Biochemical and full genome sequence analyses of clinical Vibrio cholerae isolates in Mexico reveals the presence of novel V. cholerae strains

Microbes and Infection

Volumn 18, Issue 5, 2016, Pages 322-328

  Díaz Quiñonez, José Alberto ^a,b   Hernández Monroy, Irma ^a   Montes Colima, Norma Angélica ^a   Moreno Pérez, María Asunción ^a   Galicia Nicolás, Adriana Guadalupe ^a   López Martínez, Irma ^a   Ruiz Matus, Cuitláhuac ^c   Kuri Morales, Pablo ^d   Ortíz Alcántara, Joanna María ^a   Garcés Ayala, Fabiola ^a   Ramírez González, José Ernesto ^a  

^a Instituto Nacional de Diagnostico y Referencia Epidemiologicos   (Mexico)

^b UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

^c Dirección General de Epidemiología   (Mexico)

^d Subsecretaría de Prevención and Promoción de la Salud   (Mexico)

Author keywords

Cholera; Disease control; PFGE; Phylogenomics; Vibrio cholerae

Indexed keywords

AMOXICILLIN; AMPICILLIN; CIPROFLOXACIN; COTRIMOXAZOLE; LEVOFLOXACIN; NITROFURANTOIN; TETRACYCLINE; BACTERIAL DNA;

ADOLESCENT; ADULT; AGED; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENETICS; BACTERIAL VIRULENCE; BIOCHEMISTRY; CHILD; FEMALE; GENE SEQUENCE; GENE STRUCTURE; GENOME ANALYSIS; GENOMICS; HIDALGO; HUMAN; MAJOR CLINICAL STUDY; MALE; MOLECULAR EPIDEMIOLOGY; NEXT GENERATION SEQUENCING; NONHUMAN; PATHOGENICITY ISLAND; PHYLOGENY; PRIORITY JOURNAL; SEROTYPING; VIBRIO CHOLERAE; VIBRIO CHOLERAE O1; VIBRIO CHOLERAE OGAWA; BACTERIAL GENOME; BACTERIUM IDENTIFICATION; CHEMISTRY; CHOLERA; CLASSIFICATION; DNA SEQUENCE; EPIDEMIC; GENE ORDER; GENETICS; ISOLATION AND PURIFICATION; MEXICO; MICROBIOLOGY; MIDDLE AGED; PHYSIOLOGY; PRESCHOOL CHILD; SYNTENY; VERY ELDERLY; YOUNG ADULT;

ADOLESCENT; ADULT; AGED; AGED, 80 AND OVER; BACTERIAL TYPING TECHNIQUES; CHILD; CHILD, PRESCHOOL; CHOLERA; DISEASE OUTBREAKS; DNA, BACTERIAL; FEMALE; GENE ORDER; GENOME, BACTERIAL; HUMANS; MALE; MEXICO; MIDDLE AGED; SEQUENCE ANALYSIS, DNA; SYNTENY; VIBRIO CHOLERAE O1; YOUNG ADULT;

EID: 84958555010     PISSN: 12864579     EISSN: 1769714X     Source Type: Journal    
DOI: 10.1016/j.micinf.2016.01.004     Document Type: Article

References (14)

1. [1] Sack, D.A., Sack, R.B., Nair, G.B., Siddique, A.K., Cholera. Lancet 363 (2004), 223–233.
2. [2] Harris, J.B., LaRocque, R.C., Qadri, F., Ryan, E.T., Calderwood, S.B., Cholera. Lancet 379 (2012), 2466–2476.
3. [3] Page, A.L., Ciglenecki, I., Jasmin, E.R., Desvignes, L., Grandesso, F., Polonsky, J., et al. Geographic distribution and mortality risk factors during the cholera outbreak in a rural region of Haiti 2010–2011. PLoS Negl Trop Dis, 26, 2015 e0003605.
4. [4] Alam, M., Islam, M.T., Rashed, S.M., Johura, F.T., Bhuiyan, N.A., Delgado, G., et al. Vibrio cholerae classical biotype strains reveal distinct signatures in Mexico. J Clin Microbiol 50 (2012), 2212–2216.
5. [5] Waldor, M.K., Tschape, H., Mekalanos, J.J., A new type of conjugative transposon encodes resistance to sulfamethoxazole, trimethoprim, and streptomycin in Vibrio cholerae 0139. J Bacteriol 178 (1996), 4157–4165.
6. + El Tor carrying an additional truncated CTX prophage. Proc Natl Acad Sci U S A 27 (2014), 9917–9922.
7. [7] Talkington, D., Bopp, C., Tarr, C., Parsons, M.B., Dahourou, G., Freeman, M., et al. Characterization of toxigenic Vibrio cholerae from Haiti, 2010–2011. Emerg Infect Dis 17 (2011), 2122–2129.
8. [8] Clinical and Laboratory Standards Institute, Performance Standards for Antimicrobial Susceptibility Testing, Twenty Third Informational Supplement. 2013, CLSI, Wayne, PA, USA M100-S23.
9. [9] Stellwagen, N.C., Electrophoresis of DNA in agarose gels, polyacrylamide gels and in free solution. Electrophoresis, 2009, S188–S195.
10. [10] Cameron, D.N., Khambaty, F.M., Wachsmuth, I.K., Tauxe, R.V., Barrett, T.J., Molecular characterization of Vibrio cholerae O1 strains by pulsed-field gel electrophoresis. J Clin Microbiol 32 (1994), 1685–1690.
11. [11] Reyes, M.A., Méndez, A., Maldonado, R., Doktycz, M.J., Fleming, J.T., Beattie, K.L., Fingerprinting of prokaryotic 16S rRNA genes using oligodeoxyribonucleotide microarrays and virtual hybridization. Nucleic Acid Res 31 (2003), 779–789.
12. [12] Díaz-Quiñonez, J.A., Hernández-Monroy, I., López-Martínez, I., Ortiz-Alcántara, J., González-Durán, E., Ruiz-Matus, C., et al. Genome sequence of Vibrio cholerae strain O1 ogawa El Tor, isolated in Mexico, 2013. Genome Announc, 2, 2014 e01123-14.
13. [13] Jackson, B.R., Talkington, D.F., Pruckler, J.M., Fouché, M.D.B., Lafosse, E., Nygren, B., et al. Seroepidemiologic survey of epidemic cholera in Haiti to assess spectrum of illness and risk factors for severe disease. Am J Trop Med Hyg 89 (2013), 654–664.
14. [14] Reimer, A.R., VanDomselaar, G., Stroika, S., Walker, M., Kent, H., Tarr, C., et al. Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa. Emerg Infect Dis 11 (2011), 2113–2121.