LBD29 regulates the cell cycle progression in response to auxin during lateral root formation in Arabidopsis thaliana

Annals of Botany

Volumn 110, Issue 1, 2012, Pages 1-10

  Feng, Zhenhua ^a   Sun, Xudong ^a   Wang, Guangchao ^a   Liu, Hailiang ^a   Zhu, Jian ^a  

^a TONGJI UNIVERSITY   (China)

Author keywords

Arabidopsis thaliana; auxin response; cell cycle; lateral root initiation; LBD29; pericycle

Indexed keywords

ARABIDOPSIS PROTEIN; INDOLEACETIC ACID DERIVATIVE;

CELL ORGANELLE; DEVELOPMENTAL BIOLOGY; GENE EXPRESSION; HERB; HORMONE; HYBRIDIZATION; MATURATION; MOLECULAR ANALYSIS; PHYSIOLOGICAL RESPONSE; POLYMERASE CHAIN REACTION; QUANTITATIVE ANALYSIS; ROOT; SPECIATION (BIOLOGY);

ARABIDOPSIS; ARTICLE; CELL CYCLE; DRUG EFFECT; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PLANT ROOT; TRANSGENIC PLANT;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL CYCLE; GENE EXPRESSION REGULATION, PLANT; INDOLEACETIC ACIDS; PLANT ROOTS; PLANTS, GENETICALLY MODIFIED;

ARABIDOPSIS THALIANA;

EID: 84862994340     PISSN: 03057364     EISSN: 10958290     Source Type: Journal    
DOI: 10.1093/aob/mcs019     Document Type: Article

References (61)

