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Volumn 9, Issue 3, 2015, Pages 1331-1343

Genome sequence of the exopolysaccharide-producing Salipiger mucosus type strain (DSM 16094T), a moderately halophilic member of the Roseobacter clade

Author keywords

Aerobic; Alphaproteobacteria; Chemoheterotrophic; Extrachromosomal elements; OmniLog phenotyping; Photosynthesis; Rhodobac; Rod shaped; Roseobacter clade

Indexed keywords

CATALASE; CYSTEINE; CYTOCHROME C OXIDASE; EXOPOLYSACCHARIDE; PHOSPHATASE; POLYHYDROXYALKANOIC ACID; RNA 16S; UBIDECARENONE;

EID: 84954126409     PISSN: None     EISSN: 19443277     Source Type: Journal    
DOI: 10.4056/sigs.4909790     Document Type: Article
Times cited : (11)

References (46)
  • 1
    • 33750371632 scopus 로고    scopus 로고
    • Environmental biology of the marine Roseobacter lineage
    • PubMed
    • Wagner-Döbler I, Biebl H. Environmental biology of the marine Roseobacter lineage. Annu Rev Microbiol 2006; 60:255-280. PubMed http://dx.doi.org/10.1146/annurev.micro.60.080805.142115
    • (2006) Annu Rev Microbiol , vol.60 , pp. 255-280
    • Wagner-Döbler, I.1    Biebl, H.2
  • 4
    • 26844510681 scopus 로고    scopus 로고
    • Overview of the marine Roseobacter lineage
    • PubMed
    • Buchan A, González JM, Moran MA. Overview of the marine Roseobacter lineage. Appl Environ Microbiol 2005; 71:5665-5677. PubMed http://dx.doi.org/10.1128/AEM.71.10.5665-5677.2005
    • (2005) Appl Environ Microbiol , vol.71 , pp. 5665-5677
    • Buchan, A.1    González, J.M.2    Moran, M.A.3
  • 5
    • 0033770992 scopus 로고    scopus 로고
    • Bacte-rial community structure associated with a dimethylsulfoniopropionate-producing North At-lantic algal bloom
    • PubMed
    • González JM, Simó R, Massana R, Covert JS, Casamayor EO, Pedrós-Alió C, Moran MA. Bacte-rial community structure associated with a dimethylsulfoniopropionate-producing North At-lantic algal bloom. Appl Environ Microbiol 2000; 66:4237-4246. PubMed http://dx.doi.org/10.1128/AEM.66.10.4237-4246.2000
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4237-4246
    • González, J.M.1    Simó, R.2    Massana, R.3    Covert, J.S.4    Casamayor, E.O.5    Pedrós-Alió, C.6    Moran, M.A.7
  • 7
    • 5444254370 scopus 로고    scopus 로고
    • Salipiger mucescens gen. nov., sp. nov., a moderately halophilic, exopolysaccharide-producing bacte-rium isolated from hypersaline soil, belonging to the a-Proteobacteria
    • PubMed
    • Martínez-Cánovas MJ, Quesada E, Martínez-Checa F, del Moral A, Béjar V. Salipiger mucescens gen. nov., sp. nov., a moderately halophilic, exopolysaccharide-producing bacte-rium isolated from hypersaline soil, belonging to the a-Proteobacteria. Int J Syst Evol Microbiol 2004; 54:1735-1740. PubMed http://dx.doi.org/10.1099/ijs.0.63166-0
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1735-1740
    • Martínez-Cánovas, M.J.1    Quesada, E.2    Martínez-Checa, F.3    del Moral, A.4    Béjar, V.5
  • 8
    • 0001300343 scopus 로고    scopus 로고
    • Physiology of halophilic eubacteria
    • Rodriguez-Valera F. (Ed.), CRC Press, Boca Ratoa
    • Kushner DJ, Kamekura M. Physiology of halophilic eubacteria. In: Rodriguez-Valera F. (Ed.), Halophilic Bacteria 1988, Vol. 1, CRC Press, Boca Ratoa, pp. 109-138.
