The evaluation and application of multilocus variable number tandem repeat analysis (MLVA) for the molecular epidemiological study of Salmonella enterica subsp. enterica serovar Enteritidis infection

Annals of Clinical Microbiology and Antimicrobials

Volumn 15, Issue 1, 2016, Pages

  Liu, Yao ^a   Shi, Xiaolu ^b   Li, Yinghui ^b   Chen, Qiongcheng ^b   Jiang, Min ^b   Li, Wanli ^a   Qiu, Yaqun ^b   Lin, Yiman ^b   Jiang, Yixiang ^b   Kan, Biao ^d   Sun, Qun ^a   Hu, Qinghua ^b,c  

^a SICHUAN UNIVERSITY   (China)

^b SHENZHEN CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^c SHENZHEN UNIVERSITY   (China)

^d CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

Author keywords

Epidemiological study; MLVA; PFGE; S. Enteritidis

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTERIUM DETECTION; BACTERIUM ISOLATE; CONTROLLED STUDY; DATA BASE; EPIDEMIC; HUMAN; INFECTION CONTROL; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; MULTILOCUS VARIABLE NUMBER TANDEM REPEAT ANALYSIS; NONHUMAN; PULSED FIELD GEL ELECTROPHORESIS; SALMONELLA ENTERICA SEROVAR ENTERITIDIS; SALMONELLOSIS; VARIABLE NUMBER OF TANDEM REPEAT; BACTERIUM IDENTIFICATION; CHINA; CLASSIFICATION; EPIDEMIOLOGY; EVALUATION STUDY; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHYLOGENY; PROCEDURES; SALMONELLA INFECTIONS;

BACTERIAL TYPING TECHNIQUES; CHINA; DISEASE OUTBREAKS; ELECTROPHORESIS, GEL, PULSED-FIELD; EPIDEMIOLOGIC STUDIES; HUMANS; MINISATELLITE REPEATS; MOLECULAR TYPING; PHYLOGENY; SALMONELLA ENTERITIDIS; SALMONELLA INFECTIONS;

EID: 84956698484     PISSN: None     EISSN: 14760711     Source Type: Journal    
DOI: 10.1186/s12941-016-0119-3     Document Type: Article

References (33)

