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Volumn 53, Issue 4, 2016, Pages 1148-1157

Quantifying relative fish abundance with eDNA: a promising tool for fisheries management

Author keywords

conservation genetics; gillnetting; monitoring; quantitative PCR; salmonid; species specific detection; water sampling

Indexed keywords

ABUNDANCE; BIOMASS; CATCH PER UNIT EFFORT; CONSERVATION GENETICS; DISSOLVED OXYGEN; DNA; FISHERY MANAGEMENT; GILLNET; POLYMERASE CHAIN REACTION; SALMONID; SAMPLING; SPATIAL VARIATION; STRATIFICATION;

EID: 84957837907     PISSN: 00218901     EISSN: 13652664     Source Type: Journal    
DOI: 10.1111/1365-2664.12598     Document Type: Article
Times cited : (243)

References (55)
  • 4
    • 84863997760 scopus 로고    scopus 로고
    • Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrog Lithobates catesbeianus
    • Dejean, T., Valentini, A., Miquel, C., Taberlet, P., Bellemain, E. & Miaud, C. (2012) Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrog Lithobates catesbeianus. Journal of Applied Ecology, 49, 953–959.
    • (2012) Journal of Applied Ecology , vol.49 , pp. 953-959
    • Dejean, T.1    Valentini, A.2    Miquel, C.3    Taberlet, P.4    Bellemain, E.5    Miaud, C.6
  • 5
    • 84905097081 scopus 로고    scopus 로고
    • History, applications, methodological issues and perspectives for the use of environmental DNA (eDNA) in marine and freshwater environments
    • Díaz-Ferguson, E.E. & Moyer, G.R. (2014) History, applications, methodological issues and perspectives for the use of environmental DNA (eDNA) in marine and freshwater environments. Revista de Biología Tropical, 62, 1273–1284.
    • (2014) Revista de Biología Tropical , vol.62 , pp. 1273-1284
    • Díaz-Ferguson, E.E.1    Moyer, G.R.2
  • 7
    • 33748325739 scopus 로고    scopus 로고
    • Routes to improving the reliability of low level DNA analysis using real-time PCR
    • Ellison, S.L.R., English, C.A., Burns, M.J. & Keer, J.T. (2006) Routes to improving the reliability of low level DNA analysis using real-time PCR. BMC Biotechnology, 6, 33.
    • (2006) BMC Biotechnology , vol.6 , pp. 33
    • Ellison, S.L.R.1    English, C.A.2    Burns, M.J.3    Keer, J.T.4
  • 8
    • 34248181889 scopus 로고    scopus 로고
    • Effects of hypoxia on scope-for-activity and power capacity of lake trout (Salvelinus namaycush)
    • Evans, D.O. (2007) Effects of hypoxia on scope-for-activity and power capacity of lake trout (Salvelinus namaycush). Canadian Journal of Fisheries and Aquatic Science, 64, 345–361.
    • (2007) Canadian Journal of Fisheries and Aquatic Science , vol.64 , pp. 345-361
    • Evans, D.O.1
  • 9
    • 46949088285 scopus 로고    scopus 로고
    • Species detection using environmental DNA from water samples
    • Ficetola, G.F., Miaud, C., Pompanon, F. & Taberlet, P. (2008) Species detection using environmental DNA from water samples. Biology Letters, 4, 423–425.
    • (2008) Biology Letters , vol.4 , pp. 423-425
    • Ficetola, G.F.1    Miaud, C.2    Pompanon, F.3    Taberlet, P.4
  • 10
    • 79960795565 scopus 로고    scopus 로고
    • Molecular detection of vertebrates in stream water: a demonstration using rocky mountain tailed frogs and idaho giant salamanders
    • Goldberg, C.S., Pilliod, D.S., Arkle, R.S. & Waits, L.P. (2011) Molecular detection of vertebrates in stream water: a demonstration using rocky mountain tailed frogs and idaho giant salamanders. PLoS ONE, 6, e22746.
    • (2011) PLoS ONE , vol.6
    • Goldberg, C.S.1    Pilliod, D.S.2    Arkle, R.S.3    Waits, L.P.4
  • 11
    • 84884303881 scopus 로고    scopus 로고
    • Environmental DNA as a new method for early detection of New Zealand mudsnails (Potamopyrgus antipodarum)
