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Volumn 84, Issue 4, 2015, Pages 682-693

Natural variation in the C-repeat binding factor cold response pathway correlates with local adaptation of Arabidopsis ecotypes

Author keywords

Arabidopsis thaliana; C repeat binding factor regulatory pathway; freezing tolerance; natural variation

Indexed keywords

BINDING SITES; BINS; ENCODING (SYMBOLS); FITS AND TOLERANCES; FREEZING; GENES; GEOGRAPHICAL REGIONS; PLANTS (BOTANY); PROTEINS; TEMPERATURE; TRANSCRIPTION;

EID: 84955198268     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/tpj.13027     Document Type: Article
Times cited : (85)

References (41)
  • 1
    • 84860494028 scopus 로고    scopus 로고
    • Reciprocal transplants demonstrate strong adaptive differentiation of the model organism Arabidopsis thaliana in its native range
    • Ågren, J., and, Schemske, D.W., (2012) Reciprocal transplants demonstrate strong adaptive differentiation of the model organism Arabidopsis thaliana in its native range. New Phytol. 194, 1112-1122.
    • (2012) New Phytol. , vol.194 , pp. 1112-1122
    • Ågren, J.1    Schemske, D.W.2
  • 2
    • 84891369649 scopus 로고    scopus 로고
    • Genetic mapping of adaptation reveals fitness tradeoffs in Arabidopsis thaliana
    • Ågren, J., Oakley, C.G., McKay, J.K., Lovell, J.T., and, Schemske, D.W., (2013) Genetic mapping of adaptation reveals fitness tradeoffs in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA, 110, 21077-21082.
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 21077-21082
    • Ågren, J.1    Oakley, C.G.2    McKay, J.K.3    Lovell, J.T.4    Schemske, D.W.5
  • 3
    • 33644833484 scopus 로고    scopus 로고
    • Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis
    • Alonso-Blanco, C., Gomez-Mena, C., Llorente, F., Koornneef, M., Salinas, J., and, Martinez-Zapater, J.M., (2005) Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis. Plant Physiol. 139, 1304-1312.
    • (2005) Plant Physiol. , vol.139 , pp. 1304-1312
    • Alonso-Blanco, C.1    Gomez-Mena, C.2    Llorente, F.3    Koornneef, M.4    Salinas, J.5    Martinez-Zapater, J.M.6
  • 4
    • 0028385745 scopus 로고
    • The 5′-Region of Arabidopsis thaliana Cor15a has cis-acting elements that confer cold-regulated, drought-regulated and ABA-regulated gene expression
    • Baker, S.S., Wilhelm, K.S., and, Thomashow, M.F., (1994) The 5′-Region of Arabidopsis thaliana Cor15a has cis-acting elements that confer cold-regulated, drought-regulated and ABA-regulated gene expression. Plant Mol. Biol. 24, 701-713.
    • (1994) Plant Mol. Biol. , vol.24 , pp. 701-713
    • Baker, S.S.1    Wilhelm, K.S.2    Thomashow, M.F.3
  • 5
    • 6344245668 scopus 로고    scopus 로고
    • A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis
    • Cook, D., Fowler, S., Fiehn, O., and, Thomashow, M.F., (2004) A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis. Proc. Natl Acad. Sci. USA, 101, 15243-15248.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 15243-15248
    • Cook, D.1    Fowler, S.2    Fiehn, O.3    Thomashow, M.F.4
  • 6
    • 66449131193 scopus 로고    scopus 로고
    • Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance
    • Doherty, C.J., Van Buskirk, H.A., Myers, S.J., and, Thomashow, M.F., (2009) Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell, 21, 972-984.
