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Volumn 15, Issue 4, 2016, Pages 486-494

Distribution of the species of Achromobacter in a French Cystic Fibrosis Centre and multilocus sequence typing analysis reveal the predominance of A. xylosoxidans and clonal relationships between some clinical and environmental isolates

Author keywords

Achromobacter spp.; Cystic fibrosis; Environment; Epidemiology; Genotyping; MLST; nNrdA

Indexed keywords

ACHROMOBACTER; ACHROMOBACTER AEGRIFACIENS; ACHROMOBACTER ANIMICUS; ACHROMOBACTER INSOLITUS; ACHROMOBACTER INSUAVIS; ACHROMOBACTER MUCICOLENS; ACHROMOBACTER SPIRITINUS; ACHROMOBACTER XYLOSOXIDANS; ADULT; ARTICLE; BACTERIAL COLONIZATION; BACTERIAL GENE; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CHILD; CLONAL VARIATION; CYSTIC FIBROSIS; GENOTYPE; HUMAN; MAJOR CLINICAL STUDY; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PHYLOGENETIC TREE; PREVALENCE; SPECIES DISTRIBUTION; SPUTUM ANALYSIS; SPUTUM CULTURE; ACHROMOBACTER DENITRIFICANS; CLASSIFICATION; ENVIRONMENTAL MICROBIOLOGY; FRANCE; GENETICS; GRAM NEGATIVE INFECTION; ISOLATION AND PURIFICATION; MICROBIOLOGY; MULTIGENE FAMILY; PROCEDURES; WHOLE GENOME SEQUENCING;

EID: 84953425806     PISSN: 15691993     EISSN: 18735010     Source Type: Journal    
DOI: 10.1016/j.jcf.2015.12.009     Document Type: Article
Times cited : (34)

