-
1
-
-
70350482660
-
Roles of viruses in the environment
-
Rohwer F, Prangishvili D, Lindell D. 2009. Roles of viruses in the environment. Environ Microbiol 11:2771-2774. http://dx.doi.org/10.1111/j.1462-2920.2009.02101.x.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2771-2774
-
-
Rohwer, F.1
Prangishvili, D.2
Lindell, D.3
-
2
-
-
25144506135
-
Viruses in the sea
-
Suttle CA. 2005. Viruses in the sea. Nature 437:356-361. http://dx.doi.org/10.1038/nature04160.
-
(2005)
Nature
, vol.437
, pp. 356-361
-
-
Suttle, C.A.1
-
3
-
-
0842266354
-
Are viruses driving microbial diversification and diversity?
-
Weinbauer MG, Rassoulzadegan F. 2004. Are viruses driving microbial diversification and diversity? Environ Microbiol 6:1-11.
-
(2004)
Environ Microbiol
, vol.6
, pp. 1-11
-
-
Weinbauer, M.G.1
Rassoulzadegan, F.2
-
4
-
-
23944506044
-
Mobile genetic elements: the agents of open source evolution
-
Frost LS, Leplae R, Summers AO, Toussaint A. 2005. Mobile genetic elements: the agents of open source evolution. Nat Rev Microbiol 3:722-732 http://dx.doi.org/10.1038/nrmicro1235.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 722-732
-
-
Frost, L.S.1
Leplae, R.2
Summers, A.O.3
Toussaint, A.4
-
5
-
-
84907502805
-
What ecologists can tell virologists
-
Dennehy JJ. 2014. What ecologists can tell virologists. Annu Rev Microbiol 68:17-135. http://dx.doi.org/10.1146/annurev-micro-091313-103436.
-
(2014)
Annu Rev Microbiol
, vol.68
, pp. 17-135
-
-
Dennehy, J.J.1
-
6
-
-
0033542481
-
Marine viruses and their biogeochemical and ecological effects
-
Fuhrman JA. 1999. Marine viruses and their biogeochemical and ecological effects. Nature 399:541-548. http://dx.doi.org/10.1038/21119.
-
(1999)
Nature
, vol.399
, pp. 541-548
-
-
Fuhrman, J.A.1
-
7
-
-
0034053843
-
Virioplankton: viruses in aquatic ecosystems
-
Wommack KE, Colwell RR. 2000. Virioplankton: viruses in aquatic ecosystems. Microbiol Mol Biol Rev 64:69-114. http://dx.doi.org/10.1128/MMBR.64.1.69-114.2000.
-
(2000)
Microbiol Mol Biol Rev
, vol.64
, pp. 69-114
-
-
Wommack, K.E.1
Colwell, R.R.2
-
9
-
-
31544466506
-
Tangential flow diafiltration: an improved technique for estimation of virioplankton production
-
Winget DM, Williamson KE, Helton RR, Wommack KE. 2005. Tangential flow diafiltration: an improved technique for estimation of virioplankton production. Aquat Microb Ecol 41:221-232. http://dx.doi.org/10.3354/ame041221.
-
(2005)
Aquat Microb Ecol
, vol.41
, pp. 221-232
-
-
Winget, D.M.1
Williamson, K.E.2
Helton, R.R.3
Wommack, K.E.4
-
10
-
-
34548792911
-
Marine viruses-major players in the global ecosystem
-
Suttle CA. 2007. Marine viruses-major players in the global ecosystem. Nat Rev Microbiol 5:801-812. http://dx.doi.org/10.1038/nrmicro1750.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 801-812
-
-
Suttle, C.A.1
-
11
-
-
70350180460
-
Explaining microbial population genomics through phage predation
-
Rodriguez-Valera F, Martin-Cuadrado AB, Rodriguez-Brito B, Pasić L, Thingstad TF, Rohwer F, Mira A. 2009. Explaining microbial population genomics through phage predation. Nat Rev Microbiol 7:828-836. http://dx.doi.org/10.1038/nrmicro2235.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 828-836
-
-
Rodriguez-Valera, F.1
Martin-Cuadrado, A.B.2
Rodriguez-Brito, B.3
Pasić, L.4
Thingstad, T.F.5
Rohwer, F.6
Mira, A.7
-
12
-
-
83655191021
-
Marine viruses: truth or dare
-
Breitbart M. 2012. Marine viruses: truth or dare. Ann Rev Mar Sci 4:425-448 http://dx.doi.org/10.1146/annurev-marine-120709-142805.
-
(2012)
Ann Rev Mar Sci
, vol.4
, pp. 425-448
-
-
Breitbart, M.1
-
13
-
-
38049026176
-
Ecology of viruses in soils: past, present and future perspectives
-
Kimura M, Jia ZJ, Nakayama N, Asakawa S. 2008. Ecology of viruses in soils: past, present and future perspectives. Soil Sci Plant Nutr 54:1-32. http://dx.doi.org/10.1111/j.1747-0765.2007.00197.x.
-
(2008)
Soil Sci Plant Nutr
, vol.54
, pp. 1-32
-
-
Kimura, M.1
Jia, Z.J.2
Nakayama, N.3
Asakawa, S.4
-
14
-
-
49149119258
-
Phages across the biosphere: contrasts of viruses in soil and aquatic environments
-
Srinivasiah S, Bhavsar J, Thapar K, Liles M, Schoenfeld T, Wommack KE. 2008. Phages across the biosphere: contrasts of viruses in soil and aquatic environments. Res Microbiol 159:349-357. http://dx.doi.org/10.1016/j.resmic.2008.04.010.