    • Goldberg, C.S., Sepulveda, A., Ray, A., Baumgardt, J. & Waits, L.P. (2013) Environmental DNA as a new method for early detection of New Zealand mudsnails (Potamopyrgus antipodarum). Freshwater Science, 32, 792–800.
    • (2013) Freshwater Science , vol.32 , pp. 792-800
    • Goldberg, C.S.1    Sepulveda, A.2    Ray, A.3    Baumgardt, J.4    Waits, L.P.5
  • 12
    • 75749098365 scopus 로고    scopus 로고
    • Ancient DNA reveals late survival of mammoth and horse in interior Alaska
    • Haile, J., Froese, D.G., MacPhee, R.D.E., Roberts, R.G., Arnold, L.J., Reyes, A.V. et al. (2009) Ancient DNA reveals late survival of mammoth and horse in interior Alaska. PNAS, 106, 22352–22357.
    • (2009) PNAS , vol.106 , pp. 22352-22357
    • Haile, J.1    Froese, D.G.2    MacPhee, R.D.E.3    Roberts, R.G.4    Arnold, L.J.5    Reyes, A.V.6
  • 13
    • 79952744541 scopus 로고    scopus 로고
    • Relative abundance and catch per unit effort
    • (eds, C.S. Guy, M.L. Brown, American Fisheries Society, Bethesda, MA
    • Hubert, W.A. & Fabrizio, M.C. (2007) Relative abundance and catch per unit effort. Analysis and Interpretation of Freshwater Fisheries Data (eds C.S. Guy & M.L. Brown), pp. 279–325. American Fisheries Society, Bethesda, MA.
    • (2007) Analysis and Interpretation of Freshwater Fisheries Data , pp. 279-325
    • Hubert, W.A.1    Fabrizio, M.C.2
  • 15
    • 79951983346 scopus 로고    scopus 로고
    • Sight-unseen” detection of rare aquatic species using environmental DNA
    • Jerde, C.L., Mahon, A.R., Chadderton, W.L. & Lodge, D.M. (2011) “Sight-unseen” detection of rare aquatic species using environmental DNA. Conservation Letters, 4, 150–157.
    • (2011) Conservation Letters , vol.4 , pp. 150-157
    • Jerde, C.L.1    Mahon, A.R.2    Chadderton, W.L.3    Lodge, D.M.4
  • 18
    • 84898618580 scopus 로고    scopus 로고
    • Using environmental DNA to census marine fishes in a large mesocosm
    • Kelly, R.P., Port, J.A., Yamahara, K.M. & Crowder, L.B. (2014) Using environmental DNA to census marine fishes in a large mesocosm. PLoS ONE, 9, e86175.
    • (2014) PLoS ONE , vol.9
    • Kelly, R.P.1    Port, J.A.2    Yamahara, K.M.3    Crowder, L.B.4
  • 19
    • 84921917001 scopus 로고    scopus 로고
    • Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix
    • Klymus, K.E., Richter, C.A., Chapman, D.C. & Paukert, C. (2015) Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix. Biological Conservation, 183, 77–84.
    • (2015) Biological Conservation , vol.183 , pp. 77-84
    • Klymus, K.E.1    Richter, C.A.2    Chapman, D.C.3    Paukert, C.4
  • 21
    • 0004170691 scopus 로고    scopus 로고
    • 2nd edn, Developments in Environmental Modelling 20., Elsevier, New York
    • Legendre, P. & Legendre, L. (1998) Numerical Ecology, 2nd edn, Developments in Environmental Modelling 20. Elsevier, New York.
    • (1998) Numerical Ecology
    • Legendre, P.1    Legendre, L.2
  • 22
    • 84911897989 scopus 로고    scopus 로고
    • Coldwater fish in small standing waters
    • (eds, S.A. Bonar, W.A. Hubert, D.W. Willis, American Fisheries Society, Bethesda, MA
    • Lester, N., Bailey, P.E. & Hubert, W.A. (2009) Coldwater fish in small standing waters. Standard Methods for Sampling North American Freshwater Fishes (eds S.A. Bonar, W.A. Hubert & D.W. Willis), pp. 85–96. American Fisheries Society, Bethesda, MA.
    • (2009) Standard Methods for Sampling North American Freshwater Fishes , pp. 85-96
    • Lester, N.1    Bailey, P.E.2    Hubert, W.A.3
  • 25
    • 84908601386 scopus 로고    scopus 로고
    • Utility of environmental DNA for monitoring rare and indicator macroinvertebrate species
    • Mächler, E., Deiner, K., Steinmann, P. & Altermatt, F. (2014) Utility of environmental DNA for monitoring rare and indicator macroinvertebrate species. Freshwater Science, 33, 1174–1183.
