메뉴 건너뛰기




Volumn 10, Issue 12, 2015, Pages

Dose-response analysis using R

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; DOSE RESPONSE; MATHEMATICAL ANALYSIS; MATHEMATICAL COMPUTING; MATHEMATICAL PARAMETERS; MAXIMUM LIKELIHOOD METHOD; NONLINEAR SYSTEM; PROPORTIONAL HAZARDS MODEL; REGRESSION ANALYSIS; STATISTICAL MODEL; ANIMAL; HUMAN; LEAST SQUARE ANALYSIS; SOFTWARE; STATISTICAL ANALYSIS;

EID: 84956935118     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0146021     Document Type: Article
Times cited : (2429)

References (55)
  • 3
    • 84898015197 scopus 로고    scopus 로고
    • Model-based dose finding under model uncertainty using general parametric model
    • PMID: 24302486
    • Pinheiro J, Bornkamp B, Glimm E., Bretz F. Model-based dose finding under model uncertainty using general parametric model. Stat Med. 2014; 33:1646-1661. doi: 10.1002/sim.6052 PMID: 24302486
    • (2014) Stat Med. , vol.33 , pp. 1646-1661
    • Pinheiro, J.1    Bornkamp, B.2    Glimm, E.3    Bretz, F.4
  • 4
    • 37849011626 scopus 로고    scopus 로고
    • Fitting dose-response curves from bioassays and toxicity testing
    • Ranke J. Fitting dose-response curves from bioassays and toxicity testing. R News. 2006; 6:7-12.
    • (2006) R News. , vol.6 , pp. 7-12
    • Ranke, J.1
  • 6
    • 63049088788 scopus 로고    scopus 로고
    • MCPMod: An R package for the design and analysis of dose-finding studies
    • Bornkamp B, Pinheiro J, Bretz F. MCPMod: An R Package for the Design and Analysis of Dose-Finding Studies. J Stat Softw. 2009; 29(7):1-23. doi:10.18637/jss.v029.i07
    • (2009) J Stat Softw. , vol.29 , Issue.7 , pp. 1-23
    • Bornkamp, B.1    Pinheiro, J.2    Bretz, F.3
  • 8
    • 0024333309 scopus 로고
    • Random-effect models in nonlinear regression with applications to bioassay
    • Rudemo M, Ruppert D, Streibig JC Random-Effect Models in Nonlinear Regression with Applications to Bioassay. Biometrics. 1989; 45:349-362. doi:10.2307/2531482
    • (1989) Biometrics. , vol.45 , pp. 349-362
    • Rudemo, M.1    Ruppert, D.2    Streibig, J.C.3
  • 9
    • 84921850740 scopus 로고    scopus 로고
    • Statistics for analyzing ecotoxicity test data
    • Férard J, Blaise C, editors New York: Springer
    • Van der Vliet L, Ritz C. Statistics for Analyzing Ecotoxicity Test Data. In: Férard J, Blaise C, editors. Encyclopedia of Aquatic Ecotoxicology. New York: Springer; 2013. p. 1081-1096.
    • (2013) Encyclopedia of Aquatic Ecotoxicology , pp. 1081-1096
    • Van Der Vliet, L.1    Ritz, C.2
  • 10
    • 77950334172 scopus 로고    scopus 로고
    • Handling non-normality and variance heterogeneity for quantitative sublethal toxicity tests
    • PMID: 19364187
    • Ritz C, Van der Vliet L. Handling non-normality and variance heterogeneity for quantitative sublethal toxicity tests. Environ Toxicol Chem. 2009; 28:2009-2017. doi: 10.1897/08-480.1 PMID: 19364187
    • (2009) Environ Toxicol Chem. , vol.28 , pp. 2009-2017
    • Ritz, C.1    Van Der Vliet, L.2
  • 11
    • 0004116672 scopus 로고
    • 3rd ed. London: Cambridge University Press
    • Finney DJ. Probit Analysis. 3rd ed. London: Cambridge University Press; 1971.
