LOB Domain Proteins: Beyond Lateral Organ Boundaries

Trends in Plant Science

Volumn 21, Issue 2, 2016, Pages 159-167

  Xu, Changzheng ^a   Luo, Feng ^a   Hochholdinger, Frank ^b  

^a SOUTHWEST UNIVERSITY   (China)

^b UNIVERSITY OF BONN   (Germany)

Author keywords

Lateral organ boundary domain; LBD proteins; Phytohormone; Plant development

Indexed keywords

PLANT PROTEIN; PROTEIN BINDING;

ANTIBODY SPECIFICITY; CHEMISTRY; METABOLISM; PLANT DEVELOPMENT; PROTEIN TERTIARY STRUCTURE;

ORGAN SPECIFICITY; PLANT DEVELOPMENT; PLANT PROTEINS; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY;

EID: 84958057334     PISSN: 13601385     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tplants.2015.10.010     Document Type: Review

References (65)

1. Shuai B., et al. The lateral organ boundaries gene defines a novel, plant-specific gene family. Plant Physiol. 2002, 129:747-761.
2. Iwakawa H., et al. The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant Cell Physiol. 2002, 43:467-478.
3. Majer C., Hochholdinger F. Defining the boundaries: structure and function of LOB domain proteins. Trends Plant Sci. 2011, 16:47-52.
4. Lee H.W., et al. The conserved proline residue in the LOB domain of LBD18 is critical for DNA-binding and biological function. Mol. Plant 2013, 6:1722-1725.
5. Majer C., et al. Molecular interactions of ROOTLESS CONCERNING CROWN AND SEMINAL ROOTS, a LOB domain protein regulating shoot-borne root initiation in maize (Zea mays L.). Philos. Trans. R. Soc. Lond. B: Biol. Sci. 2012, 367:1542-1551.
6. Kim M.J., et al. LATERAL ORGAN BOUNDARIES DOMAIN (LBD)10 interacts with SIDECAR POLLEN/LBD27 to control pollen development in Arabidopsis. Plant J. 2015, 81:794-809.
7. Berckmans B., et al. Auxin-dependent cell cycle reactivation through transcriptional regulation of Arabidopsis E2Fa by lateral organ boundary proteins. Plant Cell 2011, 23:3671-3683.
8. Rast M.I., Simon R. Arabidopsis JAGGED LATERAL ORGANS acts with ASYMMETRIC LEAVES2 to coordinate KNOX and PIN expression in shoot and root meristems. Plant Cell 2012, 24:2917-2933.
9. Liu H., et al. ARL1, a LOB-domain protein required for adventitious root formation in rice. Plant J. 2005, 43:47-56.
10. Kim M.J., Kim J. Identification of nuclear localization signal in ASYMMETRIC LEAVES2-LIKE18/LATERAL ORGAN BOUNDARIES DOMAIN16 (ASL18/LBD16) from Arabidopsis. J. Plant Physiol. 2012, 169:1221-1226.
11. Oh S.A., et al. The SIDECAR POLLEN gene encodes a microspore-specific LOB/AS2 domain protein required for the correct timing and orientation of asymmetric cell division. Plant J. 2010, 64:839-850.
12. Oh S.A., et al. SIDECAR POLLEN suggests a plant-specific regulatory network underlying asymmetric microspore division in Arabidopsis. Plant Signal. Behav. 2011, 6:416-419.
13. Sugimoto K., et al. Arabidopsis regeneration from multiple tissues occurs via a root development pathway. Dev. Cell 2010, 18:463-471.
14. Fan M., et al. LATERAL ORGAN BOUNDARIES DOMAIN transcription factors direct callus formation in Arabidopsis regeneration. Cell Res. 2012, 22:1169-1180.
15. Liu J.C., et al. WOX11 and 12 are involved in the first-step cell fate transition during de novo root organogenesis in Arabidopsis. Plant Cell 2014, 26:1081-1093.
16. Thatcher L.F., et al. The lateral organ boundaries domain transcription factor LBD20 functions in Fusarium wilt susceptibility and jasmonate signaling in Arabidopsis. Plant Physiol. 2012, 160:407-418.
17. Thatcher L.F., et al. Lateral organ boundaries domain transcription factors: new roles in plant defense. Plant Signal. Behav. 2012, 7:1702-1704.
18. Hu Y., et al. Lateral organ boundaries 1 is a disease susceptibility gene for citrus bacterial canker disease. Proc. Natl. Acad. Sci. U.S.A. 2014, 111:E521-E529.
