-
1
-
-
84860357325
-
Genomic imprinting: Recognition and marking of imprinted loci
-
Abramowitz, L.K., and, Bartolomei, M.S., (2012) Genomic imprinting: recognition and marking of imprinted loci. Curr. Opin. Genet. Dev. 22, 72-78.
-
(2012)
Curr. Opin. Genet. Dev.
, vol.22
, pp. 72-78
-
-
Abramowitz, L.K.1
Bartolomei, M.S.2
-
2
-
-
80455173456
-
Mammalian genomic imprinting
-
Bartolomei, M.S., and, Ferguson-Smith, A.C., (2011) Mammalian genomic imprinting. Cold Spring Harb. Perspect. Biol. 3, a002592.
-
(2011)
Cold Spring Harb. Perspect. Biol.
, vol.3
, pp. a002592
-
-
Bartolomei, M.S.1
Ferguson-Smith, A.C.2
-
3
-
-
79955079070
-
Genome demethylation and imprinting in the endosperm
-
Bauer, M.J., and, Fischer, R.L., (2011) Genome demethylation and imprinting in the endosperm. Curr. Opin. Plant Biol. 14, 162-167.
-
(2011)
Curr. Opin. Plant Biol.
, vol.14
, pp. 162-167
-
-
Bauer, M.J.1
Fischer, R.L.2
-
4
-
-
84907042232
-
Dynamic transcriptome landscape of maize embryo and endosperm development
-
Chen, J., Zeng, B., Zhang, M., Xie, S., Wang, G., Hauck, A., and, Lai, J., (2014) Dynamic transcriptome landscape of maize embryo and endosperm development. Plant Physiol. 166, 252-264.
-
(2014)
Plant Physiol.
, vol.166
, pp. 252-264
-
-
Chen, J.1
Zeng, B.2
Zhang, M.3
Xie, S.4
Wang, G.5
Hauck, A.6
Lai, J.7
-
5
-
-
77955689247
-
Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: Insights from genome-wide analysis and multi-specific comparison
-
Du, J., Tian, Z., Hans, C.S., Laten, H.M., Cannon, S.B., Jackson, S.A., Shoemaker, R.C., and, Ma, J., (2010a) Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison. Plant J. 63, 584-598.
-
(2010)
Plant J.
, vol.63
, pp. 584-598
-
-
Du, J.1
Tian, Z.2
Hans, C.S.3
Laten, H.M.4
Cannon, S.B.5
Jackson, S.A.6
Shoemaker, R.C.7
Ma, J.8
-
6
-
-
77954299992
-
AgriGO: A GO analysis toolkit for the agricultural community
-
Du, Z., Zhou, X., Ling, Y., Zhang, Z., and, Su, Z., (2010b) agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res. 38, W64-W70.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W64-W70
-
-
Du, Z.1
Zhou, X.2
Ling, Y.3
Zhang, Z.4
Su, Z.5
-
7
-
-
84904048068
-
Imprinting in rice: The role of DNA and histone methylation in modulating parent-of-origin specific expression and determining transcript start sites
-
Du, M., Luo, M., Zhang, R., Finnegan, E.J., and, Koltunow, A.M., (2014) Imprinting in rice: the role of DNA and histone methylation in modulating parent-of-origin specific expression and determining transcript start sites. Plant J. 79, 232-242.
-
(2014)
Plant J.
, vol.79
, pp. 232-242
-
-
Du, M.1
Luo, M.2
Zhang, R.3
Finnegan, E.J.4
Koltunow, A.M.5
-
8
-
-
84908046982
-
Allopolyploidy, diversification, and the Miocene grassland expansion
-
Estep, M.C., McKain, M.R., Vela Diaz, D., Zhong, J., Hodge, J.G., Hodkinson, T.R., Layton, D.J., Malcomber, S.T., Pasquet, R., and, Kellogg, E.A., (2014) Allopolyploidy, diversification, and the Miocene grassland expansion. Proc. Natl Acad. Sci. USA, 111, 15149-15154.
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 15149-15154
-
-
Estep, M.C.1
McKain, M.R.2
Vela Diaz, D.3
Zhong, J.4
Hodge, J.G.5
Hodkinson, T.R.6
Layton, D.J.7
Malcomber, S.T.8
Pasquet, R.9
Kellogg, E.A.10
-
9
-
-
34047093266
-
Convergent evolution of genomic imprinting in plants and mammals
-
Feil, R., and, Berger, F., (2007) Convergent evolution of genomic imprinting in plants and mammals. Trends Genet. 23, 192-199.