-
(2008)
Res Microbiol
, vol.159
, pp. 349-357
-
-
Srinivasiah, S.1
Bhavsar, J.2
Thapar, K.3
Liles, M.4
Schoenfeld, T.5
Wommack, K.E.6
-
15
-
-
0037224865
-
Elevated abundance of bacteriophage infecting bacteria in soil
-
Ashelford KE, Day MJ, Fry JC. 2003. Elevated abundance of bacteriophage infecting bacteria in soil. Appl Environ Microbiol 69:285-289. http://dx.doi.org/10.1128/AEM.69.1.285-289.2003.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 285-289
-
-
Ashelford, K.E.1
Day, M.J.2
Fry, J.C.3
-
16
-
-
20444395757
-
Abundance and diversity of viruses in six Delaware soils
-
Williamson KE, Radosevich M, Wommack KE. 2005. Abundance and diversity of viruses in six Delaware soils. Appl Environ Microbiol 71: 3119-3125. http://dx.doi.org/10.1128/AEM.71.6.3119-3125.2005.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 3119-3125
-
-
Williamson, K.E.1
Radosevich, M.2
Wommack, K.E.3
-
17
-
-
34548454912
-
Incidence of lysogeny within temperate and extreme soil environments
-
Williamson KE, Radosevich M, Smith DW, Wommack KE. 2007. Incidence of lysogeny within temperate and extreme soil environments. Environ Microbiol 9:2563-2574. http://dx.doi.org/10.1111/j.1462-2920.2007.01374.x.
-
(2007)
Environ Microbiol
, vol.9
, pp. 2563-2574
-
-
Williamson, K.E.1
Radosevich, M.2
Smith, D.W.3
Wommack, K.E.4
-
18
-
-
0025224451
-
Biological feedbacks in global desertification
-
Schlesinger WH, Reynolds JF, Cunningham GL, Huenneke LF, Jarrell WM, Virginia RA, Whitford WG. 1990. Biological feedbacks in global desertification. Science 247:1043-1048. http://dx.doi.org/10.1126/science.247.4946.1043.
-
(1990)
Science
, vol.247
, pp. 1043-1048
-
-
Schlesinger, W.H.1
Reynolds, J.F.2
Cunningham, G.L.3
Huenneke, L.F.4
Jarrell, W.M.5
Virginia, R.A.6
Whitford, W.G.7
-
19
-
-
1342288361
-
Spatial habitat heterogeneity influences competition and coexistence in an African acacia ant guild
-
Palmer TM. 2003. Spatial habitat heterogeneity influences competition and coexistence in an African acacia ant guild. Ecology 84:2843-2855. http://dx.doi.org/10.1890/02-0528.
-
(2003)
Ecology
, vol.84
, pp. 2843-2855
-
-
Palmer, T.M.1
-
20
-
-
6044278346
-
Water pulses and biogeochemical cycles in arid and semiarid ecosystems
-
Austin AT, Yahdjian L, Stark JM, Belnap J, Porporato A, Norton U, Ravetta DA, Schaeffer SM. 2004. Water pulses and biogeochemical cycles in arid and semiarid ecosystems. Oecologia 141:221-235. http://dx.doi.org/10.1007/s00442-004-1519-1.
-
(2004)
Oecologia
, vol.141
, pp. 221-235
-
-
Austin, A.T.1
Yahdjian, L.2
Stark, J.M.3
Belnap, J.4
Porporato, A.5
Norton, U.6
Ravetta, D.A.7
Schaeffer, S.M.8
-
21
-
-
58949098580
-
UV-B-induced oxidative damage and protective role of exopolysaccharides in desert cyanobacterium Microcoleus vaginatus
-
Chen LZ, Wang GH, Hong S, Liu A, Li C, Liu YD. 2009. UV-B-induced oxidative damage and protective role of exopolysaccharides in desert cyanobacterium Microcoleus vaginatus. J Integr Plant Biol 51:194-200. http://dx.doi.org/10.1111/j.1744-7909.2008.00784.x.
-
(2009)
J Integr Plant Biol
, vol.51
, pp. 194-200
-
-
Chen, L.Z.1
Wang, G.H.2
Hong, S.3
Liu, A.4
Li, C.5
Liu, Y.D.6
-
22
-
-
0003022494
-
Arid and semiarid climatic types of the world
-
International Geographical Union, Washington, DC
-
Meigs P. 1952. Arid and semiarid climatic types of the world, p 135-138. In Proceedings of the VIII General Assembly and XVII International Congress. International Geographical Union, Washington, DC.
-
(1952)
Proceedings of the VIII General Assembly and XVII International Congress
, pp. 135-138
-
-
Meigs, P.1
-
23
-
-
84957631560
-
-
Routledge, London, United Kingdom
-
United Nations Environmental Programme (UNEP). 2013. Global environment outlook 2000. Routledge, London, United Kingdom.
-
(2013)
Global environment outlook 2000
-
-
-
24
-
-
0022181546
-
Biological determinants of species diversity
-
Shmida A, Wilson M. 1985. Biological determinants of species diversity. J Biogeogr 12:1-20. http://dx.doi.org/10.2307/2845026.