19. Cabrera J., et al. A role for LATERAL ORGAN BOUNDARIES-DOMAIN 16 during the interaction Arabidopsis-Meloidogyne spp. provides a molecular link between lateral root and root-knot nematode feeding site development. New Phytol. 2014, 203:632-645.
20. Cabrera J., et al. Genes co-regulated with LBD16 in nematode feeding sites inferred from in silico analysis show similarities to regulatory circuits mediated by the auxin/cytokinin balance in Arabidopsis. Plant Signal. Behav. 2015, 10:e990825.
21. Mangeon A., et al. Misregulation of the LOB domain gene DDA1 suggests possible functions in auxin signalling and photomorphogenesis. J. Exp. Bot. 2011, 62:221-233.
22. Mangeon A., et al. Functional divergence in the Arabidopsis LOB-domain gene family. Plant Signal. Behav. 2012, 7:1544-1547.
23. Soyano T., et al. ASYMMETRIC LEAVES2-LIKE19/LATERAL ORGAN BOUNDARIES DOMAIN30 and ASL20/LBD18 regulate tracheary element differentiation in Arabidopsis. Plant Cell 2008, 20:3359-3373.
24. Yamaguchi M., et al. VND-INTERACTING2, a NAC domain transcription factor, negatively regulates xylem vessel formation in Arabidopsis. Plant Cell 2010, 22:1249-1263.
25. Yordanov Y.S., Busov V. Boundary genes in regulation and evolution of secondary growth. Plant Signal. Behav. 2011, 6:688-690.
26. Yordanov Y.S., et al. Members of the LATERAL ORGAN BOUNDARIES DOMAIN transcription factor family are involved in the regulation of secondary growth in Populus. Plant Cell 2010, 22:3662-3677.
27. Cortizo M., Laufs P. Genetic basis of the 'sleeping leaves' revealed. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:11474-11475.
28. Chen J., et al. Conserved genetic determinant of motor organ identity in Medicago truncatula and related legumes. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:11723-11728.
29. Zhou C., et al. Identification and characterization of petiolule-like pulvinus mutants with abolished nyctinastic leaf movement in the model legume Medicago truncatula. New Phytol. 2012, 196:92-100.
30. Ge L.F., et al. Regulation of compound leaf development by PHANTASTICA in Medicago truncatula. Plant Physiol. 2014, 164:216-228.
31. Bureau M., et al. JAGGED LATERAL ORGAN (JLO) controls auxin dependent patterning during development of the Arabidopsis embryo and root. Plant Mol. Biol. 2010, 74:479-491.
32. Borghi L., et al. Arabidopsis JAGGED LATERAL ORGANS is expressed in boundaries and coordinates KNOX and PIN activity. Plant Cell 2007, 19:1795-1808.
33. Guo M., et al. Direct repression of KNOX loci by the ASYMMETRIC LEAVES1 complex of Arabidopsis. Plant Cell 2008, 20:48-58.
34. Lin W.C., et al. The Arabidopsis LATERAL ORGAN BOUNDARIES-domain gene ASYMMETRIC LEAVES2 functions in the repression of KNOX gene expression and in adaxial-abaxial patterning. Plant Cell 2003, 15:2241-2252.
35. Bureau M., Simon R. JLO regulates embryo patterning and organ initiation by controlling auxin transport. Plant Signal. Behav. 2008, 3:145-147.
36. Aida M., et al. The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche. Cell 2004, 119:109-120.
37. Galinha C., et al. PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development. Nature 2007, 449:1053-1057.
38. Chen X.F., et al. Quantitative control of ASYMMETRIC LEAVES2 expression is critical for leaf axial patterning in Arabidopsis. J. Exp. Bot. 2013, 64:4895-4905.
39. Sun X., et al. Arabidopsis ASL11/LBD15 is involved in shoot apical meristem development and regulates WUS expression. Planta 2013, 237:1367-1378.
40. Zhu L., et al. Ectopic expression of LBD15 affects lateral branch development and secondary cell wall synthesis in Arabidopsis thaliana. Plant Growth Regul. 2014, 73:111-120.
41. Gendron J.M., et al. Brassinosteroids regulate organ boundary formation in the shoot apical meristem of Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:21152-21157.
42. Sun Y., et al. Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis. Dev. Cell 2010, 19:765-777.