    • (1971) Probit Analysis
    • Finney, D.J.1
  • 12
    • 84869127300 scopus 로고    scopus 로고
    • Analysis of germination data from agricultural experiments
    • Ritz C, Pipper CB, Streibig JC. Analysis of germination data from agricultural experiments. Eur J Agron. 2013; 45:1-6. doi:10.1016/j.eja.2012.10.003
    • (2013) Eur J Agron. , vol.45 , pp. 1-6
    • Ritz, C.1    Pipper, C.B.2    Streibig, J.C.3
  • 13
    • 84901248781 scopus 로고    scopus 로고
    • The effect of fertilizer level and foliar-applied calcium on seed production and germination of gerbera hybrida
    • Andreasen C, Kemezys AH, Müller R. The Effect of Fertilizer Level and Foliar-applied Calcium on Seed Production and Germination of Gerbera hybrida. HortScience. 2014; 49:538-543.
    • (2014) HortScience. , vol.49 , pp. 538-543
    • Andreasen, C.1    Kemezys, A.H.2    Müller, R.3
  • 14
    • 0002154365 scopus 로고
    • Bioassay and the practice of statistical inference
    • Finney DJ. Bioassay and the Practice of Statistical Inference. Int Stat Rev. 1979; 47:1-12. doi:10.2307/1403201
    • (1979) Int Stat Rev. , vol.47 , pp. 1-12
    • Finney, D.J.1
  • 15
    • 0032864314 scopus 로고    scopus 로고
    • A five-parameter logistic equation for investigating asymmetry of curvature in baroreflex studies
    • Ricketts JH, Head GA A five-parameter logistic equation for investigating asymmetry of curvature in baroreflex studies. Am J Physiol (Regul IntegrComp Physiol 46). 1999; 277:441-454.
    • (1999) Am J Physiol (Regul IntegrComp Physiol 46) , vol.277 , pp. 441-454
    • Ricketts, J.H.1    Head, G.A.2
  • 16
    • 84984066625 scopus 로고
    • An equation to describe dose responses where there is stimulation of growth at low dose
    • Brain P, Cousens R. An equation to describe dose responses where there is stimulation of growth at low dose. Weed Res. 1989; 29:93-96. doi:10.1111/j.1365-3180.1989.tb00845.x
    • (1989) Weed Res. , vol.29 , pp. 93-96
    • Brain, P.1    Cousens, R.2
  • 17
    • 28444475884 scopus 로고    scopus 로고
    • Improved empirical models describing hormesis
    • PMID: 16445100
    • Cedergreen N, Ritz C, Streibig JC Improved empirical models describing hormesis. Environ Toxicol Chem. 2005; 24:3166-3172. doi: 10.1897/05-014R.1 PMID: 16445100
    • (2005) Environ Toxicol Chem. , vol.24 , pp. 3166-3172
    • Cedergreen, N.1    Ritz, C.2    Streibig, J.C.3
  • 18
    • 48349095576 scopus 로고    scopus 로고
    • Model averaging in microbial risk assessment using fractional polynomials
    • PMID: 18564995
    • Namata H, Aerts M, Faes C., Teunis P. Model Averaging in Microbial Risk Assessment Using Fractional Polynomials. Risk Analysis. 2008; 28(4):891-905. doi: 10.1111/j.1539-6924.2008.01063.x PMID: 18564995
    • (2008) Risk Analysis. , vol.28 , Issue.4 , pp. 891-905
    • Namata, H.1    Aerts, M.2    Faes, C.3    Teunis, P.4
  • 20
    • 84948422646 scopus 로고    scopus 로고
    • Defining an additivity framework for mixture research in inducible whole-cell biosensors
    • PMID: 26606975
    • Martin-Betancor K., Ritz C, Fernández-Piñas F, Leganés F, Rodea-Palomares I. Defining an additivity framework for mixture research in inducible whole-cell biosensors. Sci Rep. 2015; 5:17200. doi: 10.1038/srep17200 PMID: 26606975
    • (2015) Sci Rep. , vol.5
    • Martin-Betancor, K.1    Ritz, C.2    Fernández-Piñas, F.3    Leganés, F.4    Rodea-Palomares, I.5
  • 22
    • 34447318014 scopus 로고    scopus 로고
    • Comparing model averaging with other model selection strategies for benchmark dose estimation
    • Wheeler M, Bailer AJ Comparing model averaging with other model selection strategies for benchmark dose estimation. Environ Ecol Stat. 2009; 16(1):37-51. doi:10.1007/s10651-007-0071-7
    • (2009) Environ Ecol Stat. , vol.16 , Issue.1 , pp. 37-51
    • Wheeler, M.1    Bailer, A.J.2
  • 23
    • 0036162276 scopus 로고    scopus 로고
    • Models for the estimation of a'no effect concentration'
