-
1
-
-
84927563234
-
2014. Egg-borne infections of humans with salmonella: Not only an S. Enteritidis problem
-
Threlfall, EJ. et al; 2014. Egg-borne infections of humans with salmonella: not only an S. Enteritidis problem. World's Poultry Science Journal, Vol. 70:15-26
-
World's Poultry Science Journal
, vol.70
, pp. 15-26
-
-
Threlfall, E.J.1
-
2
-
-
0036123730
-
Salmonella enterica serotype Typhimurium and its host-adapted variants
-
May, PubMed PMID:11953356, [PMC free article] [PubMed]
-
Rabsch W, Andrews HL, Kingsley RA, Prager R, Tschäpe H, Adams LG, Bäumler AJ. Salmonella enterica serotype Typhimurium and its host-adapted variants. Infect Immun. 2002 May;70(5):2249-55. PubMed PMID:11953356. [PMC free article] [PubMed]
-
(2002)
Infect Immun.
, vol.70
, Issue.5
, pp. 2249-2255
-
-
Rabsch, W.1
Andrews, H.L.2
Kingsley, R.A.3
Prager, R.4
Tschäpe, H.5
Adams, L.G.6
Bäumler, A.J.7
-
4
-
-
84876491015
-
Investigation and management of an outbreak of Salmonella Typhimurium DT8 associated with duck eggs, Ireland 2009 to 2011
-
Apr 18, PubMed PMID:23611032, [PubMed]
-
Garvey P, McKeown P, Kelly P, Cormican M, Anderson W, Flack A, Barron S, De Lappe N, Buckley J, Cosgrove C, Molloy D, O' Connor J, O' Sullivan P, Matthews J, Ward M, Breslin A, O' Sullivan MB, Kelleher K, McNamara A, Foley-Nolan C, Pelly H, Cloak F. Investigation and management of an outbreak of Salmonella Typhimurium DT8 associated with duck eggs, Ireland 2009 to 2011. Euro Surveill. 2013 Apr 18;18(16):20454. PubMed PMID:23611032. [PubMed]
-
(2013)
Euro Surveill.
, vol.18
, Issue.16
-
-
Garvey, P.1
McKeown, P.2
Kelly, P.3
Cormican, M.4
Anderson, W.5
Flack, A.6
Barron, S.7
De Lappe, N.8
Buckley, J.9
Cosgrove, C.10
Molloy, D.11
O'Connor, J.12
O'Sullivan, P.13
Matthews, J.14
Ward, M.15
Breslin, A.16
O'Sullivan, M.B.17
Kelleher, K.18
McNamara, A.19
Foley-Nolan, C.20
Pelly, H.21
Cloak, F.22
more..
-
5
-
-
79952432498
-
Identification of a salmonellosis outbreak by means of molecular sequencing
-
Mar 10, PubMed PMID:21345093, [PubMed]
-
Lienau EK, Strain E, Wang C, Zheng J, Ottesen AR, Keys CE, Hammack TS, Musser SM, Brown EW, Allard MW, Cao G, Meng J, Stones R. Identification of a salmonellosis outbreak by means of molecular sequencing. N Engl J Med. 2011 Mar 10;364(10):981-2. PubMed PMID:21345093. [PubMed]
-
(2011)
N Engl J Med.
, vol.364
, Issue.10
, pp. 981-982
-
-
Lienau, E.K.1
Strain, E.2
Wang, C.3
Zheng, J.4
Ottesen, A.R.5
Keys, C.E.6
Hammack, T.S.7
Musser, S.M.8
Brown, E.W.9
Allard, M.W.10
Cao, G.11
Meng, J.12
Stones, R.13
-
6
-
-
84887696007
-
Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm
-
Nov 19, PubMed PMID:24245509, [PMC free article] [PubMed]
-
Hawkey J, Edwards DJ, Dimovski K, Hiley L, Billman-Jacobe H, Hogg G, Holt KE. Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm. BMC Genomics. 2013 Nov 19;14:800. PubMed PMID:24245509. [PMC free article] [PubMed]
-
(2013)
BMC Genomics.
, vol.14
-
-
Hawkey, J.1
Edwards, D.J.2
Dimovski, K.3
Hiley, L.4
Billman-Jacobe, H.5
Hogg, G.6
Holt, K.E.7
-
7
-
-
84893131713
-
Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK
-
Dec, PubMed PMID:23425681, [PubMed]
-
McDonnell J, Dallman T, Atkin S, Turbitt DA, Connor TR, Grant KA, Thomson NR, Jenkins C. Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK. Epidemiol Infect. 2013 Dec;141(12):2568-75. PubMed PMID:23425681. [PubMed]
-
(2013)
Epidemiol Infect.