-
(1985)
J Biogeogr
, vol.12
, pp. 1-20
-
-
Shmida, A.1
Wilson, M.2
-
25
-
-
15944423792
-
Activation of photosynthesis and resistance to photoinhibition in cyanobacteria within biological desert crust
-
Harel Y, Ohad I, Kaplan A. 2004. Activation of photosynthesis and resistance to photoinhibition in cyanobacteria within biological desert crust. Plant Physiol 136:3070-3079. http://dx.doi.org/10.1104/pp.104.047712.
-
(2004)
Plant Physiol
, vol.136
, pp. 3070-3079
-
-
Harel, Y.1
Ohad, I.2
Kaplan, A.3
-
26
-
-
73949130743
-
Highly specialized microbial diversity in hyper-arid polar desert
-
Pointing SB, Chan Y, Lacap DC, Lau MCY, Jurgens JA, Farrell RL. 2009 Highly specialized microbial diversity in hyper-arid polar desert. Proc Natl Acad Sci U S A 106:19964-19969. http://dx.doi.org/10.1073/pnas.0908274106.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 19964-19969
-
-
Pointing, S.B.1
Chan, Y.2
Lacap, D.C.3
Lau, M.C.Y.4
Jurgens, J.A.5
Farrell, R.L.6
-
27
-
-
77953929484
-
Microclimate and limits to photosynthesis in a diverse community of hypolithic cyanobacteria in northern Australia
-
Tracy CR, Streten-Joyce C, Dalton R, Nussear KE, Gibb KS, Christian KA. 2010. Microclimate and limits to photosynthesis in a diverse community of hypolithic cyanobacteria in northern Australia. Environ Microbiol 12:592-607. http://dx.doi.org/10.1111/j.1462-2920.2009.02098.x.
-
(2010)
Environ Microbiol
, vol.12
, pp. 592-607
-
-
Tracy, C.R.1
Streten-Joyce, C.2
Dalton, R.3
Nussear, K.E.4
Gibb, K.S.5
Christian, K.A.6
-
28
-
-
79551680486
-
Distribution and abiotic influences on hypolithic microbial communities in an Antarctic dry valley
-
Cowan DA, Pointing SB, Stevens MI, Craig Cary S, Stomeo F, Tuffin IM. 2011. Distribution and abiotic influences on hypolithic microbial communities in an Antarctic dry valley. Polar Biol 34:307-311. http://dx.doi.org/10.1007/s00300-010-0872-2.
-
(2011)
Polar Biol
, vol.34
, pp. 307-311
-
-
Cowan, D.A.1
Pointing, S.B.2
Stevens, M.I.3
Craig Cary, S.4
Stomeo, F.5
Tuffin, I.M.6
-
29
-
-
23944516000
-
A diversity of bacteriophage forms and genomes can be isolated from the surface sands of the Sahara Desert
-
Prigent M, Leroy M, Confalonieri F, Dutertre M, Du Bow MS. 2005. A diversity of bacteriophage forms and genomes can be isolated from the surface sands of the Sahara Desert. Extremophiles 9:289-296. http://dx.doi.org/10.1007/s00792-005-0444-5.
-
(2005)
Extremophiles
, vol.9
, pp. 289-296
-
-
Prigent, M.1
Leroy, M.2
Confalonieri, F.3
Dutertre, M.4
Du Bow, M.S.5
-
30
-
-
35948953592
-
Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil
-
Fierer N, Breitbart M, Nulton J, Salamon P, Lozupone C, Jones R, Robeson M, Edwards RA, Felts B, Rayhawk S, Knight R, Rohwer F, Jackson RB. 2007. Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Appl Environ Microbiol 73:7059-7066. http://dx.doi.org/10.1128/AEM.00358-07.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 7059-7066
-
-
Fierer, N.1
Breitbart, M.2
Nulton, J.3
Salamon, P.4
Lozupone, C.5
Jones, R.6
Robeson, M.7
Edwards, R.A.8
Felts, B.9
Rayhawk, S.10
Knight, R.11
Rohwer, F.12
Jackson, R.B.13
-
31
-
-
56149104616
-
An examination of the bacteriophages and bacteria of the Namib Desert
-
Prestel E, Salamitou S, Dubow MS. 2008. An examination of the bacteriophages and bacteria of the Namib Desert. J Microbiol 46:364-372. http://dx.doi.org/10.1007/s12275-008-0007-4.
-
(2008)
J Microbiol
, vol.46
, pp. 364-372
-
-
Prestel, E.1
Salamitou, S.2
Dubow, M.S.3
-
32
-
-
67749131248
-
Viruses in soils: morphological diversity and abundance in the rhizosphere
-
Swanson MM, Fraser G, Daniell TJ, Torrance L, Gregory PJ, Taliansky M. 2009. Viruses in soils: morphological diversity and abundance in the rhizosphere. Ann Appl Biol 155:51-60. http://dx.doi.org/10.1111/j.1744-7348.2009.00319.x.
-
(2009)
Ann Appl Biol
, vol.155
, pp. 51-60
-
-
Swanson, M.M.1
Fraser, G.2
Daniell, T.J.3
Torrance, L.4
Gregory, P.J.5
Taliansky, M.6
-
33
-
-
84865814031
-
Genome sequence of temperate bacteriophage Psymv2 from Antarctic Dry Valley soil isolate Psychrobacter sp. MV2
-
Meiring TL, Marla Tuffin I, Cary C, Cowan DA. 2012. Genome sequence of temperate bacteriophage Psymv2 from Antarctic Dry Valley soil isolate Psychrobacter sp. MV2. Extremophiles 16:715-726. http://dx.doi.org/10.1007/s00792-012-0467-7.