    • Pires AM, Branco JA, Picado A, Mendonça E. Models for the estimation of a'no effect concentration'. Environmetrics. 2002; 13(1):15-27. doi:10.1002/env.501
    • (2002) Environmetrics. , vol.13 , Issue.1 , pp. 15-27
    • Pires, A.M.1    Branco, J.A.2    Picado, A.3    Mendonça, E.4
  • 24
    • 77953592073 scopus 로고    scopus 로고
    • A multi-criteria weight of evidence approach for deriving ecological benchmarks for radioactive Substances
    • PMID: 20530866
    • Garnier-Laplace J., Della-Vedova C, Andersson P, Copplestone D, Cailes C, Beresford NA, et al. A multi-criteria weight of evidence approach for deriving ecological benchmarks for radioactive substances. J Radiol Prot. 2010; 30(2):215. doi: 10.1088/0952-4746/30/2/S02 PMID: 20530866
    • (2010) J Radiol Prot. , vol.30 , Issue.2 , pp. 215
    • Garnier-Laplace, J.1    Della-Vedova, C.2    Andersson, P.3    Copplestone, D.4    Cailes, C.5    Beresford, N.A.6
  • 25
    • 80053981474 scopus 로고    scopus 로고
    • Nonlinear regression analysis of herbicide absorption studies
    • Kniss AR, Vassios JD, Nissen S.J., Ritz C. Nonlinear regression analysis of herbicide absorption studies. Weed Sci. 2011; 59(4):601-610. doi:10.1614/WS-D-11-00034.1
    • (2011) Weed Sci. , vol.59 , Issue.4 , pp. 601-610
    • Kniss, A.R.1    Vassios, J.D.2    Nissen, S.J.3    Ritz, C.4
  • 26
    • 77952283597 scopus 로고    scopus 로고
    • Towards a unified approach to dose-response modeling in ecotoxicology
    • PMID: 20821438
    • Ritz C. Towards a unified approach to dose-response modeling in ecotoxicology. Environ Toxicol Chem. 2010; 29:220-229. doi: 10.1002/etc.7 PMID: 20821438
    • (2010) Environ Toxicol Chem. , vol.29 , pp. 220-229
    • Ritz, C.1
  • 27
    • 0031898582 scopus 로고    scopus 로고
    • A general joint action model for herbicide mixtures
    • Streibig JC, Kudsk P, Jensen JE. A General Joint Action Model for Herbicide Mixtures. PestSci. 1998; 53:21-28. doi:10.1002/(SICI)1096-9063(199805)53:1%3C21::AID-PS748%3E3.3.CO;2-C
    • (1998) PestSci. , vol.53 , pp. 21-28
    • Streibig, J.C.1    Kudsk, P.2    Jensen, J.E.3
  • 28
    • 84921875361 scopus 로고    scopus 로고
    • From additivity to synergism - A modelling perspective
    • Ritz C, Streibig JC. From additivity to synergism - A modelling perspective. Synergy. 2014; 1(1):22-29. doi:10.1016/j.synres.2014.07.010
    • (2014) Synergy. , vol.1 , Issue.1 , pp. 22-29
    • Ritz, C.1    Streibig, J.C.2
  • 29
    • 84907339777 scopus 로고    scopus 로고
    • Detecting ALS and ACCase herbicide tolerant accession of echinochloa oryzoides (Ard.) fritsch
    • in rice (Oryzasativa L.) fields
    • Altop EK, Mennan H, Streibig J.C., Budak U, Ritz C. Detecting ALS and ACCase herbicide tolerant accession of Echinochloa oryzoides (Ard.) Fritsch. in rice (Oryzasativa L.) fields. Crop Prot. 2014; 65 (0):202-206. doi:10.1016/j.cropro.2014.07.011
    • (2014) Crop Prot. , vol.65 , pp. 202-206
    • Altop, E.K.1    Mennan, H.2    Streibig, J.C.3    Budak, U.4    Ritz, C.5
  • 31
    • 84907485087 scopus 로고    scopus 로고
    • On best practice optimization methods in R
    • Nash JC. On Best Practice Optimization Methods in R. J StatSoftw. 2014 9; 60(2):1-14. doi:10.18637/jss.v060.i02
    • (2014) J StatSoftw. , vol.60 , Issue.2 , pp. 1-14
    • Nash, J.C.1
  • 32
    • 65849265855 scopus 로고
    • Power transformations when fitting theoretical models to data
    • Carroll RJ, Ruppert D. Power transformations when fitting theoretical models to data. J Am Stat Assoc. 1984; 79:321-328. doi:10.1080/01621459.1984.10478052
    • (1984) J Am Stat Assoc. , vol.79 , pp. 321-328
    • Carroll, R.J.1    Ruppert, D.2
  • 35
    • 33744513096 scopus 로고    scopus 로고
    • Detecting outliers when fitting data with nonlinear regression - A new method based on robust nonlinear regression and the false discovery rate
    • Motulsky HJ, Brown RE Detecting outliers when fitting data with nonlinear regression - a new method based on robust nonlinear regression and the false discovery rate. BMC Bioinform. 2006; 7:123:1-20.