    • (2009) Plant Cell , vol.21 , pp. 972-984
    • Doherty, C.J.1    Van Buskirk, H.A.2    Myers, S.J.3    Thomashow, M.F.4
  • 7
    • 79955551575 scopus 로고    scopus 로고
    • CIRCADIAN CLOCK-ASSOCIATED 1 and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis
    • Dong, M.A., Farre, E.M., and, Thomashow, M.F., (2011) CIRCADIAN CLOCK-ASSOCIATED 1 and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis. Proc. Natl Acad. Sci. USA, 108, 7241-7246.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 7241-7246
    • Dong, M.A.1    Farre, E.M.2    Thomashow, M.F.3
  • 9
    • 0036671216 scopus 로고    scopus 로고
    • Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway
    • Fowler, S., and, Thomashow, M.F., (2002) Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell, 14, 1675-1690.
    • (2002) Plant Cell , vol.14 , pp. 1675-1690
    • Fowler, S.1    Thomashow, M.F.2
  • 10
    • 78149497123 scopus 로고    scopus 로고
    • Natural variation in the freezing tolerance of Arabidopsis thaliana: Effects of RNAi-induced CBF depletion and QTL localisation vary among accessions
    • Gery, C., Zuther, E., Schulz, E., Legoupi, J., Chauveau, A., McKhann, H., Hincha, D.K., and, Teoule, E., (2011) Natural variation in the freezing tolerance of Arabidopsis thaliana: effects of RNAi-induced CBF depletion and QTL localisation vary among accessions. Plant Sci. 180, 12-23.
    • (2011) Plant Sci. , vol.180 , pp. 12-23
    • Gery, C.1    Zuther, E.2    Schulz, E.3    Legoupi, J.4    Chauveau, A.5    McKhann, H.6    Hincha, D.K.7    Teoule, E.8
  • 11
    • 0032213180 scopus 로고    scopus 로고
    • Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression
    • Gilmour, S.J., Zarka, D.G., Stockinger, E.J., Salazar, M.P., Houghton, J.M., and, Thomashow, M.F., (1998) Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. Plant J. 16, 433-442.
    • (1998) Plant J. , vol.16 , pp. 433-442
    • Gilmour, S.J.1    Zarka, D.G.2    Stockinger, E.J.3    Salazar, M.P.4    Houghton, J.M.5    Thomashow, M.F.6
  • 12
    • 0034527513 scopus 로고    scopus 로고
    • Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation
    • Gilmour, S.J., Sebolt, A.M., Salazar, M.P., Everard, J.D., and, Thomashow, M.F., (2000) Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation. Plant Physiol. 124, 1854-1865.
    • (2000) Plant Physiol. , vol.124 , pp. 1854-1865
    • Gilmour, S.J.1    Sebolt, A.M.2    Salazar, M.P.3    Everard, J.D.4    Thomashow, M.F.5
  • 13
    • 6344241962 scopus 로고    scopus 로고
    • Arabidopsis transcriptional activators CBF1, CBF2, and CBF3 have matching functional activities
    • Gilmour, S.J., Fowler, S.G., and, Thomashow, M.F., (2004) Arabidopsis transcriptional activators CBF1, CBF2, and CBF3 have matching functional activities. Plant Mol. Biol. 54, 767-781.
    • (2004) Plant Mol. Biol. , vol.54 , pp. 767-781
    • Gilmour, S.J.1    Fowler, S.G.2    Thomashow, M.F.3
  • 15
    • 0036175529 scopus 로고    scopus 로고
    • Biogeography of Arabidopsis thaliana (L.) Heynh. (Brassicaceae)
    • Hoffmann, M.H., (2002) Biogeography of Arabidopsis thaliana (L.) Heynh. (Brassicaceae). J. Biogeogr. 29, 125-134.
    • (2002) J. Biogeogr. , vol.29 , pp. 125-134
    • Hoffmann, M.H.1
  • 17
    • 0032478635 scopus 로고    scopus 로고
    • Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance
    • Jaglo-Ottosen, K.R., Gilmour, S.J., Zarka, D.G., Schabenberger, O., and, Thomashow, M.F., (1998) Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance. Science, 280, 104-106.
