메뉴 건너뛰기




Volumn 16, Issue 1, 2015, Pages

Comparative genomics of Pseudomonas fluorescens subclade III strains from human lungs

Author keywords

Cystic fibrosis; Efflux pumps; Genomics; Human; Lung; Metal; Pseudomonas fluorescens

Indexed keywords

GENOMIC DNA; BACTERIAL SECRETION SYSTEM; METAL;

EID: 84952876173     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-2261-2     Document Type: Article
Times cited : (15)

References (86)
  • 1
    • 84907716417 scopus 로고    scopus 로고
    • Microbiology, genomics, and clinical significance of the Pseudomonas fluorescens species complex, an unappreciated colonizer of humans
    • Scales BS, Dickson RP, LiPuma JJ, Huffnagle GB. Microbiology, genomics, and clinical significance of the Pseudomonas fluorescens species complex, an unappreciated colonizer of humans. Clin Microbiol Rev. 2014;27(4):927-48. doi: 10.1128/CMR.00044-14.
    • (2014) Clin Microbiol Rev , vol.27 , Issue.4 , pp. 927-948
    • Scales, B.S.1    Dickson, R.P.2    LiPuma, J.J.3    Huffnagle, G.B.4
  • 2
    • 67649653746 scopus 로고    scopus 로고
    • Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens
    • Silby MW, Cerdeno-Tarraga AM, Vernikos GS, Giddens SR, Jackson RW, Preston GM, et al. Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biol. 2009;10(5):R51. doi: 10.1186/gb-2009-10-5-r51.
    • (2009) Genome Biol , vol.10 , Issue.5 , pp. R51
    • Silby, M.W.1    Cerdeno-Tarraga, A.M.2    Vernikos, G.S.3    Giddens, S.R.4    Jackson, R.W.5    Preston, G.M.6
  • 3
    • 84864591224 scopus 로고    scopus 로고
    • Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions
    • Loper JE, Hassan KA, Mavrodi DV, Davis 2nd EW, Lim CK, Shaffer BT, et al. Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions. PLoS Genet. 2012;8(7):e1002784. doi: 10.1371/journal.pgen.1002784.
    • (2012) PLoS Genet , vol.8 , Issue.7 , pp. e1002784
    • Loper, J.E.1    Hassan, K.A.2    Mavrodi, D.V.3    Davis, E.W.4    Lim, C.K.5    Shaffer, B.T.6
  • 4
    • 77955516907 scopus 로고    scopus 로고
    • DNA sequence-based analysis of the Pseudomonas species
    • Mulet M, Lalucat J, Garcia-Valdes E. DNA sequence-based analysis of the Pseudomonas species. Environ Microbiol. 2010;12(6):1513-30. doi: 10.1111/j.1462-2920.2010.02181.x.
    • (2010) Environ Microbiol , vol.12 , Issue.6 , pp. 1513-1530
    • Mulet, M.1    Lalucat, J.2    Garcia-Valdes, E.3
  • 6
    • 77951756282 scopus 로고    scopus 로고
    • Effect of temperature on the shift of Pseudomonas fluorescens from an environmental microorganism to a potential human pathogen
    • Donnarumma G, Buommino E, Fusco A, Paoletti I, Auricchio L, Tufano MA. Effect of temperature on the shift of Pseudomonas fluorescens from an environmental microorganism to a potential human pathogen. Int J Immunopathol Pharmacol. 2010;23(1):227-34.
    • (2010) Int J Immunopathol Pharmacol , vol.23 , Issue.1 , pp. 227-234
    • Donnarumma, G.1    Buommino, E.2    Fusco, A.3    Paoletti, I.4    Auricchio, L.5    Tufano, M.A.6
  • 8
    • 84866669354 scopus 로고    scopus 로고
    • Virulence of the Pseudomonas fluorescens clinical strain MFN1032 towards Dictyostelium discoideum and macrophages in relation with type III secretion system
    • Sperandio D, Decoin V, Latour X, Mijouin L, Hillion M, Feuilloley MG, et al. Virulence of the Pseudomonas fluorescens clinical strain MFN1032 towards Dictyostelium discoideum and macrophages in relation with type III secretion system. BMC Microbiol. 2012;12:223. doi: 10.1186/1471-2180-12-223.
    • (2012) BMC Microbiol. , vol.12 , pp. 223
    • Sperandio, D.1    Decoin, V.2    Latour, X.3    Mijouin, L.4    Hillion, M.5    Feuilloley, M.G.6
  • 9
    • 77955300028 scopus 로고    scopus 로고
    • The clinical Pseudomonas fluorescens MFN1032 strain exerts a cytotoxic effect on epithelial intestinal cells and induces Interleukin-8 via the AP-1 signaling pathway
    • Madi A, Lakhdari O, Blottiere HM, Guyard-Nicodeme M, Le Roux K, Groboillot A, et al. The clinical Pseudomonas fluorescens MFN1032 strain exerts a cytotoxic effect on epithelial intestinal cells and induces Interleukin-8 via the AP-1 signaling pathway. BMC Microbiol. 2010;10:215. doi: 10.1186/1471-2180-10-215.
