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Volumn 12, Issue 113, 2015, Pages

Searching for motifs in the behaviour of larval Drosophila melanogaster and Caenorhabditis elegans reveals continuity between behavioural states

Author keywords

Behavioural states; Caenorhabditis elegans; Drosophila melanogaster larva; Eigenmaggots; Eigenworms; Ethogram

Indexed keywords

BIOPHYSICS; BIOTECHNOLOGY;

EID: 84954181803     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2015.0899     Document Type: Article
Times cited : (39)

References (36)
  • 1
    • 84908500040 scopus 로고    scopus 로고
    • Big behavioral data: Psychology, ethology and the foundations of neuroscience
    • Marin AG, Paton JJ, Kampff AR, Costa RM, Mainen ZF. 2014 Big behavioral data: Psychology, ethology and the foundations of neuroscience. Nat. Neurosci. 17, 1455-1462. (doi:10.1038/nn.3812)
    • (2014) Nat. Neurosci. , vol.17 , pp. 1455-1462
    • Marin, A.G.1    Paton, J.J.2    Kampff, A.R.3    Costa, R.M.4    Mainen, Z.F.5
  • 2
    • 84872005234 scopus 로고    scopus 로고
    • JAABA: Interactive machine learning for automatic annotation of animal behavior
    • Kabra M, Robie AA, Alba MR, Branson S, Branson K. 2013 JAABA: Interactive machine learning for automatic annotation of animal behavior. Nat. Methods 10, 64-67. (doi:10.1038/nmeth.2281)
    • (2013) Nat. Methods , vol.10 , pp. 64-67
    • Kabra, M.1    Robie, A.A.2    Alba, M.R.3    Branson, S.4    Branson, K.5
  • 3
    • 84882718493 scopus 로고    scopus 로고
    • High-throughput analysis of stimulus-evoked behaviors in Drosophila larva reveals multiple modality-specific escape strategies
    • Ohyama T, Jovanic T, Denisov G, Dang TC, Hoffmann D, Kerr RA, Zlatic M. 2013 High-throughput analysis of stimulus-evoked behaviors in Drosophila larva reveals multiple modality-specific escape strategies. PLoS ONE 8, e71706. (doi:10.1371/journal.pone. 0071706)
    • (2013) PLoS ONE , vol.8 , pp. e71706
    • Ohyama, T.1    Jovanic, T.2    Denisov, G.3    Dang, T.C.4    Hoffmann, D.5    Kerr, R.A.6    Zlatic, M.7
  • 4
    • 80052399832 scopus 로고    scopus 로고
    • Active sampling and decision making in Drosophila chemotaxis
    • Marin AG, Stephens GJ, Louis M. 2011 Active sampling and decision making in Drosophila chemotaxis. Nat. Commun. 2, 441. (doi:10.1038/ncomms1455)
    • (2011) Nat. Commun. , vol.2 , pp. 441
    • Marin, A.G.1    Stephens, G.J.2    Louis, M.3
  • 5
    • 84893102611 scopus 로고    scopus 로고
    • Mechanistic analysis of the search behaviour of Caenorhabditis elegans
    • Salvador LCM, Bartumeus F, Levin SA, Ryu WS. 2014 Mechanistic analysis of the search behaviour of Caenorhabditis elegans. J. R. Soc. Interface 11, 20131092. (doi:10.1098/rsif.2013.1092)
    • (2014) J. R. Soc. Interface , vol.11 , pp. 20131092
    • Salvador, L.C.M.1    Bartumeus, F.2    Levin, S.A.3    Ryu, W.S.4
  • 6
    • 84883454459 scopus 로고    scopus 로고
    • A database of Caenorhabditis elegans behavioral phenotypes
    • Yemini E, Jucikas T, Grundy LJ, Brown A, Schafer WR. 2013 A database of Caenorhabditis elegans behavioral phenotypes. Nat. Methods 10, 877-879. (doi:10.1038/nmeth.2560)
    • (2013) Nat. Methods , vol.10 , pp. 877-879