    • (1998) Science , vol.280 , pp. 104-106
    • Jaglo-Ottosen, K.R.1    Gilmour, S.J.2    Zarka, D.G.3    Schabenberger, O.4    Thomashow, M.F.5
  • 18
    • 84881226945 scopus 로고    scopus 로고
    • Natural variation of C-repeat-binding factor (CBFs) genes is a major cause of divergence in freezing tolerance among a group of Arabidopsis thaliana populations along the Yangtze River in China
    • Kang, J., Zhang, H., Sun, T., Shi, Y., Wang, J., Zhang, B., Wang, Z., Zhou, Y., and, Gu, H., (2013) Natural variation of C-repeat-binding factor (CBFs) genes is a major cause of divergence in freezing tolerance among a group of Arabidopsis thaliana populations along the Yangtze River in China. New Phytol. 199, 1069-1080.
    • (2013) New Phytol. , vol.199 , pp. 1069-1080
    • Kang, J.1    Zhang, H.2    Sun, T.3    Shi, Y.4    Wang, J.5    Zhang, B.6    Wang, Z.7    Zhou, Y.8    Gu, H.9
  • 19
    • 34250177304 scopus 로고    scopus 로고
    • Transcript and metabolite profiling during cold acclimation of Arabidopsis reveals an intricate relationship of cold-regulated gene expression with modifications in metabolite content
    • Kaplan, F., Kopka, J., Sung, D.Y., Zhao, W., Popp, M., Porat, R., and, Guy, C.L., (2007) Transcript and metabolite profiling during cold acclimation of Arabidopsis reveals an intricate relationship of cold-regulated gene expression with modifications in metabolite content. Plant J. 50, 967-981.
    • (2007) Plant J. , vol.50 , pp. 967-981
    • Kaplan, F.1    Kopka, J.2    Sung, D.Y.3    Zhao, W.4    Popp, M.5    Porat, R.6    Guy, C.L.7
  • 20
    • 84864548643 scopus 로고    scopus 로고
    • Low-temperature perception leading to gene expression and cold tolerance in higher plants
    • Knight, M.R., and, Knight, H., (2012) Low-temperature perception leading to gene expression and cold tolerance in higher plants. New Phytol. 195, 737-751.
    • (2012) New Phytol. , vol.195 , pp. 737-751
    • Knight, M.R.1    Knight, H.2
  • 21
    • 77950398595 scopus 로고    scopus 로고
    • The development of Arabidopsis as a model plant
    • Koornneef, M., and, Meinke, D., (2010) The development of Arabidopsis as a model plant. Plant J. 61, 909-921.
    • (2010) Plant J. , vol.61 , pp. 909-921
    • Koornneef, M.1    Meinke, D.2
  • 23
    • 52149093671 scopus 로고    scopus 로고
    • Natural genetic variation in acclimation capacity at sub-zero temperatures after cold acclimation at 4 degrees C in different Arabidopsis thaliana accessions
    • Le, M.Q., Engelsberger, W.R., and, Hincha, D.K., (2008) Natural genetic variation in acclimation capacity at sub-zero temperatures after cold acclimation at 4 degrees C in different Arabidopsis thaliana accessions. Cryobiology, 57, 104-112.
    • (2008) Cryobiology , vol.57 , pp. 104-112
    • Le, M.Q.1    Engelsberger, W.R.2    Hincha, D.K.3
  • 24
    • 84866286106 scopus 로고    scopus 로고
    • Photoperiodic regulation of the C-repeat binding factor (CBF) cold acclimation pathway and freezing tolerance in Arabidopsis thaliana
    • Lee, C.M., and, Thomashow, M.F., (2012) Photoperiodic regulation of the C-repeat binding factor (CBF) cold acclimation pathway and freezing tolerance in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA, 109, 15054-15059.
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 15054-15059
    • Lee, C.M.1    Thomashow, M.F.2
  • 25
    • 0032144961 scopus 로고    scopus 로고
    • Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis
    • Liu, Q., Kasuga, M., Sakuma, Y., Abe, H., Miura, S., Yamaguchi-Shinozaki, K., and, Shinozaki, K., (1998) Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell, 10, 1391-1406.