References (28)
  • 1
    • 84915756275 scopus 로고    scopus 로고
    • Genotypic and phenotypic applications for the differentiation and species-level identification of Achromobacter for clinical diagnoses
    • e114356
    • [1] Gomila, M., Prince-Manzano, C., Svensson-Stadler, L., Busquets, A., Erhard, M., Martinez, D.L., et al. Genotypic and phenotypic applications for the differentiation and species-level identification of Achromobacter for clinical diagnoses. PLoS One, 9, 2014, e114356.
    • (2014) PLoS One , vol.9
    • Gomila, M.1    Prince-Manzano, C.2    Svensson-Stadler, L.3    Busquets, A.4    Erhard, M.5    Martinez, D.L.6
  • 2
    • 84864402339 scopus 로고    scopus 로고
    • Multilocus sequence analysis of isolates of Achromobacter from patients with cystic fibrosis reveals infecting species other than Achromobacter xylosoxidans
    • [2] Ridderberg, W., Wang, M., Norskov-Lauritsen, N., Multilocus sequence analysis of isolates of Achromobacter from patients with cystic fibrosis reveals infecting species other than Achromobacter xylosoxidans. J Clin Microbiol 50 (2012), 2688–2694.
    • (2012) J Clin Microbiol , vol.50 , pp. 2688-2694
    • Ridderberg, W.1    Wang, M.2    Norskov-Lauritsen, N.3
  • 3
    • 84865172689 scopus 로고    scopus 로고
    • A multilocus sequence typing scheme implies population structure and reveals several putative novel Achromobacter species
    • [3] Spilker, T., Vandamme, P., Lipuma, J.J., A multilocus sequence typing scheme implies population structure and reveals several putative novel Achromobacter species. J Clin Microbiol 50 (2012), 3010–3015.
    • (2012) J Clin Microbiol , vol.50 , pp. 3010-3015
    • Spilker, T.1    Vandamme, P.2    Lipuma, J.J.3
  • 4
    • 84874323437 scopus 로고    scopus 로고
    • Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples
    • [4] Vandamme, P., Moore, E.R., Cnockaert, M., De Brandt, E., Svensson-Stadler, L., Houf, K., et al. Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples. Syst Appl Microbiol 36 (2013), 1–10.
    • (2013) Syst Appl Microbiol , vol.36 , pp. 1-10
    • Vandamme, P.1    Moore, E.R.2    Cnockaert, M.3    De Brandt, E.4    Svensson-Stadler, L.5    Houf, K.6
  • 5
    • 84884203239 scopus 로고    scopus 로고
    • Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively
    • [5] Vandamme, P., Moore, E.R., Cnockaert, M., Peeters, C., Svensson-Stadler, L., Houf, K., et al. Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively. Syst Appl Microbiol 36 (2013), 474–482.
    • (2013) Syst Appl Microbiol , vol.36 , pp. 474-482
    • Vandamme, P.1    Moore, E.R.2    Cnockaert, M.3    Peeters, C.4    Svensson-Stadler, L.5    Houf, K.6
  • 6
    • 84876973969 scopus 로고    scopus 로고
    • Identification and distribution of Achromobacter species in cystic fibrosis
    • [6] Spilker, T., Vandamme, P., Lipuma, J.J., Identification and distribution of Achromobacter species in cystic fibrosis. J Cyst Fibros 12 (2013), 298–301.
    • (2013) J Cyst Fibros , vol.12 , pp. 298-301
    • Spilker, T.1    Vandamme, P.2    Lipuma, J.J.3
  • 7
    • 33645947318 scopus 로고    scopus 로고
    • 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory
    • [7] Bosshard, P.P., Zbinden, R., Abels, S., Boddinghaus, B., Altwegg, M., Bottger, E.C., 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory. J Clin Microbiol 44 (2006), 1359–1366.
    • (2006) J Clin Microbiol , vol.44 , pp. 1359-1366
    • Bosshard, P.P.1    Zbinden, R.2    Abels, S.3    Boddinghaus, B.4    Altwegg, M.5    Bottger, E.C.6
  • 8
    • 84862071299 scopus 로고    scopus 로고
    • Evaluation of the Bruker Biotyper and Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry systems for identification of nonfermenting Gram-negative bacilli isolated from cultures from cystic fibrosis patients
    • [8] Marko, D.C., Saffert, R.T., Cunningham, S.A., Hyman, J., Walsh, J., Arbefeville, S., et al. Evaluation of the Bruker Biotyper and Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry systems for identification of nonfermenting Gram-negative bacilli isolated from cultures from cystic fibrosis patients. J Clin Microbiol 50 (2012), 2034–2039.
    • (2012) J Clin Microbiol , vol.50 , pp. 2034-2039
    • Marko, D.C.1    Saffert, R.T.2    Cunningham, S.A.3    Hyman, J.4    Walsh, J.5    Arbefeville, S.6
  • 9