    • (2010) BMC Microbiol. , vol.10 , pp. 215
    • Madi, A.1    Lakhdari, O.2    Blottiere, H.M.3    Guyard-Nicodeme, M.4    Roux, K.5    Groboillot, A.6
  • 10
    • 82055164421 scopus 로고    scopus 로고
    • Pseudomonas fluorescens alters epithelial permeability and translocates across Caco-2/TC7 intestinal cells
    • Madi A, Svinareff P, Orange N, Feuilloley MG, Connil N. Pseudomonas fluorescens alters epithelial permeability and translocates across Caco-2/TC7 intestinal cells. Gut Pathog. 2010;2(1):16. doi: 10.1186/1757-4749-2-16.
    • (2010) Gut Pathog , vol.2 , Issue.1 , pp. 16
    • Madi, A.1    Svinareff, P.2    Orange, N.3    Feuilloley, M.G.4    Connil, N.5
  • 11
    • 77951108641 scopus 로고    scopus 로고
    • Cell-associated hemolysis activity in the clinical strain of Pseudomonas fluorescens MFN1032
    • Sperandio D, Rossignol G, Guerillon J, Connil N, Orange N, Feuilloley MG, et al. Cell-associated hemolysis activity in the clinical strain of Pseudomonas fluorescens MFN1032. BMC Microbiol. 2010;10:124. doi: 10.1186/1471-2180-10-124.
    • (2010) BMC Microbiol. , vol.10 , pp. 124
    • Sperandio, D.1    Rossignol, G.2    Guerillon, J.3    Connil, N.4    Orange, N.5    Feuilloley, M.G.6
  • 12
    • 84901320562 scopus 로고    scopus 로고
    • Changes in the lung microbiome following lung transplantation include the emergence of two distinct Pseudomonas species with distinct clinical associations
    • Dickson RP, Erb-Downward JR, Freeman CM, Walker N, Scales BS, Beck JM, et al. Changes in the lung microbiome following lung transplantation include the emergence of two distinct Pseudomonas species with distinct clinical associations. PLoS One. 2014;9(5):e97214. doi: 10.1371/journal.pone.0097214.
    • (2014) PLoS One , vol.9 , Issue.5 , pp. e97214
    • Dickson, R.P.1    Erb-Downward, J.R.2    Freeman, C.M.3    Walker, N.4    Scales, B.S.5    Beck, J.M.6
  • 15
    • 84886012945 scopus 로고    scopus 로고
    • The genome of Pseudomonas fluorescens strain R124 demonstrates phenotypic adaptation to the mineral environment
    • Barton MD, Petronio M, Giarrizzo JG, Bowling BV, Barton HA. The genome of Pseudomonas fluorescens strain R124 demonstrates phenotypic adaptation to the mineral environment. J Bacteriol. 2013;195(21):4793-803. doi: 10.1128/JB.00825-13.
    • (2013) J Bacteriol , vol.195 , Issue.21 , pp. 4793-4803
    • Barton, M.D.1    Petronio, M.2    Giarrizzo, J.G.3    Bowling, B.V.4    Barton, H.A.5
  • 16
    • 84893511241 scopus 로고    scopus 로고
    • Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
    • Kim M, Oh HS, Park SC, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol. 2014;64(Pt 2):346-51. doi: 10.1099/ijs.0.059774-0.
    • (2014) Int J Syst Evol Microbiol , vol.64 , pp. 346-351
    • Kim, M.1    Oh, H.S.2    Park, S.C.3    Chun, J.4
  • 18
    • 0024095094 scopus 로고
    • Specificity of pyoverdine-mediated iron uptake among fluorescent Pseudomonas strains
    • Hohnadel D, Meyer JM. Specificity of pyoverdine-mediated iron uptake among fluorescent Pseudomonas strains. J Bacteriol. 1988;170(10):4865-73.
    • (1988) J Bacteriol , vol.170 , Issue.10 , pp. 4865-4873
    • Hohnadel, D.1    Meyer, J.M.2
  • 19
    • 59549100941 scopus 로고    scopus 로고
    • Iron uptake regulation in Pseudomonas aeruginosa
    • Cornelis P, Matthijs S, Van Oeffelen L. Iron uptake regulation in Pseudomonas aeruginosa. Biometals. 2009;22(1):15-22. doi: 10.1007/s10534-008-9193-0.
    • (2009) Biometals , vol.22 , Issue.1 , pp. 15-22
    • Cornelis, P.1    Matthijs, S.2    Oeffelen, L.3
  • 20
    • 9244234392 scopus 로고    scopus 로고
    • Bacterial iron sources: from siderophores to hemophores
    • Wandersman C, Delepelaire P. Bacterial iron sources: from siderophores to hemophores. Annu Rev Microbiol. 2004;58:611-47. doi: 10.1146/annurev.micro.58.030603.123811.
    • (2004) Annu Rev Microbiol. , vol.58 , pp. 611-647
    • Wandersman, C.1    Delepelaire, P.2
  • 21
    • 0026094746 scopus 로고
    • Copper resistance in Pseudomonas syringae mediated by periplasmic and outer membrane proteins
    • Cha JS, Cooksey DA. Copper resistance in Pseudomonas syringae mediated by periplasmic and outer membrane proteins. Proc Natl Acad Sci U S A. 1991;88(20):8915-9.