, vol.141
, Issue.12
, pp. 2568-2575
-
-
McDonnell, J.1
Dallman, T.2
Atkin, S.3
Turbitt, D.A.4
Connor, T.R.5
Grant, K.A.6
Thomson, N.R.7
Jenkins, C.8
-
8
-
-
57449095929
-
-
9th edition. Paris: World Health Organization Collaborating Centre for Reference and Research on Salmonella, Pasteur Institute
-
Grimont PA, Weill FX. 2007. Antigenic formulae of the Salmonella serovars. 9th edition. Paris: World Health Organization Collaborating Centre for Reference and Research on Salmonella, Pasteur Institute
-
(2007)
Antigenic formulae of the Salmonella serovars.
-
-
Grimont, P.A.1
Weill, F.X.2
-
9
-
-
0017614807
-
Bacteriophage-typing designations of Salmonella typhimurium
-
Apr, PubMed PMID:321679, [PMC free article] [PubMed]
-
Anderson ES, Ward LR, Saxe MJ, de Sa JD. Bacteriophage-typing designations of Salmonella typhimurium. J Hyg (Lond). 1977 Apr;78(2):297-300. PubMed PMID:321679. [PMC free article] [PubMed]
-
(1977)
J Hyg (Lond).
, vol.78
, Issue.2
, pp. 297-300
-
-
Anderson, E.S.1
Ward, L.R.2
Saxe, M.J.3
de Sa, J.D.4
-
10
-
-
84905049901
-
Trimmomatic: A flexible trimmer for Illumina sequence data
-
Aug 1, PubMed PMID:24695404, [PMC free article] [PubMed]
-
Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014 Aug 1;30(15):2114-20. PubMed PMID:24695404. [PMC free article] [PubMed]
-
(2014)
Bioinformatics.
, vol.30
, Issue.15
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
11
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Jul 15, PubMed PMID:19451168, [PMC free article] [PubMed]
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009 Jul 15;25(14):1754-60. PubMed PMID:19451168. [PMC free article] [PubMed]
-
(2009)
Bioinformatics.
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
12
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
May, PubMed PMID:21478889, [PMC free article] [PubMed]
-
DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, Philippakis AA, del Angel G, Rivas MA, Hanna M, McKenna A, Fennell TJ, Kernytsky AM, Sivachenko AY, Cibulskis K, Gabriel SB, Altshuler D, Daly MJ. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 2011 May;43(5):491-8. PubMed PMID:21478889. [PMC free article] [PubMed]
-
(2011)
Nat Genet.
, vol.43
, Issue.5
, pp. 491-498
-
-
DePristo, M.A.1
Banks, E.2
Poplin, R.3
Garimella, K.V.4
Maguire, J.R.5
Hartl, C.6
Philippakis, A.A.7
del Angel, G.8
Rivas, M.A.9
Hanna, M.10
McKenna, A.11
Fennell, T.J.12
Kernytsky, A.M.13
Sivachenko, A.Y.14
Cibulskis, K.15
Gabriel, S.B.16
Altshuler, D.17
Daly, M.J.18
-
13
-
-
77949718257
-
FastTree 2--approximately maximum-likelihood trees for large alignments
-
Mar 10, PubMed PMID:20224823, [PMC free article] [PubMed]
-
Price MN, Dehal PS, Arkin AP. FastTree 2--approximately maximum-likelihood trees for large alignments. PLoS One. 2010 Mar 10;5(3):e9490. PubMed PMID:20224823. [PMC free article] [PubMed]
-
(2010)
PLoS One.
, vol.5
, Issue.3
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
14
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Oct, PubMed PMID:21546353, [PMC free article] [PubMed]
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011 Oct;28(10):2731-9. PubMed PMID:21546353. [PMC free article] [PubMed]
-
(2011)
Mol Biol Evol.
, vol.28
, Issue.10
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
15
-
-
84895096959
-
Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica
-
PubMed PMID:24505344[PMC free article] [PubMed]
-
Leekitcharoenphon P, Nielsen EM, Kaas RS, Lund O, Aarestrup FM. Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica. PLoS One. 2014;9(2):e87991. PubMed PMID:24505344. [PMC free article] [PubMed]
-
(2014)
PLoS One.
, vol.9
, Issue.2
-
-
Leekitcharoenphon, P.1
Nielsen, E.M.2
Kaas, R.S.3
Lund, O.4
Aarestrup, F.M.5
-
17
-
-
84928040686
-
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
-
PubMed PMID:25422674[PMC free article] [PubMed]
-
Inouye M, Dashnow H, Raven LA, Schultz MB, Pope BJ, Tomita T, Zobel J, Holt KE. SRST2: Rapid genomic surveillance for public health and hospital microbiology labs. Genome Med. 2014;6(11):90. PubMed PMID:25422674. [PMC free article] [PubMed]
-
(2014)
Genome Med.
, vol.6
, Issue.11
-
-
Inouye, M.1
Dashnow, H.2
Raven, L.A.3
Schultz, M.B.4
Pope, B.J.5
Tomita, T.6
Zobel, J.7
Holt, K.E.8
|