Insights into the regulation of C4 leaf development from comparative transcriptomic analysis

Current Opinion in Plant Biology

Volumn 30, Issue , 2016, Pages 1-10

  Huang, Chi Fa ^a,b   Chang, Yao Ming ^a   Lin, Jinn Jy ^a,b,c   Yu, Chun Ping ^d   Lin, Hsin Hung ^a   Liu, Wen Yu ^a   Yeh, Suying ^e   Tu, Shih Long ^f   Wu, Shu Hsing ^f   Ku, Maurice SB ^e,g   Li, Wen Hsiung ^a,h  

^a BIODIVERSITY RESEARCH CENTER   (Taiwan)

^b NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^c INSTITUTE OF INFORMATION SCIENCE   (Taiwan)

^d NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^e NATIONAL CHIAYI UNIVERSITY   (Taiwan)

^f INSTITUTE OF PLANT AND MICROBIAL BIOLOGY   (Taiwan)

^g WASHINGTON STATE UNIVERSITY   (United States)

^h UNIVERSITY OF CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PLANT PROTEIN; TRANSCRIPTOME;

ANGIOSPERM; BIOLOGICAL MODEL; CYTOLOGY; FLAVERIA; GENETICS; METABOLISM; PHOTOSYNTHESIS; PHYSIOLOGY; PLANT LEAF;

ANGIOSPERMS; FLAVERIA; MODELS, BIOLOGICAL; PHOTOSYNTHESIS; PLANT LEAVES; PLANT PROTEINS; TRANSCRIPTOME;

EID: 84956697628     PISSN: 13695266     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pbi.2015.12.011     Document Type: Review

References (43)