    • (1991) Proc Natl Acad Sci U S A , vol.88 , Issue.20 , pp. 8915-8919
    • Cha, J.S.1    Cooksey, D.A.2
  • 22
    • 0029016714 scopus 로고
    • The cobalt, zinc, and cadmium efflux system CzcABC from Alcaligenes eutrophus functions as a cation-proton antiporter in Escherichia coli
    • Nies DH. The cobalt, zinc, and cadmium efflux system CzcABC from Alcaligenes eutrophus functions as a cation-proton antiporter in Escherichia coli. J Bacteriol. 1995;177(10):2707-12.
    • (1995) J Bacteriol , vol.177 , Issue.10 , pp. 2707-2712
    • Nies, D.H.1
  • 23
    • 0037565061 scopus 로고    scopus 로고
    • Efflux-mediated heavy metal resistance in prokaryotes
    • Nies DH. Efflux-mediated heavy metal resistance in prokaryotes. FEMS Microbiol Rev. 2003;27(2-3):313-39.
    • (2003) FEMS Microbiol Rev , vol.27 , Issue.2-3 , pp. 313-339
    • Nies, D.H.1
  • 24
    • 34347383571 scopus 로고    scopus 로고
    • A copper-activated two-component system interacts with zinc and imipenem resistance in Pseudomonas aeruginosa
    • Caille O, Rossier C, Perron K. A copper-activated two-component system interacts with zinc and imipenem resistance in Pseudomonas aeruginosa. J Bacteriol. 2007;189(13):4561-8. doi: 10.1128/JB.00095-07.
    • (2007) J Bacteriol , vol.189 , Issue.13 , pp. 4561-4568
    • Caille, O.1    Rossier, C.2    Perron, K.3
  • 25
    • 84901992360 scopus 로고    scopus 로고
    • Bacterial multidrug efflux transporters
    • Delmar JA, Su CC, Yu EW. Bacterial multidrug efflux transporters. Annu Rev Biophys. 2014;43:93-117. doi: 10.1146/annurev-biophys-051013-022855.
    • (2014) Annu Rev Biophys. , vol.43 , pp. 93-117
    • Delmar, J.A.1    Su, C.C.2    Yu, E.W.3
  • 26
    • 0032884944 scopus 로고    scopus 로고
    • Identification of a gene cluster, czr, involved in cadmium and zinc resistance in Pseudomonas aeruginosa
    • Hassan MT, van der Lelie D, Springael D, Romling U, Ahmed N, Mergeay M. Identification of a gene cluster, czr, involved in cadmium and zinc resistance in Pseudomonas aeruginosa. Gene. 1999;238(2):417-25.
    • (1999) Gene , vol.238 , Issue.2 , pp. 417-425
    • Hassan, M.T.1    Lelie, D.2    Springael, D.3    Romling, U.4    Ahmed, N.5    Mergeay, M.6
  • 27
    • 0033543578 scopus 로고    scopus 로고
    • Energetics and topology of CzcA, a cation/proton antiporter of the resistance-nodulation-cell division protein family
    • Goldberg M, Pribyl T, Juhnke S, Nies DH. Energetics and topology of CzcA, a cation/proton antiporter of the resistance-nodulation-cell division protein family. J Biol Chem. 1999;274(37):26065-70.
    • (1999) J Biol Chem , vol.274 , Issue.37 , pp. 26065-26070
    • Goldberg, M.1    Pribyl, T.2    Juhnke, S.3    Nies, D.H.4
  • 28
    • 84892886126 scopus 로고    scopus 로고
    • Pfit is a structurally novel Crohn's disease-associated superantigen
    • Liu L, Chen H, Brecher MB, Li Z, Wei B, Nandi B, et al. Pfit is a structurally novel Crohn's disease-associated superantigen. PLoS Pathog. 2013;9(12):e1003837. doi: 10.1371/journal.ppat.1003837.
    • (2013) PLoS Pathog , vol.9 , Issue.12 , pp. e1003837
    • Liu, L.1    Chen, H.2    Brecher, M.B.3    Li, Z.4    Wei, B.5    Nandi, B.6
  • 29
    • 0036893658 scopus 로고    scopus 로고
    • Pseudomonas fluorescens encodes the Crohn's disease-associated I2 sequence and T-cell superantigen
    • Wei B, Huang T, Dalwadi H, Sutton CL, Bruckner D, Braun J. Pseudomonas fluorescens encodes the Crohn's disease-associated I2 sequence and T-cell superantigen. Infect Immun. 2002;70(12):6567-75.
    • (2002) Infect Immun , vol.70 , Issue.12 , pp. 6567-6575
    • Wei, B.1    Huang, T.2    Dalwadi, H.3    Sutton, C.L.4    Bruckner, D.5    Braun, J.6
  • 31
    • 0035019730 scopus 로고    scopus 로고
    • Type II, secretion and pathogenesis
    • Sandkvist M. Type II, secretion and pathogenesis. Infect Immun. 2001;69(6):3523-35. doi: 10.1128/IAI.69.6.3523-3535.2001.
    • (2001) Infect Immun , vol.69 , Issue.6 , pp. 3523-3535
    • Sandkvist, M.1
  • 32
    • 27844506497 scopus 로고    scopus 로고
    • Type II, secretion: a protein secretion system for all seasons
    • Cianciotto NP. Type II, secretion: a protein secretion system for all seasons. Trends Microbiol. 2005;13(12):581-8. doi: 10.1016/j.tim.2005.09.005.