1. Hong Y, Liu T, Lee MD, Hofacre CL, Maier M, White DG, Ayers S, Wang L, Berghaus R, Maurer J. A rapid screen of broth enrichments for Salmonella enterica serovars enteritidis, Hadar, Heidelberg, and Typhimurium by Using an allelotyping multiplex PCR that targets O- and H-antigen alleles. J Food Prot. 2009;72(10):2198-201.
2. Majowicz SE, Musto J, Scallan E, Angulo FJ, Kirk M, O'Brien SJ, Jones TF, Fazil A, Hoekstra RM. The global burden of nontyphoidal Salmonella gastroenteritis. Clin Infect Dis. 2010;50(6):882-9.
3. Ran L, Wu S, Gao Y, Zhang X, Feng Z, Wang Z, Kan B, Klena JD, Lo Fo Wong DM, Angulo FJ, et al. Laboratory-based surveillance of nontyphoidal Salmonella infections in China. Foodborne Pathog Dis. 2011;8(8):921-7.
4. Sabat AJ, Budimir A, Nashev D, Sa-Leao R, van Dijl J, Laurent F, Grundmann H, Friedrich AW. Overview of molecular typing methods for outbreak detection and epidemiological surveillance. Euro Surveill. 2013;18(4):20380.
5. Deng X, Shariat N, Driebe EM, Roe CC, Tolar B, Trees E, Keim P, Zhang W, Dudley EG, Fields PI, et al. Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis. J Clin Microbiol. 2015;53(1):212-8.
6. Swaminathan B, Barrett TJ, Hunter SB, Tauxe RV. PulseNet: the molecular subtyping network for foodborne bacterial disease surveillance, United States. Emerging Infect Dis. 2001;7(3):382-9.
7. Barrett TJ, Lior H, Green JH, Khakhria R, Wells JG, Bell BP, Greene KD, Lewis J, Griffin PM. Laboratory investigation of a multistate food-borne outbreak of Escherichia coli O157:H7 by using pulsed-field gel electrophoresis and phage typing. J Clin Microbiol. 1994;32(12):3013-7.
8. Cavallaro E, Date K, Medus C, Meyer S, Miller B, Kim C, Nowicki S, Cosgrove S, Sweat D, Phan Q, et al. Salmonella typhimurium infections associated with peanut products. N Engl J Med. 2011;365(7):601-10.
9. Gaffga NH, Behravesh CB, Ettestad PJ, Smelser CB, Rhorer AR, Cronquist AB, Comstock NA, Bidol SA, Patel NJ, Gerner-Smidt P, et al. Outbreak of salmonellosis linked to live poultry from a mail-order hatchery. N Engl J Med. 2012;366(22):2065-73.
10. Behravesh CB, Mody RK, Jungk J, Gaul L, Redd JT, Chen S, Cosgrove S, Hedican E, Sweat D, Chavez-Hauser L, et al. 2008 outbreak of Salmonella Saintpaul infections associated with raw produce. N Engl J Med. 2011;364(10):918-27.
11. Sandt CH, Krouse DA, Cook CR, Hackman AL, Chmielecki WA, Warren NG. The key role of pulsed-field gel electrophoresis in investigation of a large multiserotype and multistate food-borne outbreak of Salmonella infections centered in Pennsylvania. J Clin Microbiol. 2006;44(9):3208-12.
12. Sintchenko V, Wang Q, Howard P, Ha CW, Kardamanidis K, Musto J, Gilbert GL. Improving resolution of public health surveillance for human Salmonella enterica serovar Typhimurium infection: 3 years of prospective multiple-locus variable-number tandem-repeat analysis (MLVA). BMC Infect Dis. 2012;12(1):78.
13. Wuyts V, Mattheus W, de Bex GL, Wildemauwe C, Roosens NH, Marchal K, De Keersmaecker SC, Bertrand S. MLVA as a tool for public health surveillance of human Salmonella Typhimurium: prospective study in Belgium and evaluation of MLVA loci stability. PLoS ONE. 2013;8(12):e84055.
14. Bertrand S, de Bex GL, Wildemauwe C, Lunguya O, Phoba MF, Ley B, Jacobs J, Vanhoof R, Mattheus W. Multi locus variable-number tandem repeat (MLVA) typing tools improved the surveillance of Salmonella Enteritidis: A 6 Years retrospective study. PLoS ONE. 2015;10(2):e0117950.
15. Kim J, Hyeon JY, Lee E, Lee D, Kim YJ, Kim S. Molecular epidemiological analysis of five outbreaks associated with Salmonella enterica serovar Enteritidis between 2008 and 2010 on Jeju Island, Republic of Korea. Foodborne Pathog Dis. 2014;11(1):38-42.
16. Jay MT, Cooley M, Carychao D, Wiscomb GW, Sweitzer RA, Crawford-Miksza L, Farrar JA, Lau DK, O'Connell J, Millington A, et al. Escherichia coli O157:H7 in feral swine near spinach fields and cattle, central California coast. Emerg Infect Dis. 2007;13(12):1908-11.