    • (1998) Plant Cell , vol.10 , pp. 1391-1406
    • Liu, Q.1    Kasuga, M.2    Sakuma, Y.3    Abe, H.4    Miura, S.5    Yamaguchi-Shinozaki, K.6    Shinozaki, K.7
  • 26
    • 2942733588 scopus 로고    scopus 로고
    • Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems
    • Maruyama, K., Sakuma, Y., Kasuga, M., Ito, Y., Seki, M., Goda, H., Shimada, Y., Yoshida, S., Shinozaki, K., and, Yamaguchi-Shinozaki, K., (2004) Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Plant J. 38, 982-993.
    • (2004) Plant J. , vol.38 , pp. 982-993
    • Maruyama, K.1    Sakuma, Y.2    Kasuga, M.3    Ito, Y.4    Seki, M.5    Goda, H.6    Shimada, Y.7    Yoshida, S.8    Shinozaki, K.9    Yamaguchi-Shinozaki, K.10
  • 27
    • 55349132069 scopus 로고    scopus 로고
    • Natural variation in CBF gene sequence, gene expression and freezing tolerance in the Versailles core collection of Arabidopsis thaliana
    • McKhann, H.I., Gery, C., Bérard, A., Lévêque, S., Zuther, E., Hincha, D.K., De Mita, S., Brunel, D., and, Téoulé, E., (2008) Natural variation in CBF gene sequence, gene expression and freezing tolerance in the Versailles core collection of Arabidopsis thaliana. BMC Plant Biol. 8, 105.
    • (2008) BMC Plant Biol. , vol.8 , pp. 105
    • McKhann, H.I.1    Gery, C.2    Bérard, A.3    Lévêque, S.4    Zuther, E.5    Hincha, D.K.6    De Mita, S.7    Brunel, D.8    Téoulé, E.9
  • 28
    • 0033080470 scopus 로고    scopus 로고
    • The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression is regulated by low temperature but not by abscisic acid or dehydration
    • Medina, J., Bargues, M., Terol, J., Pérez-Alonso, M., and, Salinas, J., (1999) The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression Is regulated by low temperature but not by abscisic acid or dehydration. Plant Physiol. 119, 463-470.
    • (1999) Plant Physiol. , vol.119 , pp. 463-470
    • Medina, J.1    Bargues, M.2    Terol, J.3    Pérez-Alonso, M.4    Salinas, J.5
  • 29
    • 84906943773 scopus 로고    scopus 로고
    • QTL mapping of freezing tolerance: Links to fitness and adaptive trade-offs
    • Oakley, C.G., Ågren, J., Atchison, R.A., and, Schemske, D.W., (2014) QTL mapping of freezing tolerance: links to fitness and adaptive trade-offs. Mol. Ecol. 23, 4304-4315.
    • (2014) Mol. Ecol. , vol.23 , pp. 4304-4315
    • Oakley, C.G.1    Ågren, J.2    Atchison, R.A.3    Schemske, D.W.4
  • 30
    • 84926523633 scopus 로고    scopus 로고
    • Regulation of the Arabidopsis CBF regulon by a complex low temperature regulatory network
    • Park, S., Lee, C.M., Doherty, C.J., Gilmour, S.J., Kim, Y., and, Thomashow, M.F., (2015) Regulation of the Arabidopsis CBF regulon by a complex low temperature regulatory network. Plant J. 82, 193-207.
    • (2015) Plant J. , vol.82 , pp. 193-207
    • Park, S.1    Lee, C.M.2    Doherty, C.J.3    Gilmour, S.J.4    Kim, Y.5    Thomashow, M.F.6
  • 32
    • 0345863467 scopus 로고    scopus 로고
    • Cryoprotectin protects thylakoids during a freeze-thaw cycle by a mechanism involving stable membrane binding
    • Sror, H.A., Tischendorf, G., Sieg, F., Schmitt, J.M., and, Hincha, D.K., (2003) Cryoprotectin protects thylakoids during a freeze-thaw cycle by a mechanism involving stable membrane binding. Cryobiology, 47, 191-203.