    • (2005) Trends Microbiol , vol.13 , Issue.12 , pp. 581-588
    • Cianciotto, N.P.1
  • 33
    • 8844269404 scopus 로고    scopus 로고
    • The underlying mechanisms of type II protein secretion
    • Filloux A. The underlying mechanisms of type II protein secretion. Biochim Biophys Acta. 2004;1694(1-3):163-79. doi: 10.1016/j.bbamcr.2004.05.003.
    • (2004) Biochim Biophys Acta , vol.1694 , Issue.1-3 , pp. 163-179
    • Filloux, A.1
  • 34
    • 0036173113 scopus 로고    scopus 로고
    • A novel type II secretion system in Pseudomonas aeruginosa
    • Ball G, Durand E, Lazdunski A, Filloux A. A novel type II secretion system in Pseudomonas aeruginosa. Mol Microbiol. 2002;43(2):475-85.
    • (2002) Mol Microbiol , vol.43 , Issue.2 , pp. 475-485
    • Ball, G.1    Durand, E.2    Lazdunski, A.3    Filloux, A.4
  • 35
    • 0344211861 scopus 로고    scopus 로고
    • Identification of a novel Gsp-related pathway required for secretion of the manganese-oxidizing factor of Pseudomonas putida strain GB-1
    • De Vrind J, De Groot A, Brouwers GJ, Tommassen J, De Vrind-De Jong E. Identification of a novel Gsp-related pathway required for secretion of the manganese-oxidizing factor of Pseudomonas putida strain GB-1. Mol Microbiol. 2003;47(4):993-1006.
    • (2003) Mol Microbiol , vol.47 , Issue.4 , pp. 993-1006
    • Vrind, J.1    Groot, A.2    Brouwers, G.J.3    Tommassen, J.4    Jong, E.5
  • 36
    • 0037161811 scopus 로고    scopus 로고
    • Comparison of the genomes of two Xanthomonas pathogens with differing host specificities
    • da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, et al. Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature. 2002;417(6887):459-63. doi: 10.1038/417459a.
    • (2002) Nature , vol.417 , Issue.6887 , pp. 459-463
    • Silva, A.C.1    Ferro, J.A.2    Reinach, F.C.3    Farah, C.S.4    Furlan, L.R.5    Quaggio, R.B.6
  • 37
    • 0027434697 scopus 로고
    • Membrane traffic wardens and protein secretion in gram-negative bacteria
    • Salmond GP, Reeves PJ. Membrane traffic wardens and protein secretion in gram-negative bacteria. Trends Biochem Sci. 1993;18(1):7-12.
    • (1993) Trends Biochem Sci , vol.18 , Issue.1 , pp. 7-12
    • Salmond, G.P.1    Reeves, P.J.2
  • 38
    • 0022997655 scopus 로고
    • Gene cluster of Pseudomonas syringae pv. "phaseolicola" controls pathogenicity of bean plants and hypersensitivity of nonhost plants
    • Lindgren PB, Peet RC, Panopoulos NJ. Gene cluster of Pseudomonas syringae pv. "phaseolicola" controls pathogenicity of bean plants and hypersensitivity of nonhost plants. J Bacteriol. 1986;168(2):512-22.
    • (1986) J Bacteriol , vol.168 , Issue.2 , pp. 512-522
    • Lindgren, P.B.1    Peet, R.C.2    Panopoulos, N.J.3
  • 39
    • 84876807266 scopus 로고    scopus 로고
    • Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots
    • Marchi M, Boutin M, Gazengel K, Rispe C, Gauthier JP, Guillerm-Erckelboudt AY, et al. Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots. Environ Microbiol Rep. 2013;5(3):393-403. doi: 10.1111/1758-2229.12048.
    • (2013) Environ Microbiol Rep , vol.5 , Issue.3 , pp. 393-403
    • Marchi, M.1    Boutin, M.2    Gazengel, K.3    Rispe, C.4    Gauthier, J.P.5    Guillerm-Erckelboudt, A.Y.6
  • 40
    • 0035788450 scopus 로고    scopus 로고
    • Type III secretion in plant growth-promoting Pseudomonas fluorescens SBW25
    • Preston GM, Bertrand N, Rainey PB. Type III secretion in plant growth-promoting Pseudomonas fluorescens SBW25. Mol Microbiol. 2001;41(5):999-1014.
    • (2001) Mol Microbiol , vol.41 , Issue.5 , pp. 999-1014
    • Preston, G.M.1    Bertrand, N.2    Rainey, P.B.3
  • 41
    • 23844481118 scopus 로고    scopus 로고
    • The type III secretion system of biocontrol Pseudomonas fluorescens KD targets the phytopathogenic Chromista Pythium ultimum and promotes cucumber protection
    • Rezzonico F, Binder C, Defago G, Moenne-Loccoz Y. The type III secretion system of biocontrol Pseudomonas fluorescens KD targets the phytopathogenic Chromista Pythium ultimum and promotes cucumber protection. Mol Plant Microbe Interact. 2005;18(9):991-1001. doi: 10.1094/MPMI-18-0991.