17. Perry N, Cheasty T, Dallman T, Launders N, Willshaw G. Application of multilocus variable number tandem repeat analysis to monitor Verocytotoxin-producing Escherichia coli O157 phage type 8 in England and Wales: emergence of a profile associated with a national outbreak. J Appl Microbiol. 2013;115(4):1052-8.
18. Kimura B, Sekine Y, Takahashi H, Tanaka Y, Obata H, Kai A, Morozumi S, Fujii T. Multiple-locus variable-number of tandem-repeats analysis distinguishes Vibrio parahaemolyticus pandemic O3: K6 strains. J Microbiol Methods. 2008;72(3):313-20.
19. Hopkins KL, Peters TM, de Pinna E, Wain J. Standardisation of multilocus variable-number tandem-repeat analysis (MLVA) for subtyping of Salmonella enterica serovar Enteritidis. Euro Surveill. 2011;16(32):19942.
20. Lindstedt BA, Torpdahl M, Vergnaud G, Le Hello S, Weill FX, Tietze E, Malorny B, Prendergast DM, Ghallchoir EN, Lista RF, et al. Use of multilocus variable-number tandem repeat analysis (MLVA) in eight European countries, 2012. Euro Surveill. 2013;18(4):20385.
21. PulseNet Standard Operating Procedure for Analysis of. MLVA Data of Salmonella enterica serotype Enteritidis in. BioNumerics- Beckman Coulter CEQ 8000/8800/GeXP Data (http://www.cdc.gov/pulsenet/PDF/salmonella-mlva-e-beckman-508c.pdf ).
22. Ke B, Sun J, He D, Li X, Liang Z, Ke CW. Serovar distribution, antimicrobial resistance profiles, and PFGE typing of Salmonella enterica strains isolated from 2007-2012 in Guangdong, China. BMC Infect Dis. 2014;14:338.
23. Ribot EM, Fair MA, Gautom R, Cameron DN, Hunter SB, Swaminathan B, Barrett TJ. Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet. Foodborne Pathog Dis. 2006;3(1):59-67.
24. Hunter SB, Vauterin P, Lambert-Fair MA, Van Duyne MS, Kubota K, Graves L, Wrigley D, Barrett T, Ribot E. Establishment of a universal size standard strain for use with the PulseNet standardized pulsed-field gel electrophoresis protocols: converting the national databases to the new size standard. J Clin Microbiol. 2005;43(3):1045-50.
25. Hudson RR. Genetic Data Analysis. Methods for Discrete Population Genetic Data. Bruce S. Weir. Sinauer, Sunderland, MA, 1990. xiv, 377 pp. illus. $48; paper, $27. Science. 1990;250(4980):575.
26. Grundmann H, Hori S, Tanner G. Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms. J Clin Microbiol. 2001;39(11):4190-2.
27. Boxrud D, Pederson-Gulrud K, Wotton J, Medus C, Lyszkowicz E, Besser J, Bartkus J. Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype Enteritidis. J Clin Microbiol. 2007;45(2):536-43.
28. Cho S, Boxrud DJ, Bartkus JM, Whittam TS, Saeed M. Multiple-locus variable-number tandem repeat analysis of Salmonella Enteritidis isolates from human and non-human sources using a single multiplex PCR. FEMS Microbiol Lett. 2007;275(1):16-23.
29. Malorny B, Junker E, Helmuth R. Multi-locus variable-number tandem repeat analysis for outbreak studies of Salmonella enterica serotype Enteritidis. BMC Microbiol. 2008;8:84.
30. Campioni F, Davis M, Medeiros MIC, Falcao JP, Shah DH. MLVA typing reveals higher genetic homogeneity among < i > S Enteritidis strains isolated from food, humans and chickens in Brazil in comparison to the North American strains. Int J Food Microbiol. 2013;162(2):174-81.
31. Jing L, Bao-wei D, Jie L, Biao K, Mei-ying Y. Characterization of Salmonella enteritidis with pulsed-field gel electrophoresis in China. Dis Surveill. 2013;8(6):434-8 (in Chinese).
32. Song P, Zhu Y, Mao X, Li Q, An L. Assessing spatial accessibility to maternity units in Shenzhen, China. PLoS ONE. 2013;8(7):e70227.
33. Multistate Outbreak of Human Salmonella Enteritidis Infections Associated with shell eggs (Final Update) (http://www.cdc.gov/salmonella/2010/shell-eggs-12-2-10.html ).