-
(2012)
Extremophiles
, vol.16
, pp. 715-726
-
-
Meiring, T.L.1
Marla Tuffin, I.2
Cary, C.3
Cowan, D.A.4
-
34
-
-
84875828860
-
Metagenomic analysis of a southern maritime Antarctic soil
-
Pearce DA, Newsham KK, Thorne MAS, Calvo-Bado L, Krsek M, Laskaris P, Hodson A, Wellington EM. 2012. Metagenomic analysis of a southern maritime Antarctic soil. Front Microbiol 3:403. http://dx.doi.org/10.3389/fmicb.2012.00403.
-
(2012)
Front Microbiol
, vol.3
, pp. 403
-
-
Pearce, D.A.1
Newsham, K.K.2
Thorne, M.A.S.3
Calvo-Bado, L.4
Krsek, M.5
Laskaris, P.6
Hodson, A.7
Wellington, E.M.8
-
35
-
-
84863992182
-
Novel bacteriophages containing a genome of another bacteriophage within their genomes
-
Swanson MM, Reavy B, Makarova KS, Cock PJ, Hopkins DW, Torrance L, Koonin EV, Taliansky M. 2012. Novel bacteriophages containing a genome of another bacteriophage within their genomes. PLoS One 7:e40683. http://dx.doi.org/10.1371/journal.pone.0040683.
-
(2012)
PLoS One
, vol.7
-
-
Swanson, M.M.1
Reavy, B.2
Makarova, K.S.3
Cock, P.J.4
Hopkins, D.W.5
Torrance, L.6
Koonin, E.V.7
Taliansky, M.8
-
36
-
-
84878313494
-
The bacteria and bacteriophages from a Mesquite Flats site of the Death Valley desert
-
Prestel E, Regeard C, Salamitou S, Neveu J, Dubow MS. 2013. The bacteria and bacteriophages from a Mesquite Flats site of the Death Valley desert. Antonie Van Leeuwenhoek 103:1329-1341. http://dx.doi.org/10.1007/s10482-013-9914-4.
-
(2013)
Antonie Van Leeuwenhoek
, vol.103
, pp. 1329-1341
-
-
Prestel, E.1
Regeard, C.2
Salamitou, S.3
Neveu, J.4
Dubow, M.S.5
-
37
-
-
84884375200
-
Direct assessment of viral diversity in soils by random PCR amplification of polymorphic DNA
-
Srinivasiah S, Lovett J, Polson S, Bhavsar J, Ghosh D, Roy K, Fuhrmann JJ, Radosevich M, Wommack KE. 2013. Direct assessment of viral diversity in soils by random PCR amplification of polymorphic DNA. Appl Environ Microbiol 79:5450-5457. http://dx.doi.org/10.1128/AEM.00268-13.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 5450-5457
-
-
Srinivasiah, S.1
Lovett, J.2
Polson, S.3
Bhavsar, J.4
Ghosh, D.5
Roy, K.6
Fuhrmann, J.J.7
Radosevich, M.8
Wommack, K.E.9
-
38
-
-
84923804547
-
Metagenomic analysis of the viral community in Namib Desert hypoliths
-
Adriaenssens EM, Van Zyl L, De Maayer P, Rubagotti E, Rybicki E, Tuffin M, Cowan DA. 2015. Metagenomic analysis of the viral community in Namib Desert hypoliths. Environ Microbiol 17:480-495. http://dx.doi.org/10.1111/1462-2920.12528.
-
(2015)
Environ Microbiol
, vol.17
, pp. 480-495
-
-
Adriaenssens, E.M.1
Van Zyl, L.2
De Maayer, P.3
Rubagotti, E.4
Rybicki, E.5
Tuffin, M.6
Cowan, D.A.7
-
39
-
-
84908307840
-
High-level diversity of tailed phages, eukaryote-associated viruses and virophage-like elements in the metaviromes of Antarctic soils
-
Zablocki O, van Zyl L, Adriaenssens EM, Rubagotti E, Tuffin M, Cary SC. 2014. High-level diversity of tailed phages, eukaryote-associated viruses and virophage-like elements in the metaviromes of Antarctic soils. Appl Environ Microbiol 80:6888-6897. http://dx.doi.org/10.1128/AEM.01525-14.
-
(2014)
Appl Environ Microbiol
, vol.80
, pp. 6888-6897
-
-
Zablocki, O.1
van Zyl, L.2
Adriaenssens, E.M.3
Rubagotti, E.4
Tuffin, M.5
Cary, S.C.6
-
40
-
-
84949190314
-
Dynamics of autochthonous soil viral communities parallels dynamics of host communities under nutrient stimulation
-
Srinivasiah S, Lovett J, Ghosh D, Roy K, Fuhrmann JJ, Radosevich M, Wommack KE. 2015. Dynamics of autochthonous soil viral communities parallels dynamics of host communities under nutrient stimulation. FEMS Microbiol Ecol 91:fiv063. http://dx.doi.org/10.1093/femsec/fiv063.
-
(2015)
FEMS Microbiol Ecol
, vol.91
-
-
Srinivasiah, S.1
Lovett, J.2
Ghosh, D.3
Roy, K.4
Fuhrmann, J.J.5
Radosevich, M.6
Wommack, K.E.7
-
41
-
-
80053370586
-
Exploring the viral world through metagenomics
-
Rosario K, Breitbart M. 2011. Exploring the viral world through metagenomics. Curr Opin Virol 1:289-297. http://dx.doi.org/10.1016/j.coviro.2011.06.004.