    • 84888251176 scopus 로고    scopus 로고
    • Detection of Achromobacter xylosoxidans in hospital, domestic, and outdoor environmental samples and comparison with human clinical isolates
    • [9] Amoureux, L., Bador, J., Fardeheb, S., Mabille, C., Couchot, C., Massip, C., et al. Detection of Achromobacter xylosoxidans in hospital, domestic, and outdoor environmental samples and comparison with human clinical isolates. Appl Environ Microbiol 79 (2013), 7142–7149.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 7142-7149
    • Amoureux, L.1    Bador, J.2    Fardeheb, S.3    Mabille, C.4    Couchot, C.5    Massip, C.6
  • 10
    • 84878017563 scopus 로고    scopus 로고
    • Epidemiology and resistance of Achromobacter xylosoxidans from cystic fibrosis patients in Dijon, Burgundy: first French data
    • [10] Amoureux, L., Bador, J., Siebor, E., Taillefumier, N., Fanton, A., Neuwirth, C., Epidemiology and resistance of Achromobacter xylosoxidans from cystic fibrosis patients in Dijon, Burgundy: first French data. J Cyst Fibros 12 (2013), 170–176.
    • (2013) J Cyst Fibros , vol.12 , pp. 170-176
    • Amoureux, L.1    Bador, J.2    Siebor, E.3    Taillefumier, N.4    Fanton, A.5    Neuwirth, C.6
  • 11
    • 44449177037 scopus 로고    scopus 로고
    • Characterization of a naturally occurring class D beta-lactamase from Achromobacter xylosoxidans
    • [11] Doi, Y., Poirel, L., Paterson, D.L., Nordmann, P., Characterization of a naturally occurring class D beta-lactamase from Achromobacter xylosoxidans. Antimicrob Agents Chemother 52 (2008), 1952–1956.
    • (2008) Antimicrob Agents Chemother , vol.52 , pp. 1952-1956
    • Doi, Y.1    Poirel, L.2    Paterson, D.L.3    Nordmann, P.4
  • 12
    • 79959256137 scopus 로고    scopus 로고
    • Identification of Achromobacter xylosoxidans by detection of the bla(OXA-114-like) gene intrinsic in this species
    • [12] Turton, J.F., Mustafa, N., Shah, J., Hampton, C.V., Pike, R., Kenna, D.T., Identification of Achromobacter xylosoxidans by detection of the bla(OXA-114-like) gene intrinsic in this species. Diagn Microbiol Infect Dis 70 (2011), 408–411.
    • (2011) Diagn Microbiol Infect Dis , vol.70 , pp. 408-411
    • Turton, J.F.1    Mustafa, N.2    Shah, J.3    Hampton, C.V.4    Pike, R.5    Kenna, D.T.6
  • 13
    • 84878522882 scopus 로고    scopus 로고
    • Molecular characterization of Achromobacter isolates from cystic fibrosis and non-cystic fibrosis patients in Madrid, Spain
    • [13] Barrado, L., Branas, P., Orellana, M.A., Martinez, M.T., Garcia, G., Otero, J.R., et al. Molecular characterization of Achromobacter isolates from cystic fibrosis and non-cystic fibrosis patients in Madrid, Spain. J Clin Microbiol 51 (2013), 1927–1930.
    • (2013) J Clin Microbiol , vol.51 , pp. 1927-1930
    • Barrado, L.1    Branas, P.2    Orellana, M.A.3    Martinez, M.T.4    Garcia, G.5    Otero, J.R.6
  • 14
    • 84979148214 scopus 로고    scopus 로고
    • Use of nrdA gene sequence clustering to estimate the prevalence of different Achromobacter species among cystic fibrosis patients in the UK
    • [14] Coward, A., Kenna, D.T., Perry, C., Martin, K., Doumith, M., Turton, J.F., Use of nrdA gene sequence clustering to estimate the prevalence of different Achromobacter species among cystic fibrosis patients in the UK. J Cyst Fibros, 2015.
    • (2015) J Cyst Fibros
    • Coward, A.1    Kenna, D.T.2    Perry, C.3    Martin, K.4    Doumith, M.5    Turton, J.F.6
  • 15
  • 16
    • 84875255868 scopus 로고    scopus 로고
    • Pathogen typing in the genomics era: MLST and the future of molecular epidemiology
    • [16] Perez-Losada, M., Cabezas, P., Castro-Nallar, E., Crandall, K.A., Pathogen typing in the genomics era: MLST and the future of molecular epidemiology. Infect Genet Evol 16 (2013), 38–53.
    • (2013) Infect Genet Evol , vol.16 , pp. 38-53
    • Perez-Losada, M.1    Cabezas, P.2    Castro-Nallar, E.3    Crandall, K.A.4
  • 18
    • 80053480074 scopus 로고    scopus 로고
    • Achromobacter xylosoxidans: characterization of strains in Brazilian cystic fibrosis patients
    • [18] Pereira, R.H., Carvalho-Assef, A.P., Albano, R.M., Folescu, T.W., Jones, M.C., Leao, R.S., et al. Achromobacter xylosoxidans: characterization of strains in Brazilian cystic fibrosis patients. J Clin Microbiol 49 (2011), 3649–3651.
