메뉴 건너뛰기




Volumn 7, Issue OUTBREAKS, 2015, Pages

Whole genome sequencing for the retrospective investigation of an outbreak of Salmonella Typhimurium DT 8

Author keywords

Duck eggs; Food borne infection; Outbreaks; Phylogeny; Salmonella

Indexed keywords

BACTERIOPHAGE; GENE MUTATION; GENETIC POLYMORPHISM; GENOME; HUMAN; HUMAN EXPERIMENT; MONOPHYLY; SALMONELLA ENTERICA SEROVAR TYPHIMURIUM; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84956652555     PISSN: None     EISSN: 21573999     Source Type: Journal    
DOI: 10.1371/currents.outbreaks.2c05a47d292f376afc5a6fcdd8a7a3b6     Document Type: Article
Times cited : (52)

References (17)
  • 1
    • 84927563234 scopus 로고    scopus 로고
    • 2014. Egg-borne infections of humans with salmonella: Not only an S. Enteritidis problem
    • Threlfall, EJ. et al; 2014. Egg-borne infections of humans with salmonella: not only an S. Enteritidis problem. World's Poultry Science Journal, Vol. 70:15-26
    • World's Poultry Science Journal , vol.70 , pp. 15-26
    • Threlfall, E.J.1
  • 2
    • 0036123730 scopus 로고    scopus 로고
    • Salmonella enterica serotype Typhimurium and its host-adapted variants
    • May, PubMed PMID:11953356, [PMC free article] [PubMed]
    • Rabsch W, Andrews HL, Kingsley RA, Prager R, Tschäpe H, Adams LG, Bäumler AJ. Salmonella enterica serotype Typhimurium and its host-adapted variants. Infect Immun. 2002 May;70(5):2249-55. PubMed PMID:11953356. [PMC free article] [PubMed]
    • (2002) Infect Immun. , vol.70 , Issue.5 , pp. 2249-2255
    • Rabsch, W.1    Andrews, H.L.2    Kingsley, R.A.3    Prager, R.4    Tschäpe, H.5    Adams, L.G.6    Bäumler, A.J.7
  • 6
    • 84887696007 scopus 로고    scopus 로고
    • Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm
    • Nov 19, PubMed PMID:24245509, [PMC free article] [PubMed]
    • Hawkey J, Edwards DJ, Dimovski K, Hiley L, Billman-Jacobe H, Hogg G, Holt KE. Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm. BMC Genomics. 2013 Nov 19;14:800. PubMed PMID:24245509. [PMC free article] [PubMed]
    • (2013) BMC Genomics. , vol.14
    • Hawkey, J.1    Edwards, D.J.2    Dimovski, K.3    Hiley, L.4    Billman-Jacobe, H.5    Hogg, G.6    Holt, K.E.7
  • 7
    • 84893131713 scopus 로고    scopus 로고
    • Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK
    • Dec, PubMed PMID:23425681, [PubMed]
    • McDonnell J, Dallman T, Atkin S, Turbitt DA, Connor TR, Grant KA, Thomson NR, Jenkins C. Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK. Epidemiol Infect. 2013 Dec;141(12):2568-75. PubMed PMID:23425681. [PubMed]
    • (2013) Epidemiol Infect. , vol.141 , Issue.12 , pp. 2568-2575
    • McDonnell, J.1    Dallman, T.2    Atkin, S.3    Turbitt, D.A.4    Connor, T.R.5    Grant, K.A.6    Thomson, N.R.7    Jenkins, C.8
  • 8
    • 57449095929 scopus 로고    scopus 로고
    • 9th edition. Paris: World Health Organization Collaborating Centre for Reference and Research on Salmonella, Pasteur Institute
    • Grimont PA, Weill FX. 2007. Antigenic formulae of the Salmonella serovars. 9th edition. Paris: World Health Organization Collaborating Centre for Reference and Research on Salmonella, Pasteur Institute
    • (2007) Antigenic formulae of the Salmonella serovars.
    • Grimont, P.A.1    Weill, F.X.2
  • 9
    • 0017614807 scopus 로고
    • Bacteriophage-typing designations of Salmonella typhimurium
    • Apr, PubMed PMID:321679, [PMC free article] [PubMed]
    • Anderson ES, Ward LR, Saxe MJ, de Sa JD. Bacteriophage-typing designations of Salmonella typhimurium. J Hyg (Lond). 1977 Apr;78(2):297-300. PubMed PMID:321679. [PMC free article] [PubMed]
    • (1977) J Hyg (Lond). , vol.78 , Issue.2 , pp. 297-300
    • Anderson, E.S.1    Ward, L.R.2    Saxe, M.J.3    de Sa, J.D.4
  • 10
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for Illumina sequence data
    • Aug 1, PubMed PMID:24695404, [PMC free article] [PubMed]
    • Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014 Aug 1;30(15):2114-20. PubMed PMID:24695404. [PMC free article] [PubMed]
    • (2014) Bioinformatics. , vol.30 , Issue.15 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 11
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Jul 15, PubMed PMID:19451168, [PMC free article] [PubMed]
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009 Jul 15;25(14):1754-60. PubMed PMID:19451168. [PMC free article] [PubMed]
    • (2009) Bioinformatics. , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 13
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2--approximately maximum-likelihood trees for large alignments
    • Mar 10, PubMed PMID:20224823, [PMC free article] [PubMed]
    • Price MN, Dehal PS, Arkin AP. FastTree 2--approximately maximum-likelihood trees for large alignments. PLoS One. 2010 Mar 10;5(3):e9490. PubMed PMID:20224823. [PMC free article] [PubMed]
    • (2010) PLoS One. , vol.5 , Issue.3
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 14
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Oct, PubMed PMID:21546353, [PMC free article] [PubMed]
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011 Oct;28(10):2731-9. PubMed PMID:21546353. [PMC free article] [PubMed]
    • (2011) Mol Biol Evol. , vol.28 , Issue.10 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 15
    • 84895096959 scopus 로고    scopus 로고
    • Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica
    • PubMed PMID:24505344[PMC free article] [PubMed]
    • Leekitcharoenphon P, Nielsen EM, Kaas RS, Lund O, Aarestrup FM. Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica. PLoS One. 2014;9(2):e87991. PubMed PMID:24505344. [PMC free article] [PubMed]
    • (2014) PLoS One. , vol.9 , Issue.2
    • Leekitcharoenphon, P.1    Nielsen, E.M.2    Kaas, R.S.3    Lund, O.4    Aarestrup, F.M.5
  • 17
    • 84928040686 scopus 로고    scopus 로고
    • SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
    • PubMed PMID:25422674[PMC free article] [PubMed]
    • Inouye M, Dashnow H, Raven LA, Schultz MB, Pope BJ, Tomita T, Zobel J, Holt KE. SRST2: Rapid genomic surveillance for public health and hospital microbiology labs. Genome Med. 2014;6(11):90. PubMed PMID:25422674. [PMC free article] [PubMed]
    • (2014) Genome Med. , vol.6 , Issue.11
    • Inouye, M.1    Dashnow, H.2    Raven, L.A.3    Schultz, M.B.4    Pope, B.J.5    Tomita, T.6    Zobel, J.7    Holt, K.E.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.