1. Aida M, Beis D, Heidstra R, et al. 2004. The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche. Cell 119: 109-120.
2. Atta R, Laurens L, Boucheron-Dubuisson E, et al. 2009. Pluripotency of Arabidopsis xylem pericycle underlies shoot regeneration from root and hypocotyl explants grown in vitro. The Plant Journal 57: 626-644.
3. von Behrens I, Komatsu M, Zhang Y, et al. 2011. Rootless with undetectable meristem 1 encodes a monocot-specific AUX/IAA protein that controls embryonic seminal and postembryonic lateral root initiation in maize. The Plant Journal 66: 341-353.
4. Benkova E, Michniewicz M, Sauer M, et al. 2003. Local, efflux-dependent auxin gradients as a common module for plant organ formation. Cell 115: 591-602. (Pubitemid 37506047)
5. Blilou I, Xu J, Wildwater M, et al. 2005. The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots. Nature 433: 39-44. (Pubitemid 40101136)
6. Borghi L, Bureau M, Simon R. 2007. Arabidopsis JAGGED LATERAL ORGANS is expressed in boundaries and coordinates KNOX and PIN activity. The Plant Cell 19: 1795-1808. (Pubitemid 47218841)
7. Bureau M, Rast MI, Illmer J, Simon R. 2010. JAGGED LATERAL ORGAN (JLO) controls auxin dependent patterning during development of the Arabidopsis embryo and root. Plant Molecular Biology 74: 479-491.
8. Casimiro I, Marchant A, Bhalerao RP, et al. 2001. Auxin transport promotes Arabidopsis lateral root initiation. The Plant Cell 13: 843-852. (Pubitemid 32375905)
9. Casimiro I, Beeckman T, Graham N, et al. 2003. Dissecting Arabidopsis lateral root development. Trends in Plant Science 8: 165-171. (Pubitemid 36726458)
10. Che P, Lall S, Nettleton D, Howell SH. 2006. Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture. Plant Physiology 141: 620-637. (Pubitemid 43974556)
11. De Rybel B, Vassileva V, Parizot B, et al. 2010. A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity. Current Biology 20: 1697-1706.
12. De Smet I, Vanneste S, Inze D, Beeckman T. 2006. Lateral root initiation or the birth of a new meristem. Plant Molecular Biology 60: 871-887. (Pubitemid 43794836)
13. De Smet I, Tetsumura T, De Rybel B, et al. 2007. Auxin-dependent regulation of lateral root positioning in the basal meristem of Arabidopsis. Development 134: 681-690. (Pubitemid 46437910)
14. De Smet I, Lau S, Voss U, et al. 2010. Bimodular auxin response controls or-ganogenesis in Arabidopsis. Proceedings of the National Academy of Sciences, USA 107: 2705-2710.
15. Dewitte W, Scofield S, Alcasabas AA, et al. 2007. Arabidopsis CYCD3 D-type cyclins link cell proliferation and endocycles and are rate-limiting for cytokinin responses. Proceedings of the National Academy of Sciences, USA 104: 14537-14542. (Pubitemid 350003296)
16. Dharmasiri N, Dharmasiri S, Estelle M. 2005. The F-box protein TIR1 is an auxin receptor. Nature 435: 441-445. (Pubitemid 40734235)
17. Dubrovsky JG, Rost TL, Colon-Carmona A, Doerner P. 2001. Early prim-ordium morphogenesis during lateral root initiation in Arabidopsis thaliana. Planta 214: 30-36. (Pubitemid 36064837)
18. Dubrovsky JG, Gambetta GA, Hernandez-Barrera A, Shishkova S, Gonzalez I. 2006. Lateral root initiation in Arabidopsis: developmental window, spatial patterning, density and predictability. Annals of Botany 97: 903-915.
19. Dubrovsky JG, Sauer M, Napsucialy-Mendivil S, et al. 2008. Auxin acts as a local morphogenetic trigger to specify lateral root founder cells. Proceedings of the National Academy of Sciences, USA 105: 8790-8794. (Pubitemid 351987758)
20. Dubrovsky JG, Soukup A, Napsucialy-Mendivil S, Jeknic Z, Ivanchenko MG. 2009. The lateral root initiation index: an integrative measure of primordium formation. Annals of Botany 103: 807-817.
21. Friml J, Vieten A, Sauer M, et al. 2003. Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature 426: 147-153. (Pubitemid 37442576)
22. Fukaki H, Tameda S, Masuda H, Tasaka M. 2002. Lateral root formation is blocked by a gain-of-function mutation in the SOLITARY-ROOT/IAA14 gene of Arabidopsis. The Plant Journal 29: 153-168. (Pubitemid 34134693)
23. Fukaki H, Okushima Y, Tasaka M. 2007. Auxin-mediated lateral root formation in higher plants. International Review of Cytology 256: 111-137. (Pubitemid 46111080)
24. Galinha C, Hofhuis H, Luijten M, et al. 2007. PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development. Nature 449: 1053-1057. (Pubitemid 350014594)
25. Gou J, Strauss SH, Tsai CJ, et al. 2010. Gibberellins regulate lateral root formation in Populus through interactions with auxin and other hormones. The Plant Cell 22: 623-639.
26. Healy JM, Menges M, Doonan JH, Murray JA. 2001. The Arabidopsis D-type cyclins CycD2 and CycD3 both interact in vivo with the PSTAIRE cyclin-dependent kinase Cdc2a but are differentially controlled. Journal of Biological Chemistry 276: 7041-7047.
27. Himanen K, Boucheron E, Vanneste S, de Almeida EJ, Inze D, Beeckman T. 2002. Auxin-mediated cell cycle activation during early lateral root initiation. The Plant Cell 14: 2339-2351. (Pubitemid 35224836)
28. Himanen K, Vuylsteke M, Vanneste S, et al. 2004. Transcript profiling of early lateral root initiation. Proceedings of the National Academy of Sciences, USA 101: 5146-5151. (Pubitemid 38469216)
29. Inukai Y, Sakamoto T, Ueguchi-Tanaka M, et al. 2005. Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling. The Plant Cell 17: 1387-1396. (Pubitemid 43138192)
30. Ivanchenko MG, Coffeen WC, Lomax TL, Dubrovsky JG. 2006. Mutations in the Diageotropica (Dgt) gene uncouple patterned cell division during lateral root initiation from proliferative cell division in the pericycle. The Plant Journal 46: 436-447.
31. Iwakawa H, Ueno Y, Semiarti E, et al. 2002. The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant and Cell Physiology 43: 467-478. (Pubitemid 34604593)
