetos, D.4
  • 29
    • 36248998866 scopus 로고    scopus 로고
    • Human ribosomal protein L13a is dispensable for canonical ribosome function but indispensable for efficient rRNA methylation
    • Chaudhuri, S. et al. Human ribosomal protein L13a is dispensable for canonical ribosome function but indispensable for efficient rRNA methylation. RNA 13, 2224-2237 (2007).
    • (2007) RNA , vol.13 , pp. 2224-2237
    • Chaudhuri, S.1
  • 30
    • 40649110933 scopus 로고    scopus 로고
    • Elucidating the role of C/D snoRNA in rRNA processing and modification in Trypanosoma brucei
    • Barth, S. et al. Elucidating the role of C/D snoRNA in rRNA processing and modification in Trypanosoma brucei. Eukaryot. Cell 7, 86-101 (2008).
    • (2008) Eukaryot. Cell , vol.7 , pp. 86-101
    • Barth, S.1
  • 31
    • 84861913529 scopus 로고    scopus 로고
    • 40S subunit dissociation and proteasome-dependent RNA degradation in nonfunctional 25S rRNA decay
    • Fujii, K., Kitabatake, M., Sakata, T. & Ohno, M. 40S subunit dissociation and proteasome-dependent RNA degradation in nonfunctional 25S rRNA decay. EMBO J. 31, 2579-89 (2012).
    • (2012) EMBO J. , vol.31 , pp. 2579-2589
    • Fujii, K.1    Kitabatake, M.2    Sakata, T.3    Ohno, M.4
  • 32
    • 0032905074 scopus 로고    scopus 로고
    • Molecular cloning and biochemical characterization of a VCP homolog in African trypanosomes
    • Roggy, J. L. & Bangs, J. D. Molecular cloning and biochemical characterization of a VCP homolog in African trypanosomes. Mol. Biochem. Parasitol. 98, 1-15 (1999).
    • (1999) Mol. Biochem. Parasitol. , vol.98 , pp. 1-15
    • Roggy, J.L.1    Bangs, J.D.2
  • 33
    • 0038521266 scopus 로고    scopus 로고
    • Biochemical Analysis of the 20 S Proteasome of Trypanosoma brucei
    • Wang, C. C. et al. Biochemical Analysis of the 20 S Proteasome of Trypanosoma brucei. J. Biol. Chem. 278, 15800-15808 (2003).
    • (2003) J. Biol. Chem. , vol.278 , pp. 15800-15808
    • Wang, C.C.1
  • 34
    • 84918590647 scopus 로고    scopus 로고
    • 60S ribosome biogenesis requires rotation of the 5S ribonucleoprotein particle
    • Leidig, C. et al. 60S ribosome biogenesis requires rotation of the 5S ribonucleoprotein particle. Nat. Commun. 5, 3491 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 3491
    • Leidig, C.1
  • 35
    • 84875491600 scopus 로고    scopus 로고
    • Defining the RNA-protein interactions in the trypanosome preribosomal complex
    • Wang, L., Ciganda, M. & Williams, N. Defining the RNA-protein interactions in the trypanosome preribosomal complex. Eukaryot. Cell 12, 559-66 (2013).
    • (2013) Eukaryot. Cell , vol.12 , pp. 559-566
    • Wang, L.1    Ciganda, M.2    Williams, N.3
  • 36
    • 79952331212 scopus 로고    scopus 로고
    • The Bowen-Conradi syndrome protein Nep1 (Emg1) has a dual role in eukaryotic ribosome biogenesis, as an essential assembly factor and in the methylation of Ψ1191 in yeast 18S rRNA
    • Meyer, B. et al. The Bowen-Conradi syndrome protein Nep1 (Emg1) has a dual role in eukaryotic ribosome biogenesis, as an essential assembly factor and in the methylation of Ψ1191 in yeast 18S rRNA. Nucleic Acids Res. 39, 1526-37 (2011).
    • (2011) Nucleic Acids Res. , vol.39 , pp. 1526-1537
    • Meyer, B.1
  • 37
    • 77952314717 scopus 로고    scopus 로고
    • The ribosome assembly factor Nep1 responsible for Bowen-Conradi syndrome is a pseudouridine-N1-specific methyltransferase
    • Wurm, J. P. et al. The ribosome assembly factor Nep1 responsible for Bowen-Conradi syndrome is a pseudouridine-N1-specific methyltransferase. Nucleic Acids Res. 38, 2387-98 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. 2387-2398
    • Wurm, J.P.1
  • 38
    • 43249099857 scopus 로고    scopus 로고
    • Bud23 Methylates G1575 of 18S rRNA and Is Required for Efficient Nuclear Export of Pre-40S Subunits
    • White, J. et al. Bud23 Methylates G1575 of 18S rRNA and Is Required for Efficient Nuclear Export of Pre-40S Subunits. Mol. Cell. Biol. 28, 3151-3161 (2008).
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 3151-3161
    • White, J.1
  • 39
    • 84942135052 scopus 로고    scopus 로고
    • The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot
    • Sardana, R. et al. The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot. PLoS Biol. 13, e1002083 (2015).
    • (2015) PLoS Biol. , vol.13
    • Sardana, R.1
  • 40
    • 33845344703 scopus 로고    scopus 로고
    • Characterization of Protein Kinase CK2 from Trypanosoma brucei
    • Jensen, B. et al. Characterization of Protein Kinase CK2 from Trypanosoma brucei. Mol. Biochem. Parasitol. 151, 28-40 (2007).
    • (2007) Mol. Biochem. Parasitol. , vol.151 , pp. 28-40
    • Jensen, B.1
  • 41
    • 77954619982 scopus 로고    scopus 로고
    • The Fe/S cluster assembly protein Isd11 is essential for tRNA thiolation in Trypanosoma brucei
    • Paris, Z. et al. The Fe/S cluster assembly protein Isd11 is essential for tRNA thiolation in Trypanosoma brucei. J. Biol. Chem. 285, 22394-402 (2010).
    • (2010) J. Biol. Chem. , vol.285 , pp. 22394-22402
    • Paris, Z.1
  • 42
    • 0023277545 scopus 로고
    • Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate-Phenol-Chloroform Extraction
    • Chomczynski, P. & Sacchi, N. Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate-Phenol-Chloroform Extraction. Anal. Biochem. 162, 156-159 (1987).
    • (1987) Anal. Biochem. , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 43
    • 0020407633 scopus 로고
    • Purification of nuclei from a flagellate protozoan, Trypanosoma brucei
    • Shapiro, S. Z. & Doxsey, S. J. Purification of nuclei from a flagellate protozoan, Trypanosoma brucei. Anal. Biochem. 127, 112-115 (1982).
    • (1982) Anal. Biochem. , vol.127 , pp. 112-115
    • Shapiro, S.Z.1    Doxsey, S.J.2
  • 44
    • 44949231424 scopus 로고    scopus 로고
    • Analyzing real-time PCR data by the comparative C(T) method
    • Schmittgen, T. D. & Livak, K. J. Analyzing real-time PCR data by the comparative C(T) method. Nat. Protoc. 3, 1101-1108 (2008).
    • (2008) Nat. Protoc. , vol.3 , pp. 1101-1108
    • Schmittgen, T.D.1    Livak, K.J.2


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