    • (2014) Freshwater Science , vol.33 , pp. 1174-1183
    • Mächler, E.1    Deiner, K.2    Steinmann, P.3    Altermatt, F.4
  • 27
    • 0002916945 scopus 로고
    • The lake charr: Salvelinus namaycush
    • (ed., E.K. Balon, Dr. W. Junk bv Publishers, The Hague, the Netherlands
    • Martin, N.V. & Olver, C.H. (1980) The lake charr: Salvelinus namaycush. Charrs: Salmonid Fishes of the Genus Salvelinus (ed. E.K. Balon), pp. 205–277. Dr. W. Junk bv Publishers, The Hague, the Netherlands.
    • (1980) Charrs: Salmonid Fishes of the Genus Salvelinus , pp. 205-277
    • Martin, N.V.1    Olver, C.H.2
  • 29
    • 75449108345 scopus 로고    scopus 로고
    • Life history differences parallel environmental differences among North American lake trout (Salvelinus namaycush) populations
    • McDermid, J.L., Shuter, B.J. & Lester, N.P. (2010) Life history differences parallel environmental differences among North American lake trout (Salvelinus namaycush) populations. Canadian Journal of Fisheries and Aquatic Science, 67, 314–325.
    • (2010) Canadian Journal of Fisheries and Aquatic Science , vol.67 , pp. 314-325
    • McDermid, J.L.1    Shuter, B.J.2    Lester, N.P.3
  • 30
    • 84978360324 scopus 로고    scopus 로고
    • Ministère des Ressources Naturelles et de la Faune, Secteur Faune Québec, Direction de l'expertise sur la faune et ses habitats, Service de la faune aquatique, Québec. 33
    • Ministère des Ressources naturelles et de la faune (MRNF) (2011) Inventaire ichtyologique provincial du touladi (Salvelinus namaycush). Ministère des Ressources Naturelles et de la Faune, Secteur Faune Québec, Direction de l'expertise sur la faune et ses habitats, Service de la faune aquatique, Québec. pp. 33.
    • (2011) Inventaire ichtyologique provincial du touladi (Salvelinus namaycush)
  • 31
    • 84894266433 scopus 로고    scopus 로고
    • Detecting an elusive invasive species: a diagnostic PCR to detect Burmese python in Florida waters and an assessment of persistence of environmental DNA
    • Piaggio, A.J., Engeman, R.M., Hopken, M.W., Humphrey, J.S., Keacher, K.L., Bruce, W.E. & Avery, M.L. (2014) Detecting an elusive invasive species: a diagnostic PCR to detect Burmese python in Florida waters and an assessment of persistence of environmental DNA. Molecular Ecology Resources, 14, 374–380.
    • (2014) Molecular Ecology Resources , vol.14 , pp. 374-380
    • Piaggio, A.J.1    Engeman, R.M.2    Hopken, M.W.3    Humphrey, J.S.4    Keacher, K.L.5    Bruce, W.E.6    Avery, M.L.7
  • 32
    • 84880934164 scopus 로고    scopus 로고
    • Estimating occupancy and abundance of stream amphibians using environmental DNA from filtered water samples
    • Pilliod, D.S., Goldberg, C.S., Arkle, R.S. & Waits, L.P. (2013a) Estimating occupancy and abundance of stream amphibians using environmental DNA from filtered water samples. Canadian Journal of Fisheries and Aquatic Science, 70, 1123–1130.
    • (2013) Canadian Journal of Fisheries and Aquatic Science , vol.70 , pp. 1123-1130
    • Pilliod, D.S.1    Goldberg, C.S.2    Arkle, R.S.3    Waits, L.P.4
  • 34
    • 70350540227 scopus 로고    scopus 로고
    • Performance of temperature and dissolved oxygen criteria to predict habitat use by lake trout (Salvelinus namaycush)
    • Plumb, J.M. & Blanchfield, P.J. (2009) Performance of temperature and dissolved oxygen criteria to predict habitat use by lake trout (Salvelinus namaycush). Canadian Journal of Fisheries and Aquatic Science, 11, 2011–2023.
    • (2009) Canadian Journal of Fisheries and Aquatic Science , vol.11 , pp. 2011-2023
    • Plumb, J.M.1    Blanchfield, P.J.2
  • 35