    • Halophilic Bacteria 1988 , vol.1 , pp. 109-138
    • Kushner, D.J.1    Kamekura, M.2
  • 9
    • 0031810562 scopus 로고    scopus 로고
    • Biology of moderate-ly halophilic aerobic bacteria
    • PubMed
    • Ventosa A, Nieto JJ, Oren A. Biology of moderate-ly halophilic aerobic bacteria. Microbiol Mol Biol Rev 1998; 62:504-544. PubMed
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 504-544
    • Ventosa, A.1    Nieto, J.J.2    Oren, A.3
  • 11
    • 77956396413 scopus 로고    scopus 로고
    • Characterization of the exopolysaccharide produced by Salipiger mucosus A3T, a halophilic species belonging to the Alphaproteobacteria, isolated on the Spanish mediterranean seaboard
    • PubMed
    • Llamas I, Mata JA, Tallon R, Bressollier P, Urdaci MC, Quesada EB, Béjar V. Characterization of the exopolysaccharide produced by Salipiger mucosus A3T, a halophilic species belonging to the Alphaproteobacteria, isolated on the Spanish mediterranean seaboard. Mar Drugs 2010; 8:2240-2251. PubMed http://dx.doi.org/10.3390/md8082240
    • (2010) Mar Drugs , vol.8 , pp. 2240-2251
    • Llamas, I.1    Mata, J.A.2    Tallon, R.3    Bressollier, P.4    Urdaci, M.C.5    Quesada, E.B.6    Béjar, V.7
  • 12
    • 84879351437 scopus 로고    scopus 로고
    • Phylogeny-driven target se-lection for large-scale genome-sequencing (and other) projects
    • PubMed
    • Göker M, Klenk HP. Phylogeny-driven target se-lection for large-scale genome-sequencing (and other) projects. Stand Genomic Sci 2013; 8:360-374. PubMed http://dx.doi.org/10.4056/sigs.3446951
    • (2013) Stand Genomic Sci , vol.8 , pp. 360-374
    • Göker, M.1    Klenk, H.P.2
  • 13
    • 77952889628 scopus 로고    scopus 로고
    • En route to a genome-based classification of Archaea and Bacteria?
    • PubMed
    • Klenk HP, Göker M. En route to a genome-based classification of Archaea and Bacteria? Syst Appl Microbiol 2010; 33:175-182. PubMed http://dx.doi.org/10.1016/j.syapm.2010.03.003
    • (2010) Syst Appl Microbiol , vol.33 , pp. 175-182
    • Klenk, H.P.1    Göker, M.2
  • 15
    • 36849014457 scopus 로고    scopus 로고
    • An empirical test of the midpoint rooting method
    • Hess PN, De Moraes Russo CA. An empirical test of the midpoint rooting method. Biol J Linn Soc Lond 2007; 92:669-674. http://dx.doi.org/10.1111/j.1095-8312.2007.00864.x
    • (2007) Biol J Linn Soc Lond , vol.92 , pp. 669-674
    • Hess, P.N.1    De Moraes Russo, C.A.2
  • 16
    • 84859165788 scopus 로고    scopus 로고
    • The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their as-sociated metadata
    • PubMed
    • Pagani I, Liolios K, Jansson J, Chen IM, Smirnova T, Nosrat B, Markowitz VM, Kyrpides NC. The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their as-sociated metadata. Nucleic Acids Res 2012; 40:D571-D579. PubMed http://dx.doi.org/10.1093/nar/gkr1100
    • (2012) Nucleic Acids Res , vol.40 , pp. D571-D579
    • Pagani, I.1    Liolios, K.2    Jansson, J.3    Chen, I.M.4    Smirnova, T.5    Nosrat, B.6    Markowitz, V.M.7    Kyrpides, N.C.8
  • 17
    • 84881065378 scopus 로고    scopus 로고
    • Genome sequence of the reddish-pigmented Rubellimicrobium thermophilum type strain (DSM 16684T), a member of the Roseobacter clade
    • PubMed
    • Fiebig A, Riedel T, Gronow S, Klenk HP, Göker M. Genome sequence of the reddish-pigmented Rubellimicrobium thermophilum type strain (DSM 16684T), a member of the Roseobacter clade. Stand Genomic Sci 2013; 8:480-490. PubMed http://dx.doi.org/10.4056/sigs.4247911