    • (2003) Cryobiology , vol.47 , pp. 191-203
    • Sror, H.A.1    Tischendorf, G.2    Sieg, F.3    Schmitt, J.M.4    Hincha, D.K.5
  • 34
    • 0031017671 scopus 로고    scopus 로고
    • Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit
    • Stockinger, E.J., Gilmour, S.J., and, Thomashow, M.F., (1997) Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit. Proc. Natl Acad. Sci. USA, 94, 1035-1040.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 1035-1040
    • Stockinger, E.J.1    Gilmour, S.J.2    Thomashow, M.F.3
  • 35
    • 0033498862 scopus 로고    scopus 로고
    • Plant cold acclimation: Freezing tolerance genes and regulatory mechanisms
    • Thomashow, M.F., (1999) Plant cold acclimation: freezing tolerance genes and regulatory mechanisms. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50, 571-599.
    • (1999) Annu. Rev. Plant Physiol. Plant Mol. Biol. , vol.50 , pp. 571-599
    • Thomashow, M.F.1
  • 36
    • 77957748106 scopus 로고    scopus 로고
    • Molecular basis of plant cold acclimation: Insights gained from studying the CBF cold response pathway
    • Thomashow, M.F., (2010) Molecular basis of plant cold acclimation: insights gained from studying the CBF cold response pathway. Plant Physiol. 154, 571-577.
    • (2010) Plant Physiol. , vol.154 , pp. 571-577
    • Thomashow, M.F.1
  • 37
    • 12844280128 scopus 로고    scopus 로고
    • Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis
    • Vogel, J.T., Zarka, D.G., Van Buskirk, H.A., Fowler, S.G., and, Thomashow, M.F., (2005) Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis. Plant J. 41, 195-211.
    • (2005) Plant J. , vol.41 , pp. 195-211
    • Vogel, J.T.1    Zarka, D.G.2    Van Buskirk, H.A.3    Fowler, S.G.4    Thomashow, M.F.5
  • 38
    • 23744469718 scopus 로고    scopus 로고
    • Multiple hydrophobic motifs in Arabidopsis CBF1 COOH-terminus provide functional redundancy in trans-activation
    • Wang, Z., Triezenberg, S.J., Thomashow, M.F., and, Stockinger, E.J., (2005) Multiple hydrophobic motifs in Arabidopsis CBF1 COOH-terminus provide functional redundancy in trans-activation. Plant Mol. Biol. 58, 543-559.
    • (2005) Plant Mol. Biol. , vol.58 , pp. 543-559
    • Wang, Z.1    Triezenberg, S.J.2    Thomashow, M.F.3    Stockinger, E.J.4
  • 39
    • 0028370581 scopus 로고
    • A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress
    • Yamaguchi-Shinozaki, K., and, Shinozaki, K., (1994) A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress. Plant Cell, 6, 251-264.
    • (1994) Plant Cell , vol.6 , pp. 251-264
    • Yamaguchi-Shinozaki, K.1    Shinozaki, K.2
  • 40
    • 0142245605 scopus 로고    scopus 로고
    • Cold induction of Arabidopsis CBF genes involves multiple ICE (inducer of CBF expression) promoter elements and a cold-regulatory circuit that is desensitized by low temperature
    • Zarka, D.G., Vogel, J.T., Cook, D., and, Thomashow, M.F., (2003) Cold induction of Arabidopsis CBF genes involves multiple ICE (inducer of CBF expression) promoter elements and a cold-regulatory circuit that is desensitized by low temperature. Plant Physiol. 133, 910-918.
    • (2003) Plant Physiol. , vol.133 , pp. 910-918
    • Zarka, D.G.1    Vogel, J.T.2    Cook, D.3    Thomashow, M.F.4
  • 41
    • 37349089750 scopus 로고    scopus 로고
    • Clinal variation in freezing tolerance among natural accessions of Arabidopsis thaliana
    • Zhen, Y., and, Ungerer, M.C., (2008) Clinal variation in freezing tolerance among natural accessions of Arabidopsis thaliana. New Phytol. 177, 419-427.
    • (2008) New Phytol. , vol.177 , pp. 419-427
    • Zhen, Y.1    Ungerer, M.C.2


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