-
(2011)
Curr Opin Virol
, vol.1
, pp. 289-297
-
-
Rosario, K.1
Breitbart, M.2
-
42
-
-
84883186257
-
Scratching the surface of biology's dark matter
-
Springer, New York, NY
-
Youle M, Haynes M, Rohwer F. 2012. Scratching the surface of biology's dark matter, p 61-81. In Viruses: essential agents of life. Springer, New York, NY.
-
(2012)
Viruses: essential agents of life
, pp. 61-81
-
-
Youle, M.1
Haynes, M.2
Rohwer, F.3
-
43
-
-
84938150477
-
Dark matter of the biosphere: the amazing world of bacteriophage diversity
-
27 May
-
Hatfull GF. 27 May 2015. Dark matter of the biosphere: the amazing world of bacteriophage diversity. J Virol http://dx.doi.org/10.1128/JVI.01340-15.
-
(2015)
J Virol
-
-
Hatfull, G.F.1
-
46
-
-
84874734867
-
Evidence of species recruitment and development of hot desert hypolithic communities
-
Makhalanyane TP, Valverde A, Lacap DC, Pointing SB, Tuffin MI, Cowan DA. 2013. Evidence of species recruitment and development of hot desert hypolithic communities. Environ Microbiol Rep 5:219-224. http://dx.doi.org/10.1111/1758-2229.12003.
-
(2013)
Environ Microbiol Rep
, vol.5
, pp. 219-224
-
-
Makhalanyane, T.P.1
Valverde, A.2
Lacap, D.C.3
Pointing, S.B.4
Tuffin, M.I.5
Cowan, D.A.6
-
47
-
-
83155178413
-
Development of phoH as a novel signature gene for assessing marine phage diversity
-
Goldsmith DB, Crosti G, Dwivedi B, McDaniel LD, Varsani A, Suttle CA, Weinbauer MG, Sandaa RA, Breitbart M. 2011. Development of phoH as a novel signature gene for assessing marine phage diversity. Appl Environ Microbiol 77:7730-7739. http://dx.doi.org/10.1128/AEM.05531-11.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7730-7739
-
-
Goldsmith, D.B.1
Crosti, G.2
Dwivedi, B.3
McDaniel, L.D.4
Varsani, A.5
Suttle, C.A.6
Weinbauer, M.G.7
Sandaa, R.A.8
Breitbart, M.9
-
48
-
-
84886729610
-
Evidence for successional development in Antarctic hypolithic bacterial communities
-
Makhalanyane TP, Valverde A, Birkeland N-K, Cary SC, Tuffin IM, Cowan DA. 2013. Evidence for successional development in Antarctic hypolithic bacterial communities. ISME J 7:2080-2090. http://dx.doi.org/10.1038/ismej.2013.94.
-
(2013)
ISME J
, vol.7
, pp. 2080-2090
-
-
Makhalanyane, T.P.1
Valverde, A.2
Birkeland, N.-K.3
Cary, S.C.4
Tuffin, I.M.5
Cowan, D.A.6
-
49
-
-
0028982462
-
Viral abundance in aquatic systems: a comparison between marine and fresh waters
-
Maranger R, Bird DF. 1995. Viral abundance in aquatic systems: a comparison between marine and fresh waters. Mar Ecol Prog Ser 121:217-226. http://dx.doi.org/10.3354/meps121217.
-
(1995)
Mar Ecol Prog Ser
, vol.121
, pp. 217-226
-
-
Maranger, R.1
Bird, D.F.2
-
50
-
-
0036490233
-
Lysogeny and lyric viral production during a bloom of the cyanobacterium Synechococcus spp
-
Ortmann AC, Lawrence JE, Suttle CA. 2002. Lysogeny and lyric viral production during a bloom of the cyanobacterium Synechococcus spp. Microb Ecol 43:225-231. http://dx.doi.org/10.1007/s00248-001-1058-9.
-
(2002)
Microb Ecol
, vol.43
, pp. 225-231
-
-
Ortmann, A.C.1
Lawrence, J.E.2
Suttle, C.A.3
-
52
-
-
0034443286
-
Microbial biofilms: from ecology to molecular genetics
-
Davey ME, O'Toole GA. 2000. Microbial biofilms: from ecology to molecular genetics. Microbiol Mol Biol Rev 64:847-867. http://dx.doi.org/10.1128/MMBR.64.4.847-867.2000.
-
(2000)
Microbiol Mol Biol Rev
, vol.64
, pp. 847-867
-
-
Davey, M.E.1
O'Toole, G.A.2
-
53
-
-
0036711963
-
Biofilms: Microbial life on surfaces
-
Donlan RM. 2002. Biofilms: Microbial life on surfaces. Emerg Infect Dis 8:881-890. http://dx.doi.org/10.3201/eid0809.020063.
-
(2002)
Emerg Infect Dis
, vol.8
, pp. 881-890
-
-
Donlan, R.M.1
-
54
-
-
34250206964
-
Life on the rocks
-
Gorbushina AA. 2007. Life on the rocks. Environ Microbiol 9:1613-1631. http://dx.doi.org/10.1111/j.1462-2920.2007.01301.x.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1613-1631
-
-
Gorbushina, A.A.1
-
55
-
-
83855165110
-
Should we stay or should we go: mechanisms and ecological consequences for biofilm dispersal
-
McDougald D, Rice SA, Barraud N, Steinberg PD, Kjelleberg S. 2012. Should we stay or should we go: mechanisms and ecological consequences for biofilm dispersal. Nat Rev Microbiol 10:39-50.