1. 4 photosynthesis. Plant Cell 2011, 23:3879-3892.
2. 4 species. Plant Physiol 2011, 155:142-156.
3. 4?. Plant Cell 2011, 23:2087-2105.
4. 4 Kranz anatomy. Plant J 2013, 75:656-670.
5. 3 patterns of photosynthetic gene expression in maize. EMBO J 1988, 7:3643-3651.
6. Liu W.Y., Chang Y.M., Chen S.C., Lu C.H., Wu Y.H., Lu M.Y., Chen D.R., Shih A.C., Sheue C.R., Huang H.C., et al. Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination. Proc Natl Acad Sci U S A 2013, 110:3979-3984.
7. Lim J., Jung J.W., Lim C.E., Lee M.H., Kim B.J., Kim M., Bruce W.B., Benfey P.N. Conservation and diversification of SCARECROW in maize. Plant Mol Biol 2005, 59:619-630.
8. Slewinski T.L., Anderson A.A., Zhang C., Turgeon R. Scarecrow plays a role in establishing Kranz anatomy in maize leaves. Plant Cell Physiol 2012, 53:2030-2037.
9. Chang Y.M., Liu W.Y., Shih A.C., Shen M.N., Lu C.H., Lu M.Y., Yang H.W., Wang T.Y., Chen S.C., Chen S.M., et al. Characterizing regulatory and functional differentiation between maize mesophyll and bundle sheath cells by transcriptomic analysis. Plant Physiol 2012, 160:165-177.
10. Petricka J.J., Clay N.K., Nelson T.M. Vein patterning screens and the defectively organized tributaries mutants in Arabidopsis thaliana. Plant J 2008, 56:251-263.
11. 4 photosynthesis. Front Plant Sci 2013, 4:212.
12. Cui H., Kong D., Liu X., Hao Y. SCARECROW SCR-LIKE 23 and SHORT-ROOT control bundle sheath cell fate and function in Arabidopsis thaliana. Plant J 2014, 78:319-327.
13. 3 photosynthesizing maize tissues. Genetics 2001, 159:787-797.
14. Hall L.N., Rossini L., Cribb L., Langdale J.A. GOLDEN 2 a novel transcriptional regulator of cellular differentiation in the maize leaf. Plant Cell 1998, 10:925-936.
15. 4 plant species. Plant Cell 2014, 26:3243-3260.
16. Ohashi-Ito K., Fukuda H. Transcriptional regulation of vascular cell fates. Curr Opin Plant Biol 2010, 13:670-676.
17. Fukuda H. Signals that control plant vascular cell differentiation. Nat Rev Mol Cell Biol 2004, 5:379-391.
18. 4 plants. Botany 2010, 88:775-786.
19. Zhao Y., Hull A.K., Gupta N.R., Goss K.A., Alonso J., Ecker J.R., Normanly J., Chory J., Celenza J.L. Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3. Genes Dev 2002, 16:3100-3112.
20. Sauer M., Balla J., Luschnig C., Wisniewska J., Reinohl V., Friml J., Benkova E. Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity. Genes Dev 2006, 20:2902-2911.
21. Scarpella E., Marcos D., Friml J., Berleth T. Control of leaf vascular patterning by polar auxin transport. Genes Dev 2006, 20:1015-1027.
22. Vieten A., Vanneste S., Wisniewska J., Benkova E., Benjamins R., Beeckman T., Luschnig C., Friml J. Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression. Development 2005, 132:4521-4531.
23. Wenzel C.L., Schuetz M., Yu Q., Mattsson J. Dynamics of MONOPTEROS and PIN-FORMED1 expression during leaf vein pattern formation in Arabidopsis thaliana. Plant J 2007, 49:387-398.
24. Baima S., Nobili F., Sessa G., Lucchetti S., Ruberti I., Morelli G. The expression of the Athb-8 homeobox gene is restricted to provascular cells in Arabidopsis thaliana. Development 1995, 121:4171-4182.
25. Donner T.J., Sherr I., Scarpella E. Regulation of preprocambial cell state acquisition by auxin signaling in Arabidopsis leaves. Development 2009, 136:3235-3246.
26. 4 species Cleome gynandra. J Exp Bot 2014, 65:3557-3566.
27. 4 in the genus Cleome (Cleomaceae). Ann Bot 2011, 107:269-283.
28. 4 genes in maize and its conservation in Sorghum and Setaria italica. Plant Physiol 2013, 162:456-469.
29. 4 photosynthesis. New Phytol 2011, 190:9-20.
30. Dombrecht B., Xue G.P., Sprague S.J., Kirkegaard J.A., Ross J.J., Reid J.B., Fitt G.P., Sewelam N., Schenk P.M., Manners J.M., et al. MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis. Plant Cell 2007, 19:2225-2245.
31. Yu C.P., Chen S.C., Chang Y.M., Liu W.Y., Lin H.H., Lin J.J., Chen H.J., Lu Y.J., Wu Y.H., Lu M.Y., et al. Transcriptome dynamics of developing maize leaves and genomewide prediction of cis elements and their cognate transcription factors. Proc Natl Acad Sci U S A 2015, 112:E2477-E2486.
32. 4 grasses. Plant Physiol 2014, 165:62-75.
33. Li P., Ponnala L., Gandotra N., Wang L., Si Y., Tausta S.L., Kebrom T.H., Provart N., Patel R., Myers C.R., et al. The developmental dynamics of the maize leaf transcriptome. Nat Genet 2010, 42:1060-1067.
34. 4-related processes. J Exp Bot 2014, 65:3543-3555.
35. 4 leaf development and differentiation defined by microscopy and quantitative proteomics in maize. Plant Cell 2010, 22:3509-3542.
36. Skirycz A., Reichelt M., Burow M., Birkemeyer C., Rolcik J., Kopka J., Zanor M.I., Gershenzon J., Strnad M., Szopa J., et al. DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis. Plant J 2006, 47:10-24.
37. Siegfried K.R., Eshed Y., Baum S.F., Otsuga D., Drews G.N., Bowman J.L. Members of the YABBY gene family specify abaxial cell fate in Arabidopsis. Development 1999, 126:4117-4128.
38. Waters M.T., Langdale J.A. The making of a chloroplast. EMBO J 2009, 28:2861-2873.
39. Wang J.W., Wang L.J., Mao Y.B., Cai W.J., Xue H.W., Chen X.Y. Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. Plant Cell 2005, 17:2204-2216.
40. Franco-Zorrilla J.M., Lopez-Vidriero I., Carrasco J.L., Godoy M., Vera P., Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A 2014, 111:2367-2372.
41. Sullivan A.M., Arsovski A.A., Lempe J., Bubb K.L., Weirauch M.T., Sabo P.J., Sandstrom R., Thurman R.E., Neph S., Reynolds A.P., et al. Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana. Cell Rep 2014, 8:2015-2030.
42. Lindemose S., Jensen M.K., Van de Velde J., O'Shea C., Heyndrickx K.S., Workman C.T., Vandepoele K., Skriver K., De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 2014, 42:7681-7693.
43. Weirauch M.T., Yang A., Albu M., Cote A.G., Montenegro-Montero A., Drewe P., Najafabadi H.S., Lambert S.A., Mann I., Cook K., et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell 2014, 158:1431-1443.