A Multilocus sequence typing scheme implies population structure and reveals several putative novel achromobacter species

Journal of Clinical Microbiology

Volumn 50, Issue 9, 2012, Pages 3010-3015

  Spilker, Theodore ^a   Vandamme, Peter ^b   LiPuma, John J ^a  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^b GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

ACHROMOBACTER; ALLELE; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; BORDETELLA; BURKHOLDERIA; COMPUTER MODEL; CUPRIAVIDUS; CYSTIC FIBROSIS; DNA SEQUENCE; GENE LINKAGE DISEQUILIBRIUM; GENETIC ASSOCIATION; GENETIC VARIABILITY; GENOME ANALYSIS; HERMINIIMONAS; HUMAN; JANTHINOBACTERIUM; METHYLIBIUM; MULTILOCUS SEQUENCE TYPING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; POLYMORPHIC LOCUS; POPULATION GENETIC STRUCTURE; PRIORITY JOURNAL; PROTEOBACTERIA; RALSTONIA;

ACHROMOBACTER; CLUSTER ANALYSIS; DNA PRIMERS; DNA, BACTERIAL; GENETIC VARIATION; GRAM-NEGATIVE BACTERIAL INFECTIONS; HUMANS; MOLECULAR EPIDEMIOLOGY; MULTILOCUS SEQUENCE TYPING;

EID: 84865172689     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00814-12     Document Type: Article

References (17)

1. Aisenberg G, Rolston KV, Safdar A. 2004. Bacteremia caused by Achromobacter and Alcaligenes species in 46 patients with cancer (1989-2003). Cancer 101:2134-2140. (Pubitemid 39425391)
2. Brisse S, et al. 2002. Comparative evaluation of the BD Phoenix and VITEK 2 automated instruments for identification of isolates of the Burkholderia cepacia complex. J. Clin. Microbiol. 40:1743-1748. (Pubitemid 34493152)
3. Coenye T, Spilker T, Martin A, LiPuma JJ. 2002. Comparative assessment of genotyping methods for epidemiologic study of Burkholderia cepacia genomovar III. J. Clin. Microbiol. 40:3300-3307. (Pubitemid 34977445)
4. Coenye T, et al. 2003. Kerstersia gyiorum gen. nov., sp. nov., a novel Alcaligenes faecalis-like organism isolated from human clinical samples, and reclassification of Alcaligenes denitrificans Ruger and Tan 1983 as Achromobacter denitrificans comb. nov. Int. J. Syst. Evol. Microbiol. 53:1825-1831. (Pubitemid 37483839)
5. Coenye T, Vancanneyt M, Falsen E, Swings J, Vandamme P. 2003. Achromobacter insolitus sp. nov. and Achromobacter spanius sp. nov., from human clinical samples. Int. J. Syst. Evol. Microbiol. 53:1819-1824. (Pubitemid 37483838)
6. Cooper VS, Vohr SH, Wrocklage SC, Hatcher PJ. 2010. Why genes evolve faster on secondary chromosomes in bacteria. PLoS Comput. Biol. 6:e1000732.
7. Gomila M, et al. 2011. Achromobacter marplatensis sp. nov., isolated from a pentachlorophenol-contaminated soil. Int. J. Syst. Evol. Microbiol. 61:2231-2237.
8. Kaiser S, Biehler K, Jonas D. 2009. A Stenotrophomonas maltophilia multilocus sequence typing scheme for inferring population structure. J. Bacteriol. 191:2934-2943.
9. Kiredjian M, Holmes B, Kersters K, Guilvout I, De Ley J. 1986. Alcaligenes piechaudii, a new species from human clinical specimens and the environment. Int. J. Syst. Evol. Microbiol. 36:282-287. (Pubitemid 16111535)
10. LiPuma JJ. 2010. The changing microbial epidemiology in cystic fibrosis. Clin. Microbiol. Rev. 23:299-323.
11. Liu L, et al. 2002. Ribosomal DNA-directed PCR for identification of Achromobacter (Alcaligenes) xylosoxidans recovered from sputum samples from cystic fibrosis patients. J. Clin. Microbiol. 40:1210-1213. (Pubitemid 34279877)
12. Oh JY, Shin YJ, Wee WR. 2005. A case of epidemic keratoconjunctivitis complicated by Alcaligenes xylosoxidans infection. Korean J. Ophthalmol. 19:233-234.
13. Palys T, Nakamura LK, Cohan FM. 1997. Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. Int. J. Syst. Bacteriol. 47:1145-1156. (Pubitemid 27441246)
14. Robert PY, et al. 2008. Alcaligenes xylosoxidans endophthalmitis following phacoemulsification and intraocular lens implantation. Ophthalmic Surg. Lasers Imaging 39:500-504.
15. Rønne Hansen C, Pressler T, Høiby N, Gormsen M. 2006. Chronic infection with Achromobacter xylosoxidans in cystic fibrosis patients; a retrospective case control study. J. Cyst. Fibros. 5:245-251. (Pubitemid 44824860)
16. Yabuuchi E, Kawamura Y, Kosako Y, Ezaki T. 1998. Emendation of genus Achromobacter and Achromobacter xylosoxidans (Yabuuchi and Yano) and proposal of Achromobacter ruhlandii (Packer and Vishniac) comb. nov., Achromobacter piechaudii (Kiredjian et al.) comb. nov., and Achromobacter xylosoxidans subsp. denitrificans (Ruger and Tan) comb. nov. Microbiol. Immunol. 42:429-438.
17. Yabuuchi E, Yano I. 1981. Achromobacter gen. nov. and Achromobacter xylosoxidans (ex Yabuuchi and Ohyama 1971) nom. rev. Int. J. Syst. Evol. Microbiol. 31:477-478. (Pubitemid 12210070)