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 39-50
-
-
McDougald, D.1
Rice, S.A.2
Barraud, N.3
Steinberg, P.D.4
Kjelleberg, S.5
-
56
-
-
60749134668
-
The biofilm life cycle and virulence of Pseudomonas aeruginosa are dependent on a filamentous prophage
-
Rice SA, Tan CH, Mikkelsen PJ, Kung V, Woo J, Tay M, Hauser A, McDougald D, Webb JS, Kjelleberg S. 2009. The biofilm life cycle and virulence of Pseudomonas aeruginosa are dependent on a filamentous prophage. ISME J 3:271-282. http://dx.doi.org/10.1038/ismej.2008.109.
-
(2009)
ISME J
, vol.3
, pp. 271-282
-
-
Rice, S.A.1
Tan, C.H.2
Mikkelsen, P.J.3
Kung, V.4
Woo, J.5
Tay, M.6
Hauser, A.7
McDougald, D.8
Webb, J.S.9
Kjelleberg, S.10
-
57
-
-
70349816730
-
Current insights into phage biodiversity and biogeography
-
Thurber RV. 2009. Current insights into phage biodiversity and biogeography. Curr Opin Microbiol 12:582-587. http://dx.doi.org/10.1016/j.mib.2009.08.008.
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 582-587
-
-
Thurber, R.V.1
-
59
-
-
0019275026
-
Effects of environmental variables and soil characteristics on virus survival in soil
-
Hurst CJ, Gerba CP, Cech I. 1980. Effects of environmental variables and soil characteristics on virus survival in soil. Appl Environ Microbiol 40: 1067-1079.
-
(1980)
Appl Environ Microbiol
, vol.40
, pp. 1067-1079
-
-
Hurst, C.J.1
Gerba, C.P.2
Cech, I.3
-
60
-
-
0033000796
-
Quantitative assessment of the inactivation of pathogenic and indicator viruses in natural water sources
-
Nasser AM, Oman SD. 1999. Quantitative assessment of the inactivation of pathogenic and indicator viruses in natural water sources. Water Res 33:1748-1752. http://dx.doi.org/10.1016/S0043-1354(98)00380-7.
-
(1999)
Water Res
, vol.33
, pp. 1748-1752
-
-
Nasser, A.M.1
Oman, S.D.2
-
61
-
-
0026615491
-
Persistence of viruses in desert soils amended with anaerobically digested sewage sludge
-
Straub TM, Pepper IL, Gerba CP. 1992. Persistence of viruses in desert soils amended with anaerobically digested sewage sludge. Appl Environ Microbiol 58:636-641.
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 636-641
-
-
Straub, T.M.1
Pepper, I.L.2
Gerba, C.P.3
-
62
-
-
84969401585
-
The meaning of soil characteristics and temperature for the survival of bacteriophages in naturally contaminated soil samples
-
Leonardopoulos J, Papaconstantinou A, Georgakopoulou-Papandreou E. 1996. The meaning of soil characteristics and temperature for the survival of bacteriophages in naturally contaminated soil samples. Acta Microbiol Hell 41:309-316.
-
(1996)
Acta Microbiol Hell
, vol.41
, pp. 309-316
-
-
Leonardopoulos, J.1
Papaconstantinou, A.2
Georgakopoulou-Papandreou, E.3
-
63
-
-
84871721355
-
Soil phage ecology: abundance, distribution, and interactions with bacterial hosts
-
Springer, New York, NY
-
Williamson KE. 2011. Soil phage ecology: abundance, distribution, and interactions with bacterial hosts, p 113-136. In Biocommunication in soil microorganisms. Springer, New York, NY.
-
(2011)
Biocommunication in soil microorganisms
, pp. 113-136
-
-
Williamson, K.E.1
-
64
-
-
67649911268
-
Metagenomic signatures of 86 microbial and viral metagenomes
-
Willner D, Thurber RV, Rohwer F. 2009. Metagenomic signatures of 86 microbial and viral metagenomes. Environ Microbiol 11:1752-1766. http://dx.doi.org/10.1111/j.1462-2920.2009.01901.x.
-
(2009)
Environ Microbiol
, vol.11
, pp. 1752-1766
-
-
Willner, D.1
Thurber, R.V.2
Rohwer, F.3
-
65
-
-
84969409733
-
Niche-dependent genetic diversity in Antarctic metaviromes
-
Zablocki O, van Zyl L, Adriaenssens EM, Rubagotti E, Tuffin M, Cary SC, Cowan D. 2014. Niche-dependent genetic diversity in Antarctic metaviromes. Bacteriophage 4:e980125. http://dx.doi.org/10.4161/21597081.2014.980125.