32. Krizek BA. 2011. Auxin regulation of Arabidopsis flower development involves members of the AINTEGUMENTA-LIKE/PLETHORA (AIL/PLT) family. Journal of Experimental Botany 62: 3311-3319.
33. Laplaze L, Benkova E, Casimiro I, et al. 2007. Cytokinins act directly on lateral root founder cells to inhibit root initiation. The Plant Cell 19: 3889-3900. (Pubitemid 351265307)
34. Laskowski MJ, Williams ME, Nusbaum HC, Sussex IM. 1995. Formation of lateral root meristems is a two-stage process. Development 121: 3303-3310.
35. Laskowski M, Grieneisen VA, Hofhuis H, et al. 2008. Root system architecture from coupling cell shape to auxin transport. PLoS Biology 6: e307. http://dx.doi.org/10.1371/journal.pbio.0060307.
36. Lee HW, Kim J. 2010. Ectopic expression of LBD18/ASL20 results in arrest of plant growth and development with repression of AINTEGUMENTA and PLETHORA genes. Journal of Plant Biology 53: 214-221.
37. Lee HW, Kim NY, Lee DJ, Kim J. 2009. LBD18/ASL20 regulates lateral root formation in combination with LBD16/ASL18 downstream of ARF7 and ARF19 in Arabidopsis. Plant Physiology 151: 1377-1389.
38. Liu H, Wang S, Yu X, et al. 2005. ARL1, a LOB-domain protein required for adventitious root formation in rice. The Plant Journal 43: 47-56. (Pubitemid 40962734)
39. Liu HL, Wang GC, Feng ZH, Zhu JA. 2010. Screening of genes associated with dedifferentiation and effect of LBD29 on pericycle cells in Arabidopsis thaliana. Plant Growth Regulation 62: 127-136.
40. Ludevid D, Hofte H, Himelblau E, Chrispeels MJ. 1992. The expression pattern of the tonoplast intrinsic protein gamma-TIP in Arabidopsis thaliana is correlated with cell enlargement. Plant Physiology 100: 1633-1639.
41. Malamy JE, Benfey PN. 1997. Organization and cell differentiation in lateral roots of Arabidopsis thaliana. Development 124: 33-44. (Pubitemid 27053004)
42. Mangeon A, Bell EM, Lin WC, Jablonska B, Springer PS. 2011. Misregulation of the LOB domain gene DDA1 suggests possible functions in auxin signalling and photomorphogenesis. Journal of Experimental Botany 62: 221-233.
43. Masubelele NH, Dewitte W, Menges M, et al. 2005. D-type cyclins activate division in the root apex to promote seed germination in Arabidopsis. Proceedings of the National Academy of Sciences, USA 102: 15694-15699. (Pubitemid 41528118)
44. Menges M, Samland AK, Planchais S, Murray JA. 2006. The D-type cyclin CYCD3;1 is limiting for the G1-to-S-phase transition in Arabidopsis. The Plant Cell 18: 893-906. (Pubitemid 43956143)
45. Naito T, Yamashino T, Kiba T, et al. 2007. A link between cytokinin and ASL9 (ASYMMETRIC LEAVES 2 LIKE 9) that belongs to the AS2/LOB (LATERAL ORGAN BOUNDARIES) family genes in Arabidopsis thaliana. Bioscience, Biotechnology, and Biochemistry 71: 1269-1278. (Pubitemid 47164238)
46. Nemhauser JL, Mockler TC, Chory J. 2004. Interdependency of brassinos-teroid and auxin signaling in Arabidopsis. PLoS Biology 2: e258. http://dx. doi:10.1371/journal.pbio.0020258.
47. Nieuwland J, Maughan S, Dewitte W, Scofield S, Sanz L, Murray JA. 2009. The D-type cyclin CYCD4;1 modulates lateral root density in Arabidopsis by affecting the basal meristem region. Proceedings of the National Academy of Sciences, USA 106: 22528-22533.
48. Okushima Y, Overvoorde PJ, Arima K, et al. 2005. Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19. The Plant Cell 17: 444-463. (Pubitemid 41672967)
49. Okushima Y, Fukaki H, Onoda M, Theologis A, Tasaka M. 2007. ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis. The Plant Cell 19: 118-130. (Pubitemid 46852706)
50. Overvoorde P, Fukaki H, Beeckman T. 2010. Auxin control of root development. Cold Spring Harbor Perspectives in Biology 2: a001537. http://dx.doi.org/10.1101/cshperspect.a001537.
51. Paponov IA, Paponov M, Teale W, et al. 2008. Comprehensive transcriptome analysis of auxin responses in Arabidopsis. Molecular Plant 1: 321-337.
52. Parizot B, Laplaze L, Ricaud L, et al. 2008. Diarch symmetry of the vascular bundle in Arabidopsis root encompasses the pericycle and is reflected in distich lateral root initiation. Plant Physiology 146: 140-148. (Pubitemid 351380044)
53. Sanz L, Dewitte W, Forzani C, et al. 2011. The Arabidopsis D-type cyclin CYCD2;1 and the inhibitor ICK2/KRP2 modulate auxin-induced lateral root formation. The Plant Cell 23: 641-660.
54. Sauer M, Balla J, Luschnig C, et al. 2006. Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity. Genes and Development 20: 2902-2911. (Pubitemid 44771750)
55. Shuai B, Reynaga-Pena CG, Springer PS. 2002. The lateral organ boundaries gene defines a novel, plant-specific gene family. Plant Physiology 129: 747-761. (Pubitemid 34695944)
56. Swarup K, Benkova E, Swarup R, et al. 2008. The auxin influx carrier LAX3 promotes lateral root emergence. Nature Cell Biology 10: 946-954.
57. Vanneste S, De Rybel B, Beemster GT, et al. 2005. Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thaliana. The Plant Cell 17: 3035-3050.
58. Weijers D, Benkova E, Jager KE, et al. 2005. Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators. EMBO Journal 24: 1874-1885. (Pubitemid 40769506)
59. Wilmoth JC, Wang S, Tiwari SB, et al. 2005. NPH4/ARF7 and ARF19 promote leaf expansion and auxin-induced lateral root formation. The Plant Journal 43: 118-30. (Pubitemid 40962740)
60. Ulmasov T, Murfett J, Hagen G, Guilfoyle TJ. 1997. Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. Plant Cell 9: 1963-1971. (Pubitemid 28174069)
61. Xie Z, Lee E, Lucas JR, et al. 2010. Regulation of cell proliferation in the stomatal lineage by the Arabidopsis MYB FOUR LIPS via direct targeting of core cell cycle genes. The Plant Cell 22: 2306-2321.