-
(2007)
Trends Genet.
, vol.23
, pp. 192-199
-
-
Feil, R.1
Berger, F.2
-
10
-
-
0028535368
-
The regulation of gene expression in transformed maize aleurone and endosperm protoplasts. Analysis of promoter activity, intron enhancement, and mRNA untranslated regions on expression
-
Gallie, D.R., and, Young, T.E., (1994) The regulation of gene expression in transformed maize aleurone and endosperm protoplasts. Analysis of promoter activity, intron enhancement, and mRNA untranslated regions on expression. Plant Physiol. 106, 929-939.
-
(1994)
Plant Physiol.
, vol.106
, pp. 929-939
-
-
Gallie, D.R.1
Young, T.E.2
-
11
-
-
84888628324
-
Genomic imprinting: Insights from plants
-
Gehring, M., (2013) Genomic imprinting: insights from plants. Annu. Rev. Genet. 47, 187-208.
-
(2013)
Annu. Rev. Genet.
, vol.47
, pp. 187-208
-
-
Gehring, M.1
-
12
-
-
67149086996
-
Extensive demethylation of repetitive elements during seed development underlies gene imprinting
-
Gehring, M., Bubb, K.L., and, Henikoff, S., (2009) Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science, 324, 1447-1451.
-
(2009)
Science
, vol.324
, pp. 1447-1451
-
-
Gehring, M.1
Bubb, K.L.2
Henikoff, S.3
-
13
-
-
80051745935
-
Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds
-
Gehring, M., Missirian, V., and, Henikoff, S., (2011) Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds. PLoS One, 6, e23687.
-
(2011)
PLoS One
, vol.6
, pp. e23687
-
-
Gehring, M.1
Missirian, V.2
Henikoff, S.3
-
14
-
-
77955299096
-
High-resolution analysis of parent-of-origin allelic expression in the mouse brain
-
Gregg, C., Zhang, J., Weissbourd, B., Luo, S., Schroth, G.P., Haig, D., and, Dulac, C., (2010) High-resolution analysis of parent-of-origin allelic expression in the mouse brain. Science, 329, 643-648.
-
(2010)
Science
, vol.329
, pp. 643-648
-
-
Gregg, C.1
Zhang, J.2
Weissbourd, B.3
Luo, S.4
Schroth, G.P.5
Haig, D.6
Dulac, C.7
-
15
-
-
79952143430
-
Regulation of imprinted gene expression in Arabidopsis endosperm
-
Hsieh, T.F., Shin, J., Uzawa, R., et al. (2011) Regulation of imprinted gene expression in Arabidopsis endosperm. Proc. Natl Acad. Sci. USA, 108, 1755-1762.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 1755-1762
-
-
Hsieh, T.F.1
Shin, J.2
Uzawa, R.3
-
16
-
-
0002569067
-
Dependence of the R-mottled aleurone phenotype in maize on mode of sexual transmission
-
Kermicle, J.L., (1970) Dependence of the R-mottled aleurone phenotype in maize on mode of sexual transmission. Genetics, 66, 69-85.
-
(1970)
Genetics
, vol.66
, pp. 69-85
-
-
Kermicle, J.L.1
-
17
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim, D., Pertea, G., Trapnell, C., Pimentel, H., Kelley, R., and, Salzberg, S.L., (2013) TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36.
-
(2013)
Genome Biol.
, vol.14
, pp. R36
-
-
Kim, D.1
Pertea, G.2
Trapnell, C.3
Pimentel, H.4
Kelley, R.5
Salzberg, S.L.6
-
18
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
the 1000 Genome Project Data Processing Subgroup
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., and the 1000 Genome Project Data Processing Subgroup. (2009) The sequence alignment/map format and SAMtools. Bioinformatics, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
19
-
-
84901649762
-
Temporal patterns of gene expression in developing maize endosperm identified through transcriptome sequencing
-
Li, G., Wang, D., Yang, R., et al. (2014) Temporal patterns of gene expression in developing maize endosperm identified through transcriptome sequencing. Proc. Natl Acad. Sci. USA, 111, 7582-7587.
