Acinetobacter bohemicus sp. nov. widespread in natural soil and water ecosystems in the Czech Republic

Systematic and Applied Microbiology

Volumn 37, Issue 7, 2014, Pages 467-473

  Krizova, Lenka ^a   Maixnerova, Martina ^a   Sedo, Ondrej ^b   Nemec, Alexandr ^a  

^a NATIONAL INSTITUTE OF PUBLIC HEALTH   (Czech Republic)

^b MASARYK UNIVERSITY   (Czech Republic)

Author keywords

16S rRNA gene; ANI; Carbon source assimilation; GyrB; MALDI TOF MS; RpoB

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING) B; HISTIDINE; RNA 16S; RNA POLYMERASE BETA SUBUNIT; WATER; BACTERIAL DNA; DNA DIRECTED RNA POLYMERASE; DNA TOPOISOMERASE (ATP HYDROLYSING); RIBOSOME DNA;

ACINETOBACTER; ACINETOBACTER BAUMANNII; ACINETOBACTER BOHEMICUS; ACINETOBACTER HAEMOLYTICUS; ACINETOBACTER HARBINENSIS; ACINETOBACTER JOHNSONII; ACINETOBACTER JUNII; ACINETOBACTER LWOFFII; AMINO ACID SEQUENCE; ANAEROBIC GROWTH; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATION; CZECH REPUBLIC; ECOSYSTEM; GENE SEQUENCE; HOMOLOGOUS RECOMBINATION; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; SOIL; TAXONOMIC RANK; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MASS SPECTROMETRY; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; TEMPERATURE;

ACINETOBACTER; BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; CZECH REPUBLIC; DNA GYRASE; DNA, BACTERIAL; DNA, RIBOSOMAL; DNA-DIRECTED RNA POLYMERASES; ECOSYSTEM; HISTIDINE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TEMPERATURE; WATER MICROBIOLOGY;

EID: 84908046717     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2014.07.001     Document Type: Article

References (18)

1. Baumann P., Doudoroff M., Stanier R.Y. A study of the Moraxella group. II. Oxidative-negative species (genus Acinetobacter). J. Bacteriol. 1968, 95:1520-1541.
2. Dijkshoorn L., Nemec A., Seifert H. An increasing threat in the hospital: multidrug resistant Acinetobacter baumannii. Nat. Rev. Microbiol. 2007, 5:939-951.
3. Freiwald A., Sauer S. Phylogenetic classification and identification of bacteria by mass spectrometry. Nat. Protoc. 2009, 4:732-742.
4. Juni E. Interspecies transformation of Acinetobacter: genetic evidence for a ubiquitous genus. J. Bacteriol. 1972, 112:917-931.
5. Karah N., Haldorsen B., Hegstad K., Simonsen G.S., Sundsfjord A., Samuelsen Ø. Species identification and molecular characterization of Acinetobacter spp. blood culture isolates from Norway. J. Antimicrob. Chemother. 2011, 66:738-744. Norwegian Study Group of Acinetobacter.
6. Konstantinidis K.T., Tiedje J.M. Genomic insights that advance the species definition for prokaryotes. Proc. Natl. Acad. Sci. U. S. A. 2005, 102:2567-2572.
7. La Scola B., Gundi V.A., Khamis A., Raoult D. Sequencing of the rpoB gene and flanking spacers for molecular identification of Acinetobacter species. J. Clin. Microbiol. 2006, 44:827-832.
8. Nemec A., De Baere T., Tjernberg I., Vaneechoutte M., van der Reijden T.J.K., Dijkshoorn L. Acinetobacter ursingii sp. nov. and Acinetobacter schindleri sp. nov., isolated from human clinical specimens. Int. J. Syst. Evol. Microbiol. 2001, 51:1891-1899.
9. Nemec A., Dijkshoorn L., Ježek P. Recognition of two novel phenons of the genus Acinetobacter among non-glucose-acidifying isolates from human specimens. J. Clin. Microbiol. 2000, 38:3937-3941.
10. Nemec A., Krizova L., Maixnerova M., van der Reijden T.J.K., Deschaght P., Passet V., Vaneechoutte M., Brisse S., Dijkshoorn L. Genotypic and phenotypic characterization of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex with the proposal of Acinetobacter pittii sp. nov. (formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis sp. nov. (formerly Acinetobacter genomic species 13TU). Res. Microbiol. 2011, 162:393-404.
11. Nemec A., Musílek M., Maixnerová M., De Baere T., van der Reijden T.J.K., Vaneechoutte M., Dijkshoorn L. Acinetobacter beijerinckii sp. nov. and Acinetobacter gyllenbergii sp. nov., haemolytic organisms isolated from humans. Int. J. Syst. Evol. Microbiol. 2009, 59:118-124.
12. Nemec A., Musílek M., Sedo O., De Baere T., Maixnerová M., van der Reijden T.J., Zdráhal Z., Vaneechoutte M., Dijkshoorn L. Acinetobacter bereziniae sp. nov. and Acinetobacter guillouiae sp. nov., to accommodate Acinetobacter genomic species 10 and 11, respectively. Int. J. Syst. Evol. Microbiol. 2010, 60:896-903.
13. Perichon B., Goussard S., Walewski V., Krizova L., Cerqueira G., Murphy C., Feldgarden M., Wortman J., Clermont D., Nemec A., Courvalin P. Identification of fifty class D β-lactamases and of sixty-five Acinetobacter-derived cephalosporinases in Acinetobacter spp. Antimicrob. Agents Chemother. 2014, 58:936-949.
14. Richter M., Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:19126-19131.
15. Turton J.F., Shah J., Ozongwu C., Pike R. Incidence of Acinetobacter species other than A. baumannii among clinical isolates of Acinetobacter: evidence for emerging species. J. Clin. Microbiol. 2010, 48:1445-1449.
16. van den Broek P.J., van der Reijden T.J., van Strijen E., Helmig-Schurter A.V., Bernards A.T., Dijkshoorn L. Endemic and epidemic acinetobacter species in a university hospital: an 8-year survey. J. Clin. Microbiol. 2009, 47:3593-3599.
17. Vaneechoutte M., De Baere T., Nemec A., Musílek M., van der Reijden T.J.K., Dijkshoorn L. Reclassification of Acinetobacter grimontii Carr et al. 2003 as a later synonym of Acinetobacter junii Bouvet and Grimont 1986. Int. J. Syst. Evol. Microbiol. 2008, 58:937-940.
18. Yamamoto S., Bouvet P.J., Harayama S. Phylogenetic structures of the genus Acinetobacter based on gyrB sequences: comparison with the grouping by DNA-DNA hybridization. Int. J. Syst. Bacteriol. 1999, 49:87-95.