    • (2013) Stand Genomic Sci , vol.8 , pp. 480-490
    • Fiebig, A.1    Riedel, T.2    Gronow, S.3    Klenk, H.P.4    Göker, M.5
  • 20
    • 0025300402 scopus 로고
    • Towards a natural system of organisms. Proposal for the do-mains Archaea and Bacteria
    • PubMed
    • Woese CR, Kandler O, Weelis ML. Towards a natural system of organisms. Proposal for the do-mains Archaea and Bacteria. Proc Natl Acad Sci USA 1990; 87:4576-4579. PubMed http://dx.doi.org/10.1073/pnas.87.12.4576
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Weelis, M.L.3
  • 21
    • 84988888640 scopus 로고    scopus 로고
    • Phylum XIV. Proteobacteria phyl nov
    • Brenner DJ, Krieg NR, Stanley JT, Garrity GM, second edition. (The Proteobacteria), part B (The Gammaproteobacteria), Springer, New York
    • Garrity GM, Bell JA, Lilburn T. Phylum XIV. Proteobacteria phyl nov. In: Brenner DJ, Krieg NR, Stanley JT, Garrity GM (eds), Bergey's Manu-al of Sytematic Bacteriology, second edition. Vol. 2 (The Proteobacteria), part B (The Gammaproteobacteria), Springer, New York, 2005, p. 1.
    • (2005) Bergey's Manu-al of Sytematic Bacteriology , vol.2 , pp. 1
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.3
  • 22
    • 84988831827 scopus 로고    scopus 로고
    • Class I. Alphaproteobacteria class. nov
    • Brenner DJ, Krieg NR, Stanley JT, Garrity GM, second edition. (The Proteobacteria), part C (The Al-pha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York
    • Garrity GM, Bell JA, Lilburn T. Class I. Alphaproteobacteria class. nov. In: Brenner DJ, Krieg NR, Stanley JT, Garrity GM (eds), Bergey's Manual of Sytematic Bacteriology, second edi-tion. Vol. 2 (The Proteobacteria), part C (The Al-pha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York, 2005, p. 1.
    • (2005) Bergey's Manual of Sytematic Bacteriology , vol.2 , pp. 1
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.3
  • 23
    • 33746265973 scopus 로고    scopus 로고
    • Validation List No.107. List of new names and new combinations previously effectively, but not validly, published
    • PubMed
    • Validation List No. 107. List of new names and new combinations previously effectively, but not validly, published. Int J Syst Evol Microbiol 2006; 56:1-6. PubMed http://dx.doi.org/10.1099/ijs.0.64188-0
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 1-6
  • 24
    • 33646193540 scopus 로고    scopus 로고
    • Order III. Rhodobacterales ord. nov
    • Brenner DJ, Krieg NR, Staley JT, Garrity GM, second edition. vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York
    • Garrity GM, Bell JA, Lilburn T. Order III. Rhodobacterales ord. nov. In: Brenner DJ, Krieg NR, Staley JT, Garrity GM (eds), Bergey's Manual of Systematic Bacteriology, second edition. vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York, 2005, p. 161.
    • (2005) Bergey's Manual of Systematic Bacteriology , pp. 161
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.3
  • 25
    • 33646193540 scopus 로고    scopus 로고
    • Family I. Rhodobacteraceae fam. nov
    • Brenner DJ, Krieg NR, Staley JT, Garrity GM, second edition. vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York
    • Garrity GM, Bell JA, Lilburn T. Family I. Rhodobacteraceae fam. nov. In: Brenner DJ, Krieg NR, Staley JT, Garrity GM (eds), Bergey's Manual of Systematic Bacteriology, second edition. vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York, 2005, p. 161.