    • (2005) Mol Plant Microbe Interact , vol.18 , Issue.9 , pp. 991-1001
    • Rezzonico, F.1    Binder, C.2    Defago, G.3    Moenne-Loccoz, Y.4
  • 43
    • 0037376783 scopus 로고    scopus 로고
    • Protein secretion systems of Pseudomonas aeruginosa and P fluorescens
    • Ma Q, Zhai Y, Schneider JC, Ramseier TM, Saier Jr MH. Protein secretion systems of Pseudomonas aeruginosa and P fluorescens. Biochim Biophys Acta. 2003;1611(1-2):223-33.
    • (2003) Biochim Biophys Acta , vol.1611 , Issue.1-2 , pp. 223-233
    • Ma, Q.1    Zhai, Y.2    Schneider, J.C.3    Ramseier, T.M.4    Saier, M.H.5
  • 44
    • 0033140434 scopus 로고    scopus 로고
    • Adaptation of Pseudomonas fluorescens to the plant rhizosphere
    • Rainey PB. Adaptation of Pseudomonas fluorescens to the plant rhizosphere. Environ Microbiol. 1999;1(3):243-57.
    • (1999) Environ Microbiol , vol.1 , Issue.3 , pp. 243-257
    • Rainey, P.B.1
  • 45
    • 0036405357 scopus 로고    scopus 로고
    • Type IV, pili and twitching motility
    • Mattick JS. Type IV, pili and twitching motility. Annu Rev Microbiol. 2002;56:289-314. doi: 10.1146/annurev.micro.56.012302.160938.
    • (2002) Annu Rev Microbiol. , vol.56 , pp. 289-314
    • Mattick, J.S.1
  • 46
    • 41949117894 scopus 로고    scopus 로고
    • Type IV pili: paradoxes in form and function
    • Craig L, Li J. Type IV pili: paradoxes in form and function. Curr Opin Struct Biol. 2008;18(2):267-77. doi: 10.1016/j.sbi.2007.12.009.
    • (2008) Curr Opin Struct Biol , vol.18 , Issue.2 , pp. 267-277
    • Craig, L.1    Li, J.2
  • 47
    • 0037377827 scopus 로고    scopus 로고
    • Microarray analysis of Pseudomonas aeruginosa quorum-sensing regulons: effects of growth phase and environment
    • Planet PJ, Kachlany SC, Fine DH, DeSalle R, Figurski DH. The Widespread Colonization Island of Actinobacillus actinomycetemcomitans. Nat Genet. 2003;34(2):193-8. doi: 10.1038/ng1154.
    • (2003) J Bacteriol , vol.185 , Issue.7 , pp. 2080-2095
    • Wagner, V.E.1    Bushnell, D.2    Passador, L.3    Brooks, A.I.4    Iglewski, B.H.5
  • 48
    • 0037378570 scopus 로고    scopus 로고
    • Identification, timing, and signal specificity of Pseudomonas aeruginosa quorum-controlled genes: a transcriptome analysis
    • Schuster M, Lostroh CP, Ogi T, Greenberg EP. Identification, timing, and signal specificity of Pseudomonas aeruginosa quorum-controlled genes: a transcriptome analysis. J Bacteriol. 2003;185(7):2066-79.
    • (2003) J Bacteriol , vol.185 , Issue.7 , pp. 2066-2079
    • Schuster, M.1    Lostroh, C.P.2    Ogi, T.3    Greenberg, E.P.4
  • 49
    • 34548488713 scopus 로고    scopus 로고
    • Protein secretion systems and adhesins: the molecular armory of Gram-negative pathogens
    • Gerlach RG, Hensel M. Protein secretion systems and adhesins: the molecular armory of Gram-negative pathogens. Int J Med Microbiol. 2007;297(6):401-15. doi: 10.1016/j.ijmm.2007.03.017.
    • (2007) Int J Med Microbiol , vol.297 , Issue.6 , pp. 401-415
    • Gerlach, R.G.1    Hensel, M.2
  • 50
    • 63049098068 scopus 로고    scopus 로고
    • Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources?
    • Boyer F, Fichant G, Berthod J, Vandenbrouck Y, Attree I. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009;10:104. doi: 10.1186/1471-2164-10-104.
    • (2009) BMC Genomics. , vol.10 , pp. 104
    • Boyer, F.1    Fichant, G.2    Berthod, J.3    Vandenbrouck, Y.4    Attree, I.5
  • 51
    • 79958154017 scopus 로고    scopus 로고
    • Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered
    • Barret M, Egan F, Fargier E, Morrissey JP, O'Gara F. Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology. 2011;157(Pt 6):1726-39. doi: 10.1099/mic.0.048645-0.
    • (2011) Microbiology , vol.157 , pp. 1726-1739
    • Barret, M.1    Egan, F.2    Fargier, E.3    Morrissey, J.P.4    O'Gara, F.5
  • 52
    • 40749126685 scopus 로고    scopus 로고
    • Molecular characterization of a functional type VI secretion system from a clinical isolate of Aeromonas hydrophila
    • Suarez G, Sierra JC, Sha J, Wang S, Erova TE, Fadl AA, et al. Molecular characterization of a functional type VI secretion system from a clinical isolate of Aeromonas hydrophila. Microb Pathog. 2008;44(4):344-61. doi: 10.1016/j.micpath.2007.10.005.