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 7582-7587
-
-
Li, G.1
Wang, D.2
Yang, R.3
-
21
-
-
79959818388
-
A genome-wide survey of imprinted genes in rice seeds reveals imprinting primarily occurs in the endosperm
-
Luo, M., Taylor, J.M., Spriggs, A., Zhang, H., Wu, X., Russell, S., Singh, M., and, Koltunow, A., (2011) A genome-wide survey of imprinted genes in rice seeds reveals imprinting primarily occurs in the endosperm. PLoS Genet. 7, e1002125.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1002125
-
-
Luo, M.1
Taylor, J.M.2
Spriggs, A.3
Zhang, H.4
Wu, X.5
Russell, S.6
Singh, M.7
Koltunow, A.8
-
22
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson, A.H., Bowers, J.E., Bruggmann, R., et al. (2009) The Sorghum bicolor genome and the diversification of grasses. Nature, 457, 551-556.
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
Bowers, J.E.2
Bruggmann, R.3
-
23
-
-
84906325490
-
Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting
-
Pignatta, D., Erdmann, R.M., Scheer, E., Picard, C.L., Bell, G.W., and, Gehring, M., (2014) Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting. eLife, 3, e03198.
-
(2014)
ELife
, vol.3
, pp. e03198
-
-
Pignatta, D.1
Erdmann, R.M.2
Scheer, E.3
Picard, C.L.4
Bell, G.W.5
Gehring, M.6
-
25
-
-
84869436033
-
The origin and evolution of genomic imprinting and viviparity in mammals
-
Renfree, M.B., Suzuki, S., and, Kaneko-Ishino, T., (2013) The origin and evolution of genomic imprinting and viviparity in mammals. Philos. Trans. R. Soc. Lond. B Biol. Sci. 368, 20120151.
-
(2013)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.368
, pp. 20120151
-
-
Renfree, M.B.1
Suzuki, S.2
Kaneko-Ishino, T.3
-
26
-
-
52949153556
-
A mechanistic view of genomic imprinting
-
Sha, K., (2008) A mechanistic view of genomic imprinting. Annu. Rev. Genomics Hum. Genet. 9, 197-216.
-
(2008)
Annu. Rev. Genomics Hum. Genet.
, vol.9
, pp. 197-216
-
-
Sha, K.1
-
27
-
-
84863393179
-
Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm
-
Waters, A.J., Makarevitch, I., Eichten, S.R., Swanson-Wagner, R.A., Yeh, C.T., Xu, W., Schnable, P.S., Vaughn, M.W., Gehring, M., and, Springer, N.M., (2011) Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm. Plant Cell, 23, 4221-4233.
-
(2011)
Plant Cell
, vol.23
, pp. 4221-4233
-
-
Waters, A.J.1
Makarevitch, I.2
Eichten, S.R.3
Swanson-Wagner, R.A.4
Yeh, C.T.5
Xu, W.6
Schnable, P.S.7
Vaughn, M.W.8
Gehring, M.9
Springer, N.M.10
-
28
-
-
84888377186
-
Comprehensive analysis of imprinted genes in maize reveals allelic variation for imprinting and limited conservation with other species
-
Waters, A.J., Bilinski, P., Eichten, S.R., Vaughn, M.W., Ross-Ibarra, J., Gehring, M., and, Springer, N.M., (2013) Comprehensive analysis of imprinted genes in maize reveals allelic variation for imprinting and limited conservation with other species. Proc. Natl Acad. Sci. USA, 110, 19639-19644.
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 19639-19644
-
-
Waters, A.J.1
Bilinski, P.2
Eichten, S.R.3
Vaughn, M.W.4
Ross-Ibarra, J.5
Gehring, M.6
Springer, N.M.7
-
29
-
-
79959848590
-
High-resolution analysis of parent-of-origin allelic expression in the Arabidopsis endosperm
-
Wolff, P., Weinhofer, I., Seguin, J., Roszak, P., Beisel, C., Donoghue, M.T., Spillane, C., Nordborg, M., Rehmsmeier, M., and, Kohler, C., (2011) High-resolution analysis of parent-of-origin allelic expression in the Arabidopsis endosperm. PLoS Genet. 7, e1002126.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1002126
-
-
Wolff, P.1
Weinhofer, I.2
Seguin, J.3
Roszak, P.4
Beisel, C.5
Donoghue, M.T.6
Spillane, C.7
Nordborg, M.8
Rehmsmeier, M.9
Kohler, C.10
-
30
-
-
0348044518
-
Imprinting of the MEA polycomb gene is controlled by antagonism between MET1 methyltransferase and DME glycosylase
-
Xiao, W., Gehring, M., Choi, Y., Margossian, L., Pu, H., Harada, J.J., Goldberg, R.B., Pennell, R.I., and, Fischer, R.L., (2003) Imprinting of the MEA polycomb gene is controlled by antagonism between MET1 methyltransferase and DME glycosylase. Dev. Cell, 5, 891-901.