    • (2005) Bergey's Manual of Systematic Bacteriology , pp. 161
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.3
  • 26
    • 13244268613 scopus 로고    scopus 로고
    • Notification that new names and new combina-tions have appeared in volume 54, part 5, of the IJSEM
    • PubMed
    • Notification that new names and new combina-tions have appeared in volume 54, part 5, of the IJSEM. Int J Syst Evol Microbiol 2005; 55:3-5. PubMed http://dx.doi.org/10.1099/ijs.0.63563-0
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 3-5
  • 27
    • 84881076217 scopus 로고    scopus 로고
    • Classification of Bacteria and Archaea in risk groups
    • BAuA. Classification of Bacteria and Archaea in risk groups. TRBA 2010; 466:93.
    • (2010) TRBA , vol.466 , pp. 93
  • 30
    • 84859982600 scopus 로고    scopus 로고
    • Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics
    • PubMed
    • Vaas LAI, Sikorski J, Michael VG, Göker M, Klenk HP. Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics. PLoS ONE 2012; 7:e34846. PubMed http://dx.doi.org/10.1371/journal.pone.0034846
    • (2012) PLoS ONE , vol.7
    • Vaas, L.A.I.1    Sikorski, J.2    Michael, V.G.3    Göker, M.4    Klenk, H.P.5
  • 32
    • 84880748400 scopus 로고    scopus 로고
    • Impacts of pr-10a overexpression at the molecular and the phenotypic level
    • PubMed
    • Vaas LAI, Marheine M, Sikorski JG, Göker M, Schumacher M. Impacts of pr-10a overexpression at the molecular and the phenotypic level. Int J Mol Sci 2013; 14:15141-15166. PubMed http://dx.doi.org/10.3390/ijms140715141
    • (2013) Int J Mol Sci , vol.14 , pp. 15141-15166
    • Vaas, L.A.I.1    Marheine, M.2    Sikorski, J.G.3    Göker, M.4    Schumacher, M.5
  • 33
    • 0037978119 scopus 로고    scopus 로고
    • Jannaschia helgolandensis gen. nov., sp. nov., a novel abundant member of the marine Roseobacter clade from the North Sea
    • PubMed
    • Wagner-Döbler I, Rheims H, Felske A, Pukall R, Tindall BJ. Jannaschia helgolandensis gen. nov., sp. nov., a novel abundant member of the marine Roseobacter clade from the North Sea. Int J Syst Evol Microbiol 2003; 53:731-738. PubMed http://dx.doi.org/10.1099/ijs.0.02377-0
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 731-738
    • Wagner-Döbler, I.1    Rheims, H.2    Felske, A.3    Pukall, R.4    Tindall, B.J.5
  • 34
    • 0030826790 scopus 로고    scopus 로고
    • Octadecabacter arcticus gen. nov., sp. nov., and Octadecabacter antarcticus gen. nov., sp. nov., non-pigmented, psychrophilic gas vacuolate bacteria from polar sea ice and water
    • Gosink JJ, Herwig RP, Staley JT. Octadecabacter arcticus gen. nov., sp. nov., and Octadecabacter antarcticus gen. nov., sp. nov., non-pigmented, psychrophilic gas vacuolate bacteria from polar sea ice and water. Syst Appl Microbiol 1997; 20:356-365. http://dx.doi.org/10.1016/S0723-2020(97)80003-3
    • (1997) Syst Appl Microbiol , vol.20 , pp. 356-365
    • Gosink, J.J.1    Herwig, R.P.2    Staley, J.T.3
  • 35
    • 0028914833 scopus 로고
    • Roseobacter algicola sp. nov., a new marine bac-terium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima
    • PubMed
    • Lafay B, Ruimy R, Rasch de Traubenberg C, Breittmeyer V, Gauthier MJ, Christen R. Roseobacter algicola sp. nov., a new marine bac-terium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima. Int J Syst Bacteriol 1995; 45:290-296. PubMed http://dx.doi.org/10.1099/00207713-45-2-290
    • (1995) Int J Syst Bacteriol , vol.45 , pp. 290-296
    • Lafay, B.1    Ruimy, R.2    Rasch de Traubenberg, C.3    Breittmeyer, V.4    Gauthier, M.J.5    Christen, R.6
  • 37
    • 0033951810 scopus 로고    scopus 로고
    • Staleya guttiformis gen. nov., sp. nov. a-3-Proteobacteria from hypersaline, heliothermal and meromictic Antarc-tic Ekho lake
    • PubMed
    • Labrenz M, Tindall BJ, Lawson PA, Collins MD, Schumann P, Hirsch P. Staleya guttiformis gen. nov., sp. nov. a-3-Proteobacteria from hypersaline, heliothermal and meromictic Antarc-tic Ekho lake. Int J Syst Evol Microbiol 2000; 50:303-313. PubMed http://dx.doi.org/10.1099/00207713-50-1-303
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 303-313
    • Labrenz, M.1    Tindall, B.J.2    Lawson, P.A.3    Collins, M.D.4    Schumann, P.5    Hirsch, P.6
  • 39
    • 84988856362 scopus 로고    scopus 로고
    • List of growth media used at the DSMZ: http://www.dmsz.de/catalogues/cataloque-microorganisms/culture-technology/list-of-media-for-microorganisms.html.