    • (2008) Microb Pathog , vol.44 , Issue.4 , pp. 344-361
    • Suarez, G.1    Sierra, J.C.2    Sha, J.3    Wang, S.4    Erova, T.E.5    Fadl, A.A.6
  • 53
    • 84855400936 scopus 로고    scopus 로고
    • VasH is a transcriptional regulator of the type VI secretion system functional in endemic and pandemic Vibrio cholerae
    • Kitaoka M, Miyata ST, Brooks TM, Unterweger D, Pukatzki S. VasH is a transcriptional regulator of the type VI secretion system functional in endemic and pandemic Vibrio cholerae. J Bacteriol. 2011;193(23):6471-82. doi: 10.1128/JB.05414-11.
    • (2011) J Bacteriol , vol.193 , Issue.23 , pp. 6471-6482
    • Kitaoka, M.1    Miyata, S.T.2    Brooks, T.M.3    Unterweger, D.4    Pukatzki, S.5
  • 54
    • 79955528849 scopus 로고    scopus 로고
    • Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins
    • Bernard CS, Brunet YR, Gavioli M, Lloubes R, Cascales E. Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins. J Bacteriol. 2011;193(9):2158-67. doi: 10.1128/JB.00029-11.
    • (2011) J Bacteriol , vol.193 , Issue.9 , pp. 2158-2167
    • Bernard, C.S.1    Brunet, Y.R.2    Gavioli, M.3    Lloubes, R.4    Cascales, E.5
  • 55
    • 34248578701 scopus 로고    scopus 로고
    • Structural basis of DNA recognition by the alternative sigma-factor, sigma54
    • Doucleff M, Pelton JG, Lee PS, Nixon BT, Wemmer DE. Structural basis of DNA recognition by the alternative sigma-factor, sigma54. J Mol Biol. 2007;369(4):1070-8. doi: 10.1016/j.jmb.2007.04.019.
    • (2007) J Mol Biol , vol.369 , Issue.4 , pp. 1070-1078
    • Doucleff, M.1    Pelton, J.G.2    Lee, P.S.3    Nixon, B.T.4    Wemmer, D.E.5
  • 56
    • 37349052036 scopus 로고    scopus 로고
    • Sigma factors in Pseudomonas aeruginosa
    • Potvin E, Sanschagrin F, Levesque RC. Sigma factors in Pseudomonas aeruginosa. FEMS Microbiol Rev. 2008;32(1):38-55. doi: 10.1111/j.1574-6976.2007.00092.x.
    • (2008) FEMS Microbiol Rev , vol.32 , Issue.1 , pp. 38-55
    • Potvin, E.1    Sanschagrin, F.2    Levesque, R.C.3
  • 57
    • 79551688546 scopus 로고    scopus 로고
    • Type VI secretion regulation: crosstalk and intracellular communication
    • Leung KY, Siame BA, Snowball H, Mok YK. Type VI secretion regulation: crosstalk and intracellular communication. Curr Opin Microbiol. 2011;14(1):9-15. doi: 10.1016/j.mib.2010.09.017.
    • (2011) Curr Opin Microbiol , vol.14 , Issue.1 , pp. 9-15
    • Leung, K.Y.1    Siame, B.A.2    Snowball, H.3    Mok, Y.K.4
  • 58
    • 84868351671 scopus 로고    scopus 로고
    • Thermal control of microbial development and virulence: molecular mechanisms of microbial temperature sensing
    • Shapiro RS, Cowen LE. Thermal control of microbial development and virulence: molecular mechanisms of microbial temperature sensing. MBio. 2012;3(5). doi: 10.1128/mBio.00238-12.
    • (2012) MBio. , vol.3 , Issue.5
    • Shapiro, R.S.1    Cowen, L.E.2
  • 59
    • 1542335656 scopus 로고    scopus 로고
    • CzcR-CzcS, a two-component system involved in heavy metal and carbapenem resistance in Pseudomonas aeruginosa
    • Perron K, Caille O, Rossier C, Van Delden C, Dumas JL, Kohler T. CzcR-CzcS, a two-component system involved in heavy metal and carbapenem resistance in Pseudomonas aeruginosa. J Biol Chem. 2004;279(10):8761-8. doi: 10.1074/jbc.M312080200.
    • (2004) J Biol Chem , vol.279 , Issue.10 , pp. 8761-8768
    • Perron, K.1    Caille, O.2    Rossier, C.3    Delden, C.4    Dumas, J.L.5    Kohler, T.6
  • 60
    • 33644903806 scopus 로고    scopus 로고
    • Role of the novel OprD family of porins in nutrient uptake in Pseudomonas aeruginosa
    • Tamber S, Ochs MM, Hancock RE. Role of the novel OprD family of porins in nutrient uptake in Pseudomonas aeruginosa. J Bacteriol. 2006;188(1):45-54. doi: 10.1128/JB.188.1.45-54.2006.