-
(2014)
Bacteriophage
, vol.4
-
-
Zablocki, O.1
van Zyl, L.2
Adriaenssens, E.M.3
Rubagotti, E.4
Tuffin, M.5
Cary, S.C.6
Cowan, D.7
-
66
-
-
83155190998
-
Amplification methods bias metagenomic libraries of uncultured single-stranded and double-stranded DNA viruses
-
Kim KH, Bae JW. 2011. Amplification methods bias metagenomic libraries of uncultured single-stranded and double-stranded DNA viruses. Appl Environ Microbiol 77:7663-7668. http://dx.doi.org/10.1128/AEM.00289-11.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7663-7668
-
-
Kim, K.H.1
Bae, J.W.2
-
68
-
-
54449093935
-
Amplification of uncultured single-stranded DNA viruses from rice paddy soil
-
Kim K-H, Chang H-W, Nam Y-D, Roh SW, Kim M-S, Sung Y, Jeon CO, Oh H-M, Bae J-W. 2008. Amplification of uncultured single-stranded DNA viruses from rice paddy soil. Appl Environ Microbiol 74:5975-5985. http://dx.doi.org/10.1128/AEM.01275-08.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 5975-5985
-
-
Kim, K.-H.1
Chang, H.-W.2
Nam, Y.-D.3
Roh, S.W.4
Kim, M.-S.5
Sung, Y.6
Jeon, C.O.7
Oh, H.-M.8
Bae, J.-W.9
-
69
-
-
78751575713
-
Unraveling the viral tapestry (from inside the capsid out)
-
Polson SW, Wilhelm SW, Wommack KE. 2011. Unraveling the viral tapestry (from inside the capsid out). ISME J 5:165. http://dx.doi.org/10.1038/ismej.2010.81.
-
(2011)
ISME J
, vol.5
, pp. 165
-
-
Polson, S.W.1
Wilhelm, S.W.2
Wommack, K.E.3
-
70
-
-
84883207705
-
The effect of preprocessing by sequence-independent, single-primer amplification (SISPA) on metagenomic detection of viruses
-
Karlsson OE, Belák S, Granberg F. 2013. The effect of preprocessing by sequence-independent, single-primer amplification (SISPA) on metagenomic detection of viruses. Biosecur Bioterror 11(Suppl)1:S227-S234. http://dx.doi.org/10.1089/bsp.2013.0008.
-
(2013)
Biosecur Bioterror
, vol.11
, pp. S227-S234
-
-
Karlsson, O.E.1
Belák, S.2
Granberg, F.3
-
71
-
-
84884625714
-
The origin of biased sequence depth in sequence-independent nucleic acid amplification and optimization for efficient massive parallel sequencing
-
Rosseel T, Van Borm S, Vandenbussche F, Hoffmann B, van den Berg T, Beer M, Höper D. 2013. The origin of biased sequence depth in sequence-independent nucleic acid amplification and optimization for efficient massive parallel sequencing. PLoS One 8:e76144. http://dx.doi.org/10.1371/journal.pone.0076144.
-
(2013)
PLoS One
, vol.8
-
-
Rosseel, T.1
Van Borm, S.2
Vandenbussche, F.3
Hoffmann, B.4
van den Berg, T.5
Beer, M.6
Höper, D.7
-
72
-
-
33947607974
-
Viral metagenomics
-
Delwart EL. 2007. Viral metagenomics. Rev Med Virol 17:115-131. http://dx.doi.org/10.1002/rmv.532.
-
(2007)
Rev Med Virol
, vol.17
, pp. 115-131
-
-
Delwart, E.L.1
-
73
-
-
0242657555
-
Sampling natural viral communities from soil for culture-independent analyses
-
Williamson KE, Wommack KE, Radosevich M. 2003. Sampling natural viral communities from soil for culture-independent analyses. Appl Environ Microbiol 69:6628-6633. http://dx.doi.org/10.1128/AEM.69.11.6628-6633.2003.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 6628-6633
-
-
Williamson, K.E.1
Wommack, K.E.2
Radosevich, M.3
-
74
-
-
84904865501
-
Using signature genes as tools to assess environmental viral ecology and diversity
-
Adriaenssens EM, Cowan DA. 2014. Using signature genes as tools to assess environmental viral ecology and diversity. Appl Environ Microbiol 80:4470-4480. http://dx.doi.org/10.1128/AEM.00878-14.
-
(2014)
Appl Environ Microbiol
, vol.80
, pp. 4470-4480
-
-
Adriaenssens, E.M.1
Cowan, D.A.2
-
75
-
-
84923012753
-
Viromes, not gene markers, for studying doublestranded DNA virus communities
-
Sullivan MB. 2015. Viromes, not gene markers, for studying doublestranded DNA virus communities. J Virol 89:2459-2461. http://dx.doi.org/10.1128/JVI.03289-14.