43. Bell E.M., et al. Arabidopsis lateral organ boundaries negatively regulates brassinosteroid accumulation to limit growth in organ boundaries. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:21146-21151.
44. Husbands A., et al. LATERAL ORGAN BOUNDARIES defines a new family of DNA-binding transcription factors and can interact with specific bHLH proteins. Nucleic Acids Res. 2007, 35:6663-6671.
45. Evans M.M. The indeterminate gametophyte1 gene of maize encodes a LOB domain protein required for embryo Sac and leaf development. Plant Cell 2007, 19:46-62.
46. Zhang J., et al. Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice. J. Exp. Bot. 2015, 66:99-112.
47. Coudert Y., et al. ASL/LBD phylogeny suggests that genetic mechanisms of root initiation downstream of auxin are distinct in lycophytes and euphyllophytes. Mol. Biol. Evol. 2013, 30:569-572.
48. Okushima Y., et al. ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis. Plant Cell 2007, 19:118-130.
49. Lee H.W., et al. LBD18/ASL20 regulates lateral root formation in combination with LBD16/ASL18 downstream of ARF7 and ARF19 in Arabidopsis. Plant Physiol. 2009, 151:1377-1389.
50. Feng Z., et al. Effects of three auxin-inducible LBD members on lateral root formation in Arabidopsis thaliana. Planta 2012, 236:1227-1237.
51. Goh T., et al. The establishment of asymmetry in Arabidopsis lateral root founder cells is regulated by LBD16/ASL18 and related LBD/ASL proteins. Development 2012, 139:883-893.
52. Feng Z., et al. LBD29 regulates the cell cycle progression in response to auxin during lateral root formation in Arabidopsis thaliana. Ann. Bot. 2012, 110:1-10.
53. Lee H.W., et al. LBD18 acts as a transcriptional activator that directly binds to the EXPANSIN14 promoter in promoting lateral root emergence of Arabidopsis. Plant J. 2012, 73:212-224.
54. Lee H.W., Kim J. EXPANSINA17 up-regulated by LBD18/ASL20 promotes lateral root formation during the auxin response. Plant Cell Physiol. 2013, 54:1600-1611.
55. Kim J., Lee H.W. Direct activation of EXPANSIN14 by LBD18 in the gene regulatory network of lateral root formation in Arabidopsis. Plant Signal. Behav. 2013, 8:e22979.
56. Lee H.W., et al. GIP1 may act as a coactivator that enhances transcriptional activity of LBD18 in Arabidopsis. J. Plant Physiol. 2014, 171:14-18.
57. Kang N.Y., et al. The AP2/EREBP gene PUCHI co-acts with LBD16/ASL18 and LBD18/ASL20 downstream of ARF7 and ARF19 to regulate lateral root development in Arabidopsis. Plant Cell Physiol. 2013, 54:1326-1334.
58. Inukai Y., et al. Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling. Plant Cell 2005, 17:1387-1396.
59. Taramino G., et al. The maize (Zea mays L.) RTCS gene encodes a LOB domain protein that is a key regulator of embryonic seminal and post-embryonic shoot-borne root initiation. Plant J. 2007, 50:649-659.
60. Coudert Y., et al. Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytol. 2015, 206:243-254.
61. Muthreich N., et al. Comparative transcriptome profiling of maize coleoptilar nodes during shoot-borne root initiation. Plant Physiol. 2013, 163:419-430.
62. Xu C., et al. Cooperative action of the paralogous maize LOB domain proteins RTCS and RTCL in shoot-borne root formation. New Phytol. 2015, 207:1123-1133.
63. Ariel F.D., et al. The LOB-like transcription factor Mt LBD1 controls Medicago truncatula root architecture under salt stress. Plant Signal. Behav. 2010, 5:1666-1668.
64. Ariel F., et al. Environmental regulation of lateral root emergence in Medicago truncatula requires the HD-Zip I transcription factor HB1. Plant Cell 2010, 22:2171-2183.
65. Gupta A., et al. Interaction between glucose and brassinosteroid during regulation of lateral root development in Arabidopsis thaliana. Plant Physiol. 2015, 168:307-320.