    • (2006) J Bacteriol , vol.188 , Issue.1 , pp. 45-54
    • Tamber, S.1    Ochs, M.M.2    Hancock, R.E.3
  • 61
    • 0035859870 scopus 로고    scopus 로고
    • A metallothionein containing a zinc finger within a four-metal cluster protects a bacterium from zinc toxicity
    • Blindauer CA, Harrison MD, Parkinson JA, Robinson AK, Cavet JS, Robinson NJ, et al. A metallothionein containing a zinc finger within a four-metal cluster protects a bacterium from zinc toxicity. Proc Natl Acad Sci U S A. 2001;98(17):9593-8. doi: 10.1073/pnas.171120098.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , Issue.17 , pp. 9593-9598
    • Blindauer, C.A.1    Harrison, M.D.2    Parkinson, J.A.3    Robinson, A.K.4    Cavet, J.S.5    Robinson, N.J.6
  • 62
    • 0033823391 scopus 로고    scopus 로고
    • Spatial patterns in antibiotic resistance among stream bacteria: effects of industrial pollution
    • McArthur JV, Tuckfield RC. Spatial patterns in antibiotic resistance among stream bacteria: effects of industrial pollution. Appl Environ Microbiol. 2000;66(9):3722-6.
    • (2000) Appl Environ Microbiol , vol.66 , Issue.9 , pp. 3722-3726
    • McArthur, J.V.1    Tuckfield, R.C.2
  • 63
    • 0031893154 scopus 로고    scopus 로고
    • The effect of longterm exposure to mercury on the bacterial community in marine sediment
    • Rasmussen LD, Sorensen SJ. The effect of longterm exposure to mercury on the bacterial community in marine sediment. Curr Microbiol. 1998;36(5):291-7.
    • (1998) Curr Microbiol , vol.36 , Issue.5 , pp. 291-297
    • Rasmussen, L.D.1    Sorensen, S.J.2
  • 65
    • 0033207021 scopus 로고    scopus 로고
    • Environmental and clinical isolates of Pseudomonas aeruginosa show pathogenic and biodegradative properties irrespective of their origin
    • Alonso A, Rojo F, Martinez JL. Environmental and clinical isolates of Pseudomonas aeruginosa show pathogenic and biodegradative properties irrespective of their origin. Environ Microbiol. 1999;1(5):421-30.
    • (1999) Environ Microbiol , vol.1 , Issue.5 , pp. 421-430
    • Alonso, A.1    Rojo, F.2    Martinez, J.L.3
  • 66
    • 0038153119 scopus 로고    scopus 로고
    • Conservation of genome content and virulence determinants among clinical and environmental isolates of Pseudomonas aeruginosa
    • Wolfgang MC, Kulasekara BR, Liang X, Boyd D, Wu K, Yang Q, et al. Conservation of genome content and virulence determinants among clinical and environmental isolates of Pseudomonas aeruginosa. Proc Natl Acad Sci U S A. 2003;100(14):8484-9. doi: 10.1073/pnas.0832438100.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , Issue.14 , pp. 8484-8489
    • Wolfgang, M.C.1    Kulasekara, B.R.2    Liang, X.3    Boyd, D.4    Wu, K.5    Yang, Q.6
  • 67
    • 84896102478 scopus 로고    scopus 로고
    • From the environment to the host: re-wiring of the transcriptome of Pseudomonas aeruginosa from 22 degrees C to 37 degrees C
    • Barbier M, Damron FH, Bielecki P, Suarez-Diez M, Puchalka J, Alberti S, et al. From the environment to the host: re-wiring of the transcriptome of Pseudomonas aeruginosa from 22 degrees C to 37 degrees C. PLoS One. 2014;9(2):e89941. doi: 10.1371/journal.pone.0089941.
    • (2014) PLoS One , vol.9 , Issue.2 , pp. e89941
    • Barbier, M.1    Damron, F.H.2    Bielecki, P.3    Suarez-Diez, M.4    Puchalka, J.5    Alberti, S.6
  • 68
    • 84942768040 scopus 로고    scopus 로고
    • Association of overexpression of efflux pump genes with antibiotic resistance in Pseudomonas aeruginosa strains clinically isolated from urinary tract infection patients
    • Shigemura K, Osawa K, Kato A, Tokimatsu I, Arakawa S, Shirakawa T, et al. Association of overexpression of efflux pump genes with antibiotic resistance in Pseudomonas aeruginosa strains clinically isolated from urinary tract infection patients. J Antibiot (Tokyo). 2015. doi: 10.1038/ja.2015.34.
    • (2015) J Antibiot (Tokyo)
    • Shigemura, K.1    Osawa, K.2    Kato, A.3    Tokimatsu, I.4    Arakawa, S.5    Shirakawa, T.6
  • 69
    • 0028134685 scopus 로고
    • Development of antibiotic resistance in Pseudomonas aeruginosa during two decades of antipseudomonal treatment at the Danish CF Center
    • Ciofu O, Giwercman B, Pedersen SS, Hoiby N. Development of antibiotic resistance in Pseudomonas aeruginosa during two decades of antipseudomonal treatment at the Danish CF Center. Apmis. 1994;102(9):674-80.
    • (1994) Apmis , vol.102 , Issue.9 , pp. 674-680
    • Ciofu, O.1    Giwercman, B.2    Pedersen, S.S.3    Hoiby, N.4
  • 70
    • 59349093827 scopus 로고    scopus 로고
    • Chromosomal mechanisms of aminoglycoside resistance in Pseudomonas aeruginosa isolates from cystic fibrosis patients
    • Islam S, Oh H, Jalal S, Karpati F, Ciofu O, Hoiby N, et al. Chromosomal mechanisms of aminoglycoside resistance in Pseudomonas aeruginosa isolates from cystic fibrosis patients. Clin Microbiol Infect. 2009;15(1):60-6. doi: 10.1111/j.1469-0691.2008.02097.x.
