Description of acinetobacter populi sp. Nov. isolated from symptomatic bark of populus × euramericana canker

International Journal of Systematic and Evolutionary Microbiology

Volumn 65, Issue 12, 2015, Pages 4461-4468

  Li, Yong ^a,b   Chang, Jupu ^c   Guo, Li Min ^c   Wang, Hai Ming ^d   Xie, Shou Jiang ^c   Piao, Chun Gen ^b   He, Wei ^a  

^a BEIJING FORESTRY UNIVERSITY   (China)

^b RESEARCH INSTITUTE OF FORESTRY   (China)

^c Puyang Research Institute of Forestry   (China)

^d Heze Forest Protection Station   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; FATTY ACID; RNA 16S;

ACINETOBACTER; BACTERIAL GENE; BACTERIUM IDENTIFICATION; BARK; CHEMISTRY; CHINA; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; POPULUS;

ACINETOBACTER; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; DNA, BACTERIAL; FATTY ACIDS; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PLANT BARK; POPULUS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

EID: 84955478861     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijsem.0.000599     Document Type: Article

References (19)

1. Baker, G. C., Smith, J. J. & Cowan, D. A. (2003). Review and re-analysis of domain-specific 16S primers. J Microbiol Methods 55, 541-555.
2. Cleenwerck, I., Vandemeulebroecke, K., Janssens, D. & Swings, J. (2002). Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov. Int J Syst Evol Microbiol 52, 1551-1558.
3. Cruze, J. A., Singer, J. T. & Finnerty, W. R. (1979). Conditions for quantitative transformation in Acinetobacter calcoaceticus. Curr Microbiol 3, 129-132.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
5. Krizova, L., Maixnerova, M., Sedo, O. & Nemec, A. (2014). Acinetobacter bohemicus sp. nov. widespread in natural soil and water ecosystems in the Czech Republic. Syst Appl Microbiol 37, 467-473.
6. Krizova, L., McGinnis, J., Maixnerova, M., Nemec, M., Poirel, L., Mingle, L., Sedo, O., Wolfgang, W. & Nemec, A. (2015). Acinetobacter variabilis sp. nov. (formerly DNA group 15 sensu Tjernberg & Ursing), isolated from humans and animals. Int J Syst Evol Microbiol 65, 1395.
7. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
8. Li, Y., Piao, C. G., Ma, Y. C., He, W., Wang, H. M., Chang, J. P., Guo, L. M., Wang, X. Z., Xie, S. J. & Guo, M. W. (2013). Acinetobacter puyangensis sp. nov., isolated from the healthy and diseased part of Populus 6 euramericana canker bark. Int J Syst Evol Microbiol 63, 2963-2969.
9. Li, Y., He, W., Wang, T., Piao, C. G., Guo, L. M., Chang, J. P., Guo, M. W. & Xie, S. J. (2014a). Acinetobacter qingfengensis sp. nov., isolated from canker bark of Populus 6 euramericana. Int J Syst Evol Microbiol 64, 1043-1050.
10. Li, Y., He, W., Ren, F. J., Guo, L. M., Chang, J. P., Cleenwerck, I., Ma, Y. C. & Wang, H. M. (2014b). A canker disease of Populus 6 euramericana in China caused by Lonsdalea quercina subsp. populi. Plant Dis 98, 368-378.
11. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
12. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
13. Nemec, A., Musílek, M., Maixnerová, M., De Baere, T., van der Reijden, T. J. K., Vaneechoutte, M. & Dijkshoorn, L. (2009). Acinetobacter beijerinckii sp. nov. and Acinetobacter gyllenbergii sp. nov., haemolytic organisms isolated from humans. Int J Syst Evol Microbiol 59, 118-124.
14. Nemec, A., Krizova, L., Maixnerova, M., van der Reijden, T. J., Deschaght, P., Passet, V., Vaneechoutte, M., Brisse, S. & Dijkshoorn, L. (2011). Genotypic and phenotypic characterization of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex with the proposal of Acinetobacter pittii sp. nov. (formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis sp. nov. (formerly Acinetobacter genomic species 13TU). Res Microbiol 162, 393-404.
15. Smet, A., Cools, P., Krizova, L., Maixnerova, M., Sedo, O., Haesebrouck, F., Kempf, M., Nemec, A. & Vaneechoutte, M. (2014). Acinetobacter gandensis sp. nov. isolated from horse and cattle. Int J Syst Evol Microbiol 64, 4007-4015.
16. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
17. Touchon, M., Cury, J., Yoon, E. J., Krizova, L., Cerqueira, G. C., Murphy, C., Feldgarden, M., Wortman, J., Clermont, D. & other authors (2014). The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences. Genome Biol Evol 6, 2866-2882.
18. Wayne, L. G., Brenner, D. J., Colwell, R. R. & other authors (1987). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 297, 463-464.
19. Yamamoto, S. & Harayama, S. (1995). PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl Environ Microbiol 61, 1104-1109.