    • Yemini, E.1    Jucikas, T.2    Grundy, L.J.3    Brown, A.4    Schafer, W.R.5
  • 7
    • 42949101742 scopus 로고    scopus 로고
    • Dimensionality and dynamics in the behavior of C. Elegans
    • Stephens GJ, Johnson-Kerner B, Bialek W, Ryu WS. 2008 Dimensionality and dynamics in the behavior of C. elegans. PLoS Comput. Biol. 4, e1000028. (doi:10.1371/journal.pcbi.1000028)
    • (2008) PLoS Comput. Biol. , vol.4 , pp. e1000028
    • Stephens, G.J.1    Johnson-Kerner, B.2    Bialek, W.3    Ryu, W.S.4
  • 8
    • 78649672225 scopus 로고    scopus 로고
    • A review on time series data mining
    • Fu T-C. 2011 A review on time series data mining. Eng. Appl. Artif. Intell. 24, 164-181. (doi:10.1016/j. engappai.2010.09.007)
    • (2011) Eng. Appl. Artif. Intell. , vol.24 , pp. 164-181
    • Fu, T.-C.1
  • 9
    • 58149367343 scopus 로고
    • Organization and patterns of inter-and intraspecific variation in the behaviour of Drosophila larvae
    • Green CH, Burnet B, Connolly KJ. 1983 Organization and patterns of inter-and intraspecific variation in the behaviour of Drosophila larvae. Anim. Behav. 31, 282-291. (doi:10.1016/S0003-3472(83)80198-5)
    • (1983) Anim. Behav. , vol.31 , pp. 282-291
    • Green, C.H.1    Burnet, B.2    Connolly, K.J.3
  • 10
    • 85006312265 scopus 로고    scopus 로고
    • Mapping the stereotyped behaviour of freely moving fruit flies
    • Berman GJ, Choi DM, Bialek W, Shaevitz JW. 2014 Mapping the stereotyped behaviour of freely moving fruit flies. J. R. Soc. Interface 11, 20140672. (doi:10.1098/rsif.2014.0672)
    • (2014) J. R. Soc. Interface , vol.11 , pp. 20140672
    • Berman, G.J.1    Choi, D.M.2    Bialek, W.3    Shaevitz, J.W.4
  • 11
    • 84872196549 scopus 로고    scopus 로고
    • A dictionary of behavioral motifs reveals clusters of genes affecting Caenorhabditis elegans locomotion
    • Brown AE, Yemini EI, Grundy LJ, Jucikas T, Schafer WR. 2013 A dictionary of behavioral motifs reveals clusters of genes affecting Caenorhabditis elegans locomotion. Proc. Natl Acad. Sci. USA 110, 791-796. (doi:10.1073/pnas.1211447110)
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 791-796
    • Brown, A.E.1    Yemini, E.I.2    Grundy, L.J.3    Jucikas, T.4    Schafer, W.R.5
  • 12
    • 84898967417 scopus 로고    scopus 로고
    • Joint probabilistic curve clustering and alignment
    • (NIPS 2004) Cambridge, MA MIT Press
    • Gaffney SJ, Smyth P. 2005 Joint probabilistic curve clustering and alignment. In Advances in Neural Information Processing Systems 17 (NIPS 2004). Cambridge, MA: MIT Press.
    • (2005) Advances in Neural Information Processing Systems , vol.17
    • Gaffney, S.J.1    Smyth, P.2
  • 14
    • 84933055801 scopus 로고    scopus 로고
    • Dynamical feature extraction at the sensory periphery guides chemotaxis
    • Schulze A et al. 2015 Dynamical feature extraction at the sensory periphery guides chemotaxis. eLife 4, e06694. (doi:10.7554/eLife.06694)
    • (2015) ELife , vol.4 , pp. e06694
    • Schulze, A.1
  • 17
    • 25144451767 scopus 로고    scopus 로고
    • The curse of dimensionality in data mining and time series prediction
    • Spain, 8-10 June (eds J Cabestany, A Prieto, F Sandoval), Lecture Notes in Computer Science 3512 Berlin, Germany Springer