    • 84902786380 scopus 로고    scopus 로고
    • Methods for assessing fish populations
    • 3rd edn, (eds, W.A. Hubert, M.C. Quist, American Fisheries Society, Bethesda, MA
    • Pope, K.L., Lochmann, S.E. & Young, M.K. (2010) Methods for assessing fish populations. Inland Fisheries Management in North America, 3rd edn (eds W.A. Hubert & M.C. Quist), pp. 325–352. American Fisheries Society, Bethesda, MA.
    • (2010) Inland Fisheries Management in North America , pp. 325-352
    • Pope, K.L.1    Lochmann, S.E.2    Young, M.K.3
  • 37
    • 84925340061 scopus 로고    scopus 로고
    • The detection of aquatic animal species using environmental DNA – a review of eDNA as a survey tool in ecology
    • Rees, H.C., Maddison, B.C., Middleditch, D.J., Patmore, J.R.M. & Gough, K.C. (2014) The detection of aquatic animal species using environmental DNA – a review of eDNA as a survey tool in ecology. Journal of Applied Ecology, 51, 1450–1459.
    • (2014) Journal of Applied Ecology , vol.51 , pp. 1450-1459
    • Rees, H.C.1    Maddison, B.C.2    Middleditch, D.J.3    Patmore, J.R.M.4    Gough, K.C.5
  • 38
    • 84923079413 scopus 로고    scopus 로고
    • The room temperature preservation of filtered environmental DNA samples and assimilation into a phenol–chloroform–isoamyl alcohol DNA extraction
    • Renshaw, M.A., Olds, B.P., Jerde, C.L., McVeigh, M.M. & Lodge, D.M. (2014) The room temperature preservation of filtered environmental DNA samples and assimilation into a phenol–chloroform–isoamyl alcohol DNA extraction. Molecular Ecology Resources, 15, 168–176.
    • (2014) Molecular Ecology Resources , vol.15 , pp. 168-176
    • Renshaw, M.A.1    Olds, B.P.2    Jerde, C.L.3    McVeigh, M.M.4    Lodge, D.M.5
  • 43
    • 43649097718 scopus 로고    scopus 로고
    • Engineered polymerases amplify the potential of ancient DNA
    • Shapiro, B. (2008) Engineered polymerases amplify the potential of ancient DNA. Trends in Biotechnology, 26, 285–287.
    • (2008) Trends in Biotechnology , vol.26 , pp. 285-287
    • Shapiro, B.1
  • 45
    • 84921934773 scopus 로고    scopus 로고
    • Quantifying effects of UV-B, temperature, and pH on eDNA degradation in aquatic microcosms
    • Strickler, K.M., Fremier, A.K. & Goldberg, C.S. (2015) Quantifying effects of UV-B, temperature, and pH on eDNA degradation in aquatic microcosms. Biological Conservation, 183, 85–92.
    • (2015) Biological Conservation , vol.183 , pp. 85-92
    • Strickler, K.M.1    Fremier, A.K.2    Goldberg, C.S.3
  • 50
    • 85027917593 scopus 로고    scopus 로고
    • Fish environmental DNA is more concentrated in aquatic sediments than surface water
    • Turner, C.R., Uy, L.K. & Everhart, R.C. (2015) Fish environmental DNA is more concentrated in aquatic sediments than surface water. Biological Conservation, 183, 93–102.
    • (2015) Biological Conservation , vol.183 , pp. 93-102
    • Turner, C.R.1    Uy, L.K.2    Everhart, R.C.3
  • 52
    • 11444257137 scopus 로고    scopus 로고
    • American Fisheries Society, Bethesda, MA
    • Use of Fishes in Research Committee (UFC) (2014) Guidelines for the Use of Fishes in Research. pp. 80. American Fisheries Society, Bethesda, MA.
    • (2014) Guidelines for the Use of Fishes in Research , pp. 80
  • 54
    • 33748316449 scopus 로고    scopus 로고
    • Degradation of plasmid and plant DNA in water microcosms monitored by natural transformation and real-time polymerase chain reaction (PCR)
    • Zhu, B. (2006) Degradation of plasmid and plant DNA in water microcosms monitored by natural transformation and real-time polymerase chain reaction (PCR). Water Research, 40, 3231–3238.
    • (2006) Water Research , vol.40 , pp. 3231-3238
    • Zhu, B.1


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