    • (2011) J Clin Microbiol , vol.49 , pp. 3649-3651
    • Pereira, R.H.1    Carvalho-Assef, A.P.2    Albano, R.M.3    Folescu, T.W.4    Jones, M.C.5    Leao, R.S.6
  • 19
    • 0024444791 scopus 로고
    • Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA
    • [19] Edwards, U., Rogall, T., Blocker, H., Emde, M., Bottger, E.C., Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17 (1989), 7843–7853.
    • (1989) Nucleic Acids Res , vol.17 , pp. 7843-7853
    • Edwards, U.1    Rogall, T.2    Blocker, H.3    Emde, M.4    Bottger, E.C.5
  • 20
    • 0029134774 scopus 로고
    • Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing
    • [20] Tenover, F.C., Arbeit, R.D., Goering, R.V., Mickelsen, P.A., Murray, B.E., Persing, D.H., et al. Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J Clin Microbiol 33 (1995), 2233–2239.
    • (1995) J Clin Microbiol , vol.33 , pp. 2233-2239
    • Tenover, F.C.1    Arbeit, R.D.2    Goering, R.V.3    Mickelsen, P.A.4    Murray, B.E.5    Persing, D.H.6
  • 21
    • 78650827616 scopus 로고    scopus 로고
    • BIGSdb: scalable analysis of bacterial genome variation at the population level
    • [21] Jolley, K.A., Maiden, M.C., BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinf, 11, 2010, 595.
    • (2010) BMC Bioinf , vol.11 , pp. 595
    • Jolley, K.A.1    Maiden, M.C.2
  • 22
    • 84926616177 scopus 로고    scopus 로고
    • Presence of OXA-type enzymes in Achromobacter insuavis and A. dolens
    • [22] Traglia, G., Papalia, M., Almuzara, M., Gutkind, G., Centron, D., Vay, C., et al. Presence of OXA-type enzymes in Achromobacter insuavis and A. dolens. Curr Microbiol 69 (2014), 501–506.
    • (2014) Curr Microbiol , vol.69 , pp. 501-506
    • Traglia, G.1    Papalia, M.2    Almuzara, M.3    Gutkind, G.4    Centron, D.5    Vay, C.6
  • 23
    • 81455158927 scopus 로고    scopus 로고
    • Marked increase in incidence of Achromobacter xylosoxidans infections caused by sporadic acquisition from the environment
    • [23] Ridderberg, W., Bendstrup, K.E., Olesen, H.V., Jensen-Fangel, S., Nørskov-Lauritsen, N., Marked increase in incidence of Achromobacter xylosoxidans infections caused by sporadic acquisition from the environment. J Cyst Fibros 10 (2011), 466–469.
    • (2011) J Cyst Fibros , vol.10 , pp. 466-469
    • Ridderberg, W.1    Bendstrup, K.E.2    Olesen, H.V.3    Jensen-Fangel, S.4    Nørskov-Lauritsen, N.5
  • 24
    • 84872018509 scopus 로고    scopus 로고
    • Innate aminoglycoside resistance of Achromobacter xylosoxidans is due to AxyXY-OprZ, an RND-type multidrug efflux pump
    • [24] Bador, J., Amoureux, L., Blanc, E., Neuwirth, C., Innate aminoglycoside resistance of Achromobacter xylosoxidans is due to AxyXY-OprZ, an RND-type multidrug efflux pump. Antimicrob Agents Chemother 57 (2013), 603–605.
    • (2013) Antimicrob Agents Chemother , vol.57 , pp. 603-605
    • Bador, J.1    Amoureux, L.2    Blanc, E.3    Neuwirth, C.4
  • 27
    • 84881513008 scopus 로고    scopus 로고
    • Clonal dissemination, emergence of mutator lineages and antibiotic resistance evolution in Pseudomonas aeruginosa cystic fibrosis chronic lung infection
    • e71001
    • [27] Lopez-Causape, C., Rojo-Molinero, E., Mulet, X., Cabot, G., Moya, B., Figuerola, J., et al. Clonal dissemination, emergence of mutator lineages and antibiotic resistance evolution in Pseudomonas aeruginosa cystic fibrosis chronic lung infection. PLoS One, 8, 2013, e71001.
    • (2013) PLoS One , vol.8
    • Lopez-Causape, C.1    Rojo-Molinero, E.2    Mulet, X.3    Cabot, G.4    Moya, B.5    Figuerola, J.6
  • 28
    • 84921725917 scopus 로고    scopus 로고
    • Development of a multiple-locus variable-number tandem-repeat typing scheme for genetic fingerprinting of Burkholderia cenocepacia and application to nationwide epidemiological analysis
    • [28] Segonds, C., Thouverez, M., Barthe, A., Bossuet-Greif, N., Tisseyre, L., Plesiat, P., et al. Development of a multiple-locus variable-number tandem-repeat typing scheme for genetic fingerprinting of Burkholderia cenocepacia and application to nationwide epidemiological analysis. J Clin Microbiol 53 (2015), 398–409.
    • (2015) J Clin Microbiol , vol.53 , pp. 398-409
    • Segonds, C.1    Thouverez, M.2    Barthe, A.3    Bossuet-Greif, N.4    Tisseyre, L.5    Plesiat, P.6


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