    • (2006) BMC Bioinform. , vol.7 , Issue.123 , pp. 1-20
    • Motulsky, H.J.1    Brown, R.E.2
  • 37
    • 0041303304 scopus 로고
    • Computation of high breakdown nonlinear regression parameters
    • Stromberg AJ. Computation of High Breakdown Nonlinear Regression Parameters. J Am Stat Assoc. 1993; 88(421):pp. 237-244. doi:10.2307/2290718
    • (1993) J Am Stat Assoc. , vol.88 , Issue.421 , pp. 237-244
    • Stromberg, A.J.1
  • 38
    • 0002627443 scopus 로고
    • Dose-response curves and statistical models
    • Streibig JC, Kudsk P, editors Boca Raton: CRC Press
    • Streibig JC, Rudemo M, Jensen JE Dose-response curves and statistical models. In: Streibig JC, Kudsk P, editors. Herbicide Bioassays. Boca Raton: CRC Press; 1993. p. 29-55.
    • (1993) Herbicide Bioassays , pp. 29-55
    • Streibig, J.C.1    Rudemo, M.2    Jensen, J.E.3
  • 39
    • 0344429494 scopus 로고
    • A method for determining the biological effect of herbicide mixtures
    • Streibig JC. A Method for Determining the Biological Effect of Herbicide Mixtures. Weed Sci. 1981; 29:469-473.
    • (1981) Weed Sci. , vol.29 , pp. 469-473
    • Streibig, J.C.1
  • 40
    • 0027369748 scopus 로고
    • An algorithm for robust non-linear analysis of radioimmunoassays and other bioassays
    • PMID: 8296112
    • Normolle D. An Algorithm for Robust Non-linear Analysis of Radioimmunoassays and other Bioassays. Stat Med. 1993; 12:2025-2042. doi: 10.1002/sim.4780122106 PMID: 8296112
    • (1993) Stat Med. , vol.12 , pp. 2025-2042
    • Normolle, D.1
  • 41
    • 11244271380 scopus 로고    scopus 로고
    • Diagnostic checking in regression relationships
    • Zeileis A, Hothorn T. Diagnostic Checking in Regression Relationships. R News. 2002; 2(3):7-10.