  • 41
    • 79958220279 scopus 로고    scopus 로고
    • Phylogeny and compatibility: plasmid classification in the genomics era
    • PubMed
    • Petersen J. Phylogeny and compatibility: plasmid classification in the genomics era. Arch Microbiol 2011; 193:313-321. PubMed
    • (2011) Arch Microbiol , vol.193 , pp. 313-321
    • Petersen, J.1
  • 42
    • 79952164212 scopus 로고    scopus 로고
    • Origin and evolution of a novel DnaA-like plasmid replication type in Rhodobacterales
    • PubMed
    • Petersen J, Brinkmann H, Berger M, Brinkhoff T, Päuker O, Pradella S. Origin and evolution of a novel DnaA-like plasmid replication type in Rhodobacterales. Mol Biol Evol 2011; 28:1229-1240. PubMed http://dx.doi.org/10.1093/molbev/msq310
    • (2011) Mol Biol Evol , vol.28 , pp. 1229-1240
    • Petersen, J.1    Brinkmann, H.2    Berger, M.3    Brinkhoff, T.4    Päuker, O.5    Pradella, S.6
  • 43
    • 1842456892 scopus 로고    scopus 로고
    • The versatile bacterial type IV secretion systems
    • PubMed
    • Cascales E, Christie PJ. The versatile bacterial type IV secretion systems. Nat Rev Microbiol 2003; 1:137-149. PubMed http://dx.doi.org/10.1038/nrmicro753
    • (2003) Nat Rev Microbiol , vol.1 , pp. 137-149
    • Cascales, E.1    Christie, P.J.2
  • 44
    • 84870180587 scopus 로고    scopus 로고
    • The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity
    • PubMed
    • Westra ER, Swarts DC, Staals RH, Jore MM, Brouns SJ, van der Oost J. The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity. Annu Rev Genet 2012; 46:311-339. PubMed http://dx.doi.org/10.1146/annurev-genet-110711-155447
    • (2012) Annu Rev Genet , vol.46 , pp. 311-339
    • Westra, E.R.1    Swarts, D.C.2    Staals, R.H.3    Jore, M.M.4    Brouns, S.J.5    van der Oost, J.6
  • 45
    • 62849125044 scopus 로고    scopus 로고
    • The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. nov., sp. nov
    • PubMed
    • Spring S, Lünsdorf H, Fuchs BM, Tindall BJ. The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. nov., sp. nov. PLoS ONE 2009; 4:e4866. PubMed http://dx.doi.org/10.1371/journal.pone.0004866
    • (2009) PLoS ONE , vol.4
    • Spring, S.1    Lünsdorf, H.2    Fuchs, B.M.3    Tindall, B.J.4
  • 46
    • 84878010207 scopus 로고    scopus 로고
    • Mixotrophic growth of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine Gammaproteobacteria is carbon-starvation inde-pendent and correlates with the cellular redox state
    • PubMed
    • Spring S, Riedel T. Mixotrophic growth of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine Gammaproteobacteria is carbon-starvation inde-pendent and correlates with the cellular redox state. BMC Microbiol 2013; 13:117. PubMed http://dx.doi.org/10.1186/1471-2180-13-117
    • (2013) BMC Microbiol , vol.13 , pp. 117
    • Spring, S.1    Riedel, T.2


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