    • Verleysen M, François D. 2005 The curse of dimensionality in data mining and time series prediction. In IWANN'05 Proc., Computational Intelligence and Bioinspired Systems, Barcelona, Spain, 8-10 June (eds J Cabestany, A Prieto, F Sandoval), Lecture Notes in Computer Science 3512, pp. 758-770. Berlin, Germany: Springer.
    • (2005) IWANN'05 Proc., Computational Intelligence and Bioinspired Systems, Barcelona , pp. 758-770
    • Verleysen, M.1    François, D.2
  • 18
    • 0000120766 scopus 로고
    • Estimating the dimension of a model
    • Schwarz G. 1978 Estimating the dimension of a model. Ann. Stat. 6, 461-464. (doi:10.1214/aos/1176344136)
    • (1978) Ann. Stat. , vol.6 , pp. 461-464
    • Schwarz, G.1
  • 19
    • 0032269108 scopus 로고    scopus 로고
    • How many clusters? Which clustering method? Answers via model-based cluster analysis
    • Fraley C, Raftery AE. 1998 How many clusters? Which clustering method? Answers via model-based cluster analysis. Comput. J. 41, 578-588. (doi:10. 1093/comjnl/41.8.578)
    • (1998) Comput. J. , vol.41 , pp. 578-588
    • Fraley, C.1    Raftery, A.E.2
  • 21
    • 84963788609 scopus 로고    scopus 로고
    • A mathematical theory of communication
    • Shannon C. 2001 A mathematical theory of communication. ACM Sigmobile Mobile Comput. Commun. Rev. 5, 3-55. (doi:10.1145/584091. 584093)
    • (2001) ACM Sigmobile Mobile Comput. Commun. Rev. , vol.5 , pp. 3-55
    • Shannon, C.1
  • 22
    • 84864758525 scopus 로고    scopus 로고
    • Evaluation: From precision, recall and F-measure to ROC, informedness, markedness and correlation
    • Powers DM. 2011 Evaluation: From precision, recall and F-measure to ROC, informedness, markedness and correlation. J. Mach. Learn. Technol. 2, 37-63.
    • (2011) J. Mach. Learn. Technol. , vol.2 , pp. 37-63
    • Powers, D.M.1
  • 23
    • 33750955611 scopus 로고    scopus 로고
    • Machine vision based detection of omega bends and reversals in C. Elegans
    • Huang K-M, Cosman P, Schafer WR. 2006 Machine vision based detection of omega bends and reversals in C. elegans. J. Neurosci. Methods 158, 323-336. (doi:10.1016/j.jneumeth.2006.06. 007)
    • (2006) J. Neurosci. Methods , vol.158 , pp. 323-336
    • Huang, K.-M.1    Cosman, P.2    Schafer, W.R.3
  • 25
    • 77956220369 scopus 로고    scopus 로고
    • Kernel density estimation via diffusion
    • Botev ZI et al. 2010 Kernel density estimation via diffusion. Ann. Stat. 38, 2916-2957. (doi:10.1214/10-AOS799)
    • (2010) Ann. Stat. , vol.38 , pp. 2916-2957
    • Botev, Z.I.1
  • 26
    • 80051803806 scopus 로고    scopus 로고
    • Forward locomotion of the nematode C. Elegans is achieved through modulation of a single gait
    • Berri S, Boyle JH, Tassieri M, Hope IA, Cohen N. 2009 Forward locomotion of the nematode C. elegans is achieved through modulation of a single gait. HFSP J. 3, 186-193. (doi:10.2976/1. 3082260)
    • (2009) HFSP J. , vol.3 , pp. 186-193
    • Berri, S.1    Boyle, J.H.2    Tassieri, M.3    Hope, I.A.4    Cohen, N.5
  • 27
    • 84865734203 scopus 로고    scopus 로고
    • Characterization of Drosophila larval crawling at the level of organism, segment, and somatic body wall musculature
