-
1
-
-
84885785987
-
Clinical whole-exome sequencing for the diagnosis of mendelian disorders
-
Yang Y, Muzny DM, Reid JG, Bainbridge MN, Willis A, Ward PA, et al. Clinical whole-exome sequencing for the diagnosis of mendelian disorders. N Engl J Med. 2013;369(16):1502-11.
-
(2013)
N Engl J Med
, vol.369
, Issue.16
, pp. 1502-1511
-
-
Yang, Y.1
Muzny, D.M.2
Reid, J.G.3
Bainbridge, M.N.4
Willis, A.5
Ward, P.A.6
-
2
-
-
84918840439
-
Clinical exome sequencing for genetic identification of rare Mendelian disorders
-
Lee H, Deignan JL, Dorrani N, Strom SP, Kantarci S, Quintero-Rivera F, et al. Clinical exome sequencing for genetic identification of rare Mendelian disorders. JAMA. 2014;312(18):1880-7.
-
(2014)
JAMA
, vol.312
, Issue.18
, pp. 1880-1887
-
-
Lee, H.1
Deignan, J.L.2
Dorrani, N.3
Strom, S.P.4
Kantarci, S.5
Quintero-Rivera, F.6
-
3
-
-
84884534186
-
Detection of clinically relevant copy number variants with whole-exome sequencing
-
de Ligt J, Boone PM, Pfundt R, Vissers LE, Richmond T, Geoghegan J, et al. Detection of clinically relevant copy number variants with whole-exome sequencing. Hum Mutat. 2013;34(10):1439-48.
-
(2013)
Hum Mutat
, vol.34
, Issue.10
, pp. 1439-1448
-
-
Ligt, J.1
Boone, P.M.2
Pfundt, R.3
Vissers, L.E.4
Richmond, T.5
Geoghegan, J.6
-
4
-
-
84905828993
-
Identification of copy number variants from exome sequence data
-
Samarakoon PS, Sorte HS, Kristiansen BE, Skodje T, Sheng Y, Tjonnfjord GE, et al. Identification of copy number variants from exome sequence data. BMC Genomics. 2014;15:661.
-
(2014)
BMC Genomics
, vol.15
, pp. 661
-
-
Samarakoon, P.S.1
Sorte, H.S.2
Kristiansen, B.E.3
Skodje, T.4
Sheng, Y.5
Tjonnfjord, G.E.6
-
5
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 2011;43(5):491-8.
-
(2011)
Nat Genet
, vol.43
, Issue.5
, pp. 491-498
-
-
DePristo, M.A.1
Banks, E.2
Poplin, R.3
Garimella, K.V.4
Maguire, J.R.5
Hartl, C.6
-
6
-
-
82955184653
-
Modeling read counts for CNV detection in exome sequencing data
-
Love MI, Mysickova A, Sun R, Kalscheuer V, Vingron M, Haas SA. Modeling read counts for CNV detection in exome sequencing data. Stat Appl Genet Mol Biol. 2011, 10(1). doi: 10.2202/1544-6115.1732.
-
(2011)
Stat Appl Genet Mol Biol.
, vol.10
, Issue.1
-
-
Love, M.I.1
Mysickova, A.2
Sun, R.3
Kalscheuer, V.4
Vingron, M.5
Haas, S.A.6
-
7
-
-
84868026566
-
A robust model for read count data in exome sequencing experiments and implications for copy number variant calling
-
Plagnol V, Curtis J, Epstein M, Mok KY, Stebbings E, Grigoriadou S, et al. A robust model for read count data in exome sequencing experiments and implications for copy number variant calling. Bioinformatics. 2012;28(21):2747-54.
-
(2012)
Bioinformatics
, vol.28
, Issue.21
, pp. 2747-2754
-
-
Plagnol, V.1
Curtis, J.2
Epstein, M.3
Mok, K.Y.4
Stebbings, E.5
Grigoriadou, S.6
-
8
-
-
84864609288
-
Copy number variation detection and genotyping from exome sequence data
-
Krumm N, Sudmant PH, Ko A, O'Roak BJ, Malig M, Coe BP, et al. Copy number variation detection and genotyping from exome sequence data. Genome Res. 2012;22(8):1525-32.