-
(2003)
Dev. Cell
, vol.5
, pp. 891-901
-
-
Xiao, W.1
Gehring, M.2
Choi, Y.3
Margossian, L.4
Pu, H.5
Harada, J.J.6
Goldberg, R.B.7
Pennell, R.I.8
Fischer, R.L.9
-
31
-
-
84886516748
-
Dynamic expression of imprinted genes associates with maternally controlled nutrient allocation during maize endosperm development
-
Xin, M., Yang, R., Li, G., et al. (2013) Dynamic expression of imprinted genes associates with maternally controlled nutrient allocation during maize endosperm development. Plant Cell, 25, 3212-3227.
-
(2013)
Plant Cell
, vol.25
, pp. 3212-3227
-
-
Xin, M.1
Yang, R.2
Li, G.3
-
32
-
-
84903186608
-
Genomic imprinting, methylation and parent-of-origin effects in reciprocal hybrid endosperm of castor bean
-
Xu, W., Dai, M., Li, F., and, Liu, A., (2014) Genomic imprinting, methylation and parent-of-origin effects in reciprocal hybrid endosperm of castor bean. Nucleic Acids Res. 42, 6987-6998.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 6987-6998
-
-
Xu, W.1
Dai, M.2
Li, F.3
Liu, A.4
-
33
-
-
78649810751
-
Local DNA hypomethylation activates genes in rice endosperm
-
Zemach, A., Kim, M.Y., Silva, P., Rodrigues, J.A., Dotson, B., Brooks, M.D., and, Zilberman, D., (2010) Local DNA hypomethylation activates genes in rice endosperm. Proc. Natl Acad. Sci. USA, 107, 18729-18734.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 18729-18734
-
-
Zemach, A.1
Kim, M.Y.2
Silva, P.3
Rodrigues, J.A.4
Dotson, B.5
Brooks, M.D.6
Zilberman, D.7
-
34
-
-
34347328174
-
Endosperm-specific hypomethylation, and meiotic inheritance and variation of DNA methylation level and pattern in sorghum (Sorghum bicolor L.) inter-strain hybrids
-
Zhang, M.S., Yan, H.Y., Zhao, N., Lin, X.Y., Pang, J.S., Xu, K.Z., Liu, L.X., and, Liu, B., (2007) Endosperm-specific hypomethylation, and meiotic inheritance and variation of DNA methylation level and pattern in sorghum (Sorghum bicolor L.) inter-strain hybrids. Theor. Appl. Genet. 115, 195-207.
-
(2007)
Theor. Appl. Genet.
, vol.115
, pp. 195-207
-
-
Zhang, M.S.1
Yan, H.Y.2
Zhao, N.3
Lin, X.Y.4
Pang, J.S.5
Xu, K.Z.6
Liu, L.X.7
Liu, B.8
-
35
-
-
79961183575
-
Tissue-specific differences in cytosine methylation and their association with differential gene expression in sorghum
-
Zhang, M., Xu, C., von Wettstein, D., and, Liu, B., (2011a) Tissue-specific differences in cytosine methylation and their association with differential gene expression in sorghum. Plant Physiol. 156, 1955-1966.
-
(2011)
Plant Physiol.
, vol.156
, pp. 1955-1966
-
-
Zhang, M.1
Xu, C.2
Von Wettstein, D.3
Liu, B.4
-
36
-
-
84055178968
-
Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endosperm
-
Zhang, M., Zhao, H., Xie, S., et al. (2011b) Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endosperm. Proc. Natl Acad. Sci. USA, 108, 20042-20047.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 20042-20047
-
-
Zhang, M.1
Zhao, H.2
Xie, S.3
-
37
-
-
84874493629
-
Persistent whole-chromosome aneuploidy is generally associated with nascent allohexaploid wheat
-
Zhang, H., Bian, Y., Gou, X., et al. (2013) Persistent whole-chromosome aneuploidy is generally associated with nascent allohexaploid wheat. Proc. Natl Acad. Sci. USA, 110, 3447-3452.
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 3447-3452
-
-
Zhang, H.1
Bian, Y.2
Gou, X.3
-
38
-
-
84891701738
-
Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize
-
Zhang, M., Xie, S., Dong, X., et al. (2014) Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize. Genome Res. 24, 167-176.
-
(2014)
Genome Res.
, vol.24
, pp. 167-176
-
-
Zhang, M.1
Xie, S.2
Dong, X.3
|