    • Heckscher ES, Lockery SR, Doe CQ. 2012 Characterization of Drosophila larval crawling at the level of organism, segment, and somatic body wall musculature. J. Neurosci. 32, 12 460-12 471. (doi:10.1523/JNEUROSCI.0222-12.2012)
    • (2012) J. Neurosci. , vol.32 , pp. 12460-12471
    • Heckscher, E.S.1    Lockery, S.R.2    Doe, C.Q.3
  • 28
    • 84899521696 scopus 로고    scopus 로고
    • A novel behavioral strategy, continuous biased running, during chemotaxis in Drosophila larvae
    • Ohashi S, Morimoto T, Suzuki Y, Miyakawa H, Aonishi T. 2014 A novel behavioral strategy, continuous biased running, during chemotaxis in Drosophila larvae. Neurosci. Lett. 570, 10-15. (doi:10.1016/j.neulet.2014.04.011)
    • (2014) Neurosci. Lett. , vol.570 , pp. 10-15
    • Ohashi, S.1    Morimoto, T.2    Suzuki, Y.3    Miyakawa, H.4    Aonishi, T.5
  • 29
    • 84894079683 scopus 로고    scopus 로고
    • Multilevel control of run orientation in Drosophila larval chemotaxis
    • Marin AG, Louis M. 2014 Multilevel control of run orientation in Drosophila larval chemotaxis. Front. Behav. Neurosci. 8. (doi:10.3389/fnbeh.2014.00038)
    • (2014) Front. Behav. Neurosci. , vol.8
    • Marin, A.G.1    Louis, M.2
  • 30
    • 84885032108 scopus 로고    scopus 로고
    • Sensorimotor structure of Drosophila larva phototaxis
    • Kane EA et al. 2013 Sensorimotor structure of Drosophila larva phototaxis. Proc. Natl Acad. Sci. USA 110, E3868-E3877. (doi:10.1073/pnas. 1215295110)
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 3868-3877
    • Kane, E.A.1
  • 31
    • 84875544293 scopus 로고    scopus 로고
    • The geometry of locomotive behavioral states in C. Elegans
    • Gallagher T, Bjorness T, Greene R, You Y-J, Avery L. 2013 The geometry of locomotive behavioral states in C. elegans. PLoS ONE 8, e59865. (doi:10.1371/journal.pone.0059865)
    • (2013) PLoS ONE , vol.8 , pp. e59865
    • Gallagher, T.1    Bjorness, T.2    Greene, R.3    You, Y.-J.4    Avery, L.5
  • 34
    • 80053975123 scopus 로고    scopus 로고
    • The computational worm: Spatial orientation and its neuronal basis in C
    • Lockery SR. 2011 The computational worm: Spatial orientation and its neuronal basis in C. elegans. Curr. Opin. Neurobiol. 21, 782-790. (doi:10.1016/j. conb.2011.06.009)
    • (2011) Elegans. Curr. Opin. Neurobiol. , vol.21 , pp. 782-790
    • Lockery, S.R.1
  • 35
    • 84903289127 scopus 로고    scopus 로고
    • Clustering by fast search and find of density peaks
    • Rodriguez A, Laio A. 2014 Clustering by fast search and find of density peaks. Science 344, 1492-1496. (doi:10.1126/science.1242072)
    • (2014) Science , vol.344 , pp. 1492-1496
    • Rodriguez, A.1    Laio, A.2
  • 36
    • 0347172110 scopus 로고    scopus 로고
    • Optics: Ordering points to identify the clustering structure
    • From the proceedings of the 1999 ACM Sigmod conference on management of data
    • Ankerst M, Breunig MM, Kriegel H-P, Sander J. 1999 Optics: Ordering points to identify the clustering structure. ACM SIGMOD Rec. 28, 49-60. From the proceedings of the 1999 ACM Sigmod conference on management of data. (doi:10.1145/304181.304187)
    • (1999) ACM SIGMOD Rec. , vol.28 , pp. 49-60
    • Ankerst, M.1    Breunig, M.M.2    Kriegel, H.-P.3    Sander, J.4


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