-
(2012)
Genome Res
, vol.22
, Issue.8
, pp. 1525-1532
-
-
Krumm, N.1
Sudmant, P.H.2
Ko, A.3
O'Roak, B.J.4
Malig, M.5
Coe, B.P.6
-
9
-
-
84867280219
-
Discovery and statistical genotyping of copy-number variation from whole-exome sequencing depth
-
Fromer M, Moran JL, Chambert K, Banks E, Bergen SE, Ruderfer DM, et al. Discovery and statistical genotyping of copy-number variation from whole-exome sequencing depth. Am J Hum Genet. 2012;91(4):597-607.
-
(2012)
Am J Hum Genet
, vol.91
, Issue.4
, pp. 597-607
-
-
Fromer, M.1
Moran, J.L.2
Chambert, K.3
Banks, E.4
Bergen, S.E.5
Ruderfer, D.M.6
-
10
-
-
77956534324
-
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
-
Wang K, Li M, Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 2010;38(16):e164.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.16
, pp. e164
-
-
Wang, K.1
Li, M.2
Hakonarson, H.3
-
11
-
-
77955405475
-
Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
-
McLaren W, Pritchard B, Rios D, Chen Y, Flicek P, Cunningham F. Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. Bioinformatics. 2010;26(16):2069-70.
-
(2010)
Bioinformatics
, vol.26
, Issue.16
, pp. 2069-2070
-
-
McLaren, W.1
Pritchard, B.2
Rios, D.3
Chen, Y.4
Flicek, P.5
Cunningham, F.6
-
12
-
-
84893592675
-
CNVannotator: a comprehensive annotation server for copy number variation in the human genome
-
Zhao M, Zhao Z. CNVannotator: a comprehensive annotation server for copy number variation in the human genome. PLoS One. 2013;8(11):e80170.
-
(2013)
PLoS One
, vol.8
, Issue.11
, pp. e80170
-
-
Zhao, M.1
Zhao, Z.2
-
13
-
-
84979865467
-
DeAnnCNV: a tool for online detection and annotation of copy number variations from whole-exome sequencing data
-
Zhang Y, Yu Z, Ban R, Zhang H, Iqbal F, Zhao A, et al. DeAnnCNV: a tool for online detection and annotation of copy number variations from whole-exome sequencing data. Nucleic Acids Res. 2015. doi: 10.1093/nar/gkv556.
-
(2015)
Nucleic Acids Res.
-
-
Zhang, Y.1
Yu, Z.2
Ban, R.3
Zhang, H.4
Iqbal, F.5
Zhao, A.6
-
15
-
-
84923642484
-
A copy number variation map of the human genome
-
Zarrei M, MacDonald JR, Merico D, Scherer SW. A copy number variation map of the human genome. Nat Rev Genet. 2015;16(3):172-83.
-
(2015)
Nat Rev Genet
, vol.16
, Issue.3
, pp. 172-183
-
-
Zarrei, M.1
MacDonald, J.R.2
Merico, D.3
Scherer, S.W.4
-
16
-
-
84886811866
-
Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives
-
Zhao M, Wang Q, Wang Q, Jia P, Zhao Z. Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives. BMC Bioinformatics. 2013;14 Suppl 11:S1.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. S1
-
-
Zhao, M.1
Wang, Q.2
Wang, Q.3
Jia, P.4
Zhao, Z.5
-
17
-
-
84857170661
-
Read count approach for DNA copy number variants detection
-
Magi A, Tattini L, Pippucci T, Torricelli F, Benelli M. Read count approach for DNA copy number variants detection. Bioinformatics. 2012;28(4):470-8.
-
(2012)
Bioinformatics
, vol.28
, Issue.4
, pp. 470-478
-
-
Magi, A.1
Tattini, L.2
Pippucci, T.3
Torricelli, F.4
Benelli, M.5
-
18
-
-
84865760395
-
GENCODE: the reference human genome annotation for The ENCODE Project
-
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, et al. GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res. 2012;22(9):1760-74.
-
(2012)
Genome Res
, vol.22
, Issue.9
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.M.3
Tapanari, E.4
Diekhans, M.5
Kokocinski, F.6
-
19
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 2005;15(8):1034-50.
-
(2005)
Genome Res
, vol.15
, Issue.8
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
-
20
-
-
78449263023
-
Characterising and predicting haploinsufficiency in the human genome
-
Huang N, Lee I, Marcotte EM, Hurles ME. Characterising and predicting haploinsufficiency in the human genome. PLoS Genet. 2010;6(10):e1001154.