-
(2015)
J Virol
, vol.89
, pp. 2459-2461
-
-
Sullivan, M.B.1
-
76
-
-
0029762609
-
Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes
-
Chen F, Suttle CA, Short SM. 1996. Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes. Appl Environ Microbiol 62:2869-2874.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 2869-2874
-
-
Chen, F.1
Suttle, C.A.2
Short, S.M.3
-
77
-
-
84914706590
-
Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses
-
Sakowski EG, Munsell EV, Hyatt M, Kress W, Williamson SJ, Nasko DJ, Polson SW, Wommack KE. 2014. Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses. Proc Natl Acad Sci U S A 111:15786-15791. http://dx.doi.org/10.1073/pnas.1401322111.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 15786-15791
-
-
Sakowski, E.G.1
Munsell, E.V.2
Hyatt, M.3
Kress, W.4
Williamson, S.J.5
Nasko, D.J.6
Polson, S.W.7
Wommack, K.E.8
-
78
-
-
0035949626
-
A conserved genetic module that encodes the major virion components in both the coliphage T4 and the marine cyanophage S-PM2
-
Hambly E, Tétart F, Desplats C, Wilson WH, Krisch HM, Mann NH. 2001 A conserved genetic module that encodes the major virion components in both the coliphage T4 and the marine cyanophage S-PM2. Proc Natl Acad Sci U S A 98:11411-11416. http://dx.doi.org/10.1073/pnas.191174498.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 11411-11416
-
-
Hambly, E.1
Tétart, F.2
Desplats, C.3
Wilson, W.H.4
Krisch, H.M.5
Mann, N.H.6
-
79
-
-
12244252269
-
Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments
-
Short CM, Suttle CA. 2005. Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments. Appl Environ Microbiol 71:480-486. http://dx.doi.org/10.1128/AEM.71.1.480-486.2005.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 480-486
-
-
Short, C.M.1
Suttle, C.A.2
-
80
-
-
84866154398
-
Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly
-
Emerson JB, Thomas BC, Andrade K, Allen EE, Heidelberg KB, Banfielda JF. 2012. Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly. Appl Environ Microbiol 78:6309-6320 http://dx.doi.org/10.1128/AEM.01212-12.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 6309-6320
-
-
Emerson, J.B.1
Thomas, B.C.2
Andrade, K.3
Allen, E.E.4
Heidelberg, K.B.5
Banfielda, J.F.6
-
81
-
-
84886163834
-
Arid environments: their nature and extent
-
3rd ed. Thomas DSG (ed), John Wiley & Sons, Ltd., Chichester, United Kingdom
-
Thomas DSG. 2011. Arid environments: their nature and extent, p 1-16. In Thomas DSG (ed), Arid zone geomorphology: process, form and change in drylands, 3rd ed. John Wiley & Sons, Ltd., Chichester, United Kingdom. http://dx.doi.org/10.1002/9780470710777.ch1.
-
(2011)
Arid zone geomorphology: process, form and change in drylands
, pp. 1-16
-
-
Thomas, D.S.G.1
-
82
-
-
1342330910
-
Community composition and photosynthesis by photoautotrophs under quartz pebbles, southern Mojave Desert
-
Schlesinger WH, Pippen JS, Wallenstein MD, Hofmockel KS, Klepeis DM, Mahall BE. 2003. Community composition and photosynthesis by photoautotrophs under quartz pebbles, southern Mojave Desert. Ecology 84:3222-3231. http://dx.doi.org/10.1890/02-0549.
-
(2003)
Ecology
, vol.84
, pp. 3222-3231
-
-
Schlesinger, W.H.1
Pippen, J.S.2
Wallenstein, M.D.3
Hofmockel, K.S.4
Klepeis, D.M.5
Mahall, B.E.6
-
83
-
-
33746570778
-
Hypolithic cyanobacteria, dry limit of photosynthesis, and microbial ecology in the hyperarid Atacama Desert
-
Warren-Rhodes KA, Rhodes KL, Pointing SB, Ewing SA, Lacap DC, Gómez-Silva B, Amundson R, Friedmann EI, McKay CP. 2006. Hypolithic cyanobacteria, dry limit of photosynthesis, and microbial ecology in the hyperarid Atacama Desert. Microb Ecol 52:389-398. http://dx.doi.org/10.1007/s00248-006-9055-7.
-
(2006)
Microb Ecol
, vol.52
, pp. 389-398
-
-
Warren-Rhodes, K.A.1
Rhodes, K.L.2
Pointing, S.B.3
Ewing, S.A.4
Lacap, D.C.5
Gómez-Silva, B.6
Amundson, R.7
Friedmann, E.I.8
McKay, C.P.9
-
84
-
-
34547830888
-
Cyanobacterial ecology across environmental gradients and spatial scales in China's hot and cold deserts
-
Warren-Rhodes KA, Rhodes KL, Boyle LN, Pointing SB, Chen Y, Liu S, Zhuo P, McKay CP. 2007. Cyanobacterial ecology across environmental gradients and spatial scales in China's hot and cold deserts. FEMS Microbiol Ecol 61:470-482. http://dx.doi.org/10.1111/j.1574-6941.2007.00351.x.
-
(2007)
FEMS Microbiol Ecol
, vol.61
, pp. 470-482
-
-
Warren-Rhodes, K.A.1
Rhodes, K.L.2
Boyle, L.N.3
Pointing, S.B.4
Chen, Y.5
Liu, S.6
Zhuo, P.7
McKay, C.P.8
-
85
-
-
0035316222
-
Phylogenetic and morphological diversity of cyanobacteria in soil desert crusts from the Colorado Plateau
-
Garcia-Pichel F, López-Cortés A, Nübel U. 2001. Phylogenetic and morphological diversity of cyanobacteria in soil desert crusts from the Colorado Plateau. Appl Environ Microbiol 67:1902-1910. http://dx.doi.org/10.1128/AEM.67.4.1902-1910.2001.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 1902-1910
-
-
Garcia-Pichel, F.1
López-Cortés, A.2
Nübel, U.3
-
86
-
-
84884973643
-
Micro-scale determinants of bacterial diversity in soil
-
Vos M, Wolf AB, Jennings SJ, Kowalchuk GA. 2013. Micro-scale determinants of bacterial diversity in soil. FEMS Microbiol Rev 37:936-954. http://dx.doi.org/10.1111/1574-6976.12023.
-
(2013)
FEMS Microbiol Rev
, vol.37
, pp. 936-954
-
-
Vos, M.1
Wolf, A.B.2
Jennings, S.J.3
Kowalchuk, G.A.4
|