    • (2009) Clin Microbiol Infect , vol.15 , Issue.1 , pp. 60-66
    • Islam, S.1    Oh, H.2    Jalal, S.3    Karpati, F.4    Ciofu, O.5    Hoiby, N.6
  • 71
    • 0033999155 scopus 로고    scopus 로고
    • Molecular mechanisms of fluoroquinolone resistance in Pseudomonas aeruginosa isolates from cystic fibrosis patients
    • Jalal S, Ciofu O, Hoiby N, Gotoh N, Wretlind B. Molecular mechanisms of fluoroquinolone resistance in Pseudomonas aeruginosa isolates from cystic fibrosis patients. Antimicrob Agents Chemother. 2000;44(3):710-2.
    • (2000) Antimicrob Agents Chemother , vol.44 , Issue.3 , pp. 710-712
    • Jalal, S.1    Ciofu, O.2    Hoiby, N.3    Gotoh, N.4    Wretlind, B.5
  • 72
    • 79960923273 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa: all roads lead to resistance
    • Breidenstein EB, de la Fuente-Nunez C, Hancock RE. Pseudomonas aeruginosa: all roads lead to resistance. Trends Microbiol. 2011;19(8):419-26. doi: 10.1016/j.tim.2011.04.005.
    • (2011) Trends Microbiol , vol.19 , Issue.8 , pp. 419-426
    • Breidenstein, E.B.1    Fuente-Nunez, C.2    Hancock, R.E.3
  • 73
    • 0025869974 scopus 로고
    • Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA
    • Eden PA, Schmidt TM, Blakemore RP, Pace NR. Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA. Int J Syst Bacteriol. 1991;41(2):324-5.
    • (1991) Int J Syst Bacteriol , vol.41 , Issue.2 , pp. 324-325
    • Eden, P.A.1    Schmidt, T.M.2    Blakemore, R.P.3    Pace, N.R.4
  • 76
    • 84891804612 scopus 로고    scopus 로고
    • The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
    • Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, et al. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res. 2014;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226.
    • (2014) Nucleic Acids Res , vol.42 , Issue.Database issue , pp. D206-D214
    • Overbeek, R.1    Olson, R.2    Pusch, G.D.3    Olsen, G.J.4    Davis, J.J.5    Disz, T.6
  • 77
    • 84934441560 scopus 로고    scopus 로고
    • BLAST and FASTA similarity searching for multiple sequence alignment
    • Pearson WR. BLAST and FASTA similarity searching for multiple sequence alignment. Methods Mol Biol. 2014;1079:75-101. doi: 10.1007/978-1-62703-646-7_5.
    • (2014) Methods Mol Biol. , vol.1079 , pp. 75-101
    • Pearson, W.R.1
  • 78
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002;30(14):3059-66.
    • (2002) Nucleic Acids Res , vol.30 , Issue.14 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 79
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT multiple sequence alignment software version 7: improvements in performance and usability
    • Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30(4):772-80. doi: 10.1093/molbev/mst010.
    • (2013) Mol Biol Evol , vol.30 , Issue.4 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 80
    • 77954198131 scopus 로고    scopus 로고
    • A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches
    • Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, et al. A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches. Bioinformatics. 2010;26(12):1481-7. doi: 10.1093/bioinformatics/btq229.
    • (2010) Bioinformatics , vol.26 , Issue.12 , pp. 1481-1487
    • Kristensen, D.M.1    Kannan, L.2    Coleman, M.K.3    Wolf, Y.I.4    Sorokin, A.5    Koonin, E.V.6
  • 81
    • 84888227953 scopus 로고    scopus 로고
    • GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis
    • Contreras-Moreira B, Vinuesa P. GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis. Appl Environ Microbiol. 2013;79(24):7696-701. doi: 10.1128/AEM.02411-13.
    • (2013) Appl Environ Microbiol , vol.79 , Issue.24 , pp. 7696-7701
    • Contreras-Moreira, B.1    Vinuesa, P.2
  • 82
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov RL, Koonin EV, Lipman DJ. A genomic perspective on protein families. Science. 1997;278(5338):631-7.
    • (1997) Science , vol.278 , Issue.5338 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 84
    • 33747858422 scopus 로고    scopus 로고
    • GC-Profile: a web-based tool for visualizing and analyzing the variation of GC content in genomic sequences
    • Gao F, Zhang CT. GC-Profile: a web-based tool for visualizing and analyzing the variation of GC content in genomic sequences. Nucleic Acids Res. 2006;34(Web Server issue):W686-91. doi: 10.1093/nar/gkl040.
    • (2006) Nucleic Acids Res , vol.34 , Issue.Web Server issue , pp. W686-W691
    • Gao, F.1    Zhang, C.T.2
  • 85
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32(5):1792-7. doi: 10.1093/nar/gkh340.
    • (2004) Nucleic Acids Res , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 86
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: multiple alignment of conserved genomic sequence with rearrangements
    • Darling AC, Mau B, Blattner FR, Perna NT. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. 2004;14(7):1394-403. doi: 10.1101/gr.2289704.
    • (2004) Genome Res , vol.14 , Issue.7 , pp. 1394-1403
    • Darling, A.C.1    Mau, B.2    Blattner, F.R.3    Perna, N.T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.