    • (2002) R News. , vol.2 , Issue.3 , pp. 7-10
    • Zeileis, A.1    Hothorn, T.2
  • 42
    • 33748314681 scopus 로고    scopus 로고
    • Object-oriented computation of sandwich estimators
    • Zeileis A. Object-oriented Computation of Sandwich Estimators. J StatSoftw. 2006; 16:1-16. doi:10.18637/jss.v016.i09
    • (2006) J StatSoftw. , vol.16 , pp. 1-16
    • Zeileis, A.1
  • 43
    • 49849092907 scopus 로고    scopus 로고
    • Simultaneous inference in general parametric models
    • PMID: 18481363
    • Hothorn T, Bretz F, Westfall P. Simultaneous Inference in General Parametric Models. Biom J. 2008; 50:346-363. doi: 10.1002/bimj.200810425 PMID: 18481363
    • (2008) Biom J. , vol.50 , pp. 346-363
    • Hothorn, T.1    Bretz, F.2    Westfall, P.3
  • 46
    • 84928215840 scopus 로고    scopus 로고
    • Statistical modeling of the hormetic dose zone and the toxic potency completes the quantitative description of hormetic dose responses
    • PMID: 25523646
    • Belz RG, Piepho HP Statistical modeling of the hormetic dose zone and the toxic potency completes the quantitative description of hormetic dose responses. Environ Toxicol Chem. 2015; 34(5):1169-1177. doi: 10.1002/etc.2857 PMID: 25523646
    • (2015) Environ Toxicol Chem. , vol.34 , Issue.5 , pp. 1169-1177
    • Belz, R.G.1    Piepho, H.P.2
  • 47
    • 0033780785 scopus 로고    scopus 로고
    • Incorporating model uncertainties along with data uncertainties in microbial risk assessment
    • PMID: 11029270
    • Kang SH, Kodell RL, Chen JJ Incorporating Model Uncertainties along with Data Uncertainties in Microbial Risk Assessment. RegulToxicol Pharmacol. 2000; 32(1):68-72. doi: 10.1006/rtph.2000.1404 PMID: 11029270
    • (2000) RegulToxicol Pharmacol. , vol.32 , Issue.1 , pp. 68-72
    • Kang, S.H.1    Kodell, R.L.2    Chen, J.J.3
  • 48
    • 0344440974 scopus 로고    scopus 로고
    • Linking fluorescence induction curve and biomass in herbicide screening
    • PMID: 14667052
    • Christensen MG, Teicher HB, Streibig JC. Linking fluorescence induction curve and biomass in herbicide screening. Pest Manag Sci. 2003; 59:1303-1310. doi: 10.1002/ps.763 PMID: 14667052
    • (2003) Pest Manag Sci. , vol.59 , pp. 1303-1310
    • Christensen, M.G.1    Teicher, H.B.2    Streibig, J.C.3
  • 49
    • 33750296472 scopus 로고    scopus 로고
    • Relative potency in nonsimilar dose-response curves
    • Ritz C, Cedergreen N, Jensen JE, Streibig JC. Relative potency in nonsimilar dose-response curves. Weed Sci. 2006; 54:407-412. doi:10.1614/WS-05-185R.1
    • (2006) Weed Sci. , vol.54 , pp. 407-412
    • Ritz, C.1    Cedergreen, N.2    Jensen, J.E.3    Streibig, J.C.4
  • 50
    • 84874331187 scopus 로고    scopus 로고
    • A unified framework for benchmark dose estimation applied to mixed models and model averaging
    • Ritz C, Gerhard D, Hothorn LA A Unified Framework for Benchmark Dose Estimation Applied to Mixed Models and Model Averaging. StatBiopharm Res. 2013; 5(1):79-90. doi:10.1080/19466315.2012.757559
    • (2013) StatBiopharm Res. , vol.5 , Issue.1 , pp. 79-90
    • Ritz, C.1    Gerhard, D.2    Hothorn, L.A.3
  • 51
    • 84922595724 scopus 로고    scopus 로고
    • Simultaneous inference for model averaging of derived parameters
    • PMID: 24952957
    • Jensen SM, Ritz C. Simultaneous Inference for Model Averaging of Derived Parameters. Risk Anal. 2015; 35:68-76. doi: 10.1111/risa.12242 PMID: 24952957
    • (2015) Risk Anal. , vol.35 , pp. 68-76
    • Jensen, S.M.1    Ritz, C.2
  • 52
    • 84864802045 scopus 로고    scopus 로고
    • The impact of data transformations on concentration-response modeling
    • PMID: 22828011
    • Weimer M, Jiang X, Ponta O, Stanzel S, Freyberger A, Kopp-Schneider A. The impact of data transformations on concentration-response modeling. Toxicol Lett. 2012; 213(2):292-298. doi: 10.1016/j.toxlet.2012.07.012 PMID: 22828011
    • (2012) Toxicol Lett. , vol.213 , Issue.2 , pp. 292-298
    • Weimer, M.1    Jiang, X.2    Ponta, O.3    Stanzel, S.4    Freyberger, A.5    Kopp-Schneider, A.6
  • 54
    • 84970919249 scopus 로고    scopus 로고
    • Marginalization in nonlinear mixed-effects models - With an application to dose-response analysis
    • Gerhard D, Ritz C. Marginalization in nonlinear mixed-effects models - with an application to dose-response analysis. Submitted. 2015.
    • (2015) Submitted.
    • Gerhard, D.1    Ritz, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.