-
(2010)
PLoS Genet
, vol.6
, Issue.10
, pp. e1001154
-
-
Huang, N.1
Lee, I.2
Marcotte, E.M.3
Hurles, M.E.4
-
21
-
-
84884592445
-
Genic intolerance to functional variation and the interpretation of personal genomes
-
Petrovski S, Wang Q, Heinzen EL, Allen AS, Goldstein DB. Genic intolerance to functional variation and the interpretation of personal genomes. PLoS Genet. 2013;9(8):e1003709.
-
(2013)
PLoS Genet
, vol.9
, Issue.8
, pp. e1003709
-
-
Petrovski, S.1
Wang, Q.2
Heinzen, E.L.3
Allen, A.S.4
Goldstein, D.B.5
-
22
-
-
77950461601
-
Origins and functional impact of copy number variation in the human genome
-
Conrad DF, Pinto D, Redon R, Feuk L, Gokcumen O, Zhang Y, et al. Origins and functional impact of copy number variation in the human genome. Nature. 2010;464(7289):704-12.
-
(2010)
Nature
, vol.464
, Issue.7289
, pp. 704-712
-
-
Conrad, D.F.1
Pinto, D.2
Redon, R.3
Feuk, L.4
Gokcumen, O.5
Zhang, Y.6
-
23
-
-
84975804424
-
Mapping copy number variation by population-scale genome sequencing
-
Mills RE, Walter K, Stewart C, Handsaker RE, Chen K, Alkan C, et al. Mapping copy number variation by population-scale genome sequencing. Nature. 2011;470(7332):59-65.
-
(2011)
Nature
, vol.470
, Issue.7332
, pp. 59-65
-
-
Mills, R.E.1
Walter, K.2
Stewart, C.3
Handsaker, R.E.4
Chen, K.5
Alkan, C.6
-
24
-
-
84891783452
-
The Database of Genomic Variants: a curated collection of structural variation in the human genome
-
MacDonald JR, Ziman R, Yuen RK, Feuk L, Scherer SW. The Database of Genomic Variants: a curated collection of structural variation in the human genome. Nucleic Acids Res. 2014;42(Database issue):D986-92.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.DATABASE ISSUE
, pp. D986-D992
-
-
MacDonald, J.R.1
Ziman, R.2
Yuen, R.K.3
Feuk, L.4
Scherer, S.W.5
-
25
-
-
13444266370
-
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
-
Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA. Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res. 2005;33(Database issue):D514-7.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.DATABASE ISSUE
, pp. D514-D517
-
-
Hamosh, A.1
Scott, A.F.2
Amberger, J.S.3
Bocchini, C.A.4
McKusick, V.A.5
-
26
-
-
84891809093
-
ClinVar: public archive of relationships among sequence variation and human phenotype
-
Landrum MJ, Lee JM, Riley GR, Jang W, Rubinstein WS, Church DM, et al. ClinVar: public archive of relationships among sequence variation and human phenotype. Nucleic Acids Res. 2014;42(Database issue):D980-5.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.DATABASE ISSUE
, pp. D980-D985
-
-
Landrum, M.J.1
Lee, J.M.2
Riley, G.R.3
Jang, W.4
Rubinstein, W.S.5
Church, D.M.6
-
27
-
-
84879568357
-
Different unequal cross-over events between NCF1 and its pseudogenes in autosomal p47(phox)-deficient chronic granulomatous disease
-
Hayrapetyan A, Dencher PC, van Leeuwen K, de Boer M, Roos D. Different unequal cross-over events between NCF1 and its pseudogenes in autosomal p47(phox)-deficient chronic granulomatous disease. Biochim Biophys Acta. 2013;1832(10):1662-72.
-
(2013)
Biochim Biophys Acta
, vol.1832
, Issue.10
, pp. 1662-1672
-
-
Hayrapetyan, A.1
Dencher, P.C.2
Leeuwen, K.3
Boer, M.4
Roos, D.5
-
28
-
-
84969325488
-
-
Novocraft Novoalign [ http://www.novocraft.com/ ]
-
-
-
-
29
-
-
84969311180
-
-
Picard [ http://broadinstitute.github.io/picard/ ]
-
-
-
|