-
1
-
-
0030466444
-
Just Add Water! the Effect of Water on the Specificity of Protein-Ligand Binding Sites and Its Potential Application to Drug Design
-
Ladbury, J. E. Just Add Water! The Effect of Water on the Specificity of Protein-Ligand Binding Sites and Its Potential Application to Drug Design Chem. Biol. 1996, 3, 973-980 10.1016/S1074-5521(96)90164-7
-
(1996)
Chem. Biol.
, vol.3
, pp. 973-980
-
-
Ladbury, J.E.1
-
2
-
-
0032479179
-
Anatomy of Hot Spots in Protein Interfaces
-
Bogan, A. A.; Thorn, K. S. Anatomy of Hot Spots in Protein Interfaces J. Mol. Biol. 1998, 280, 1-9 10.1006/jmbi.1998.1843
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 1-9
-
-
Bogan, A.A.1
Thorn, K.S.2
-
3
-
-
1542618345
-
Water in Protein Structure Prediction
-
Papoian, G. A.; Ulander, J.; Eastwood, M. P.; Luthey-Schulten, Z.; Wolynes, P. G. Water in Protein Structure Prediction Proc. Natl. Acad. Sci. U. S. A. 2004, 101, 3352-3357 10.1073/pnas.0307851100
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 3352-3357
-
-
Papoian, G.A.1
Ulander, J.2
Eastwood, M.P.3
Luthey-Schulten, Z.4
Wolynes, P.G.5
-
4
-
-
1542618416
-
Water and Proteins: A Love-Hate Relationship
-
Levy, Y.; Onuchic, J. N. Water and Proteins: A Love-Hate Relationship Proc. Natl. Acad. Sci. U. S. A. 2004, 101, 3325-3326 10.1073/pnas.0400157101
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 3325-3326
-
-
Levy, Y.1
Onuchic, J.N.2
-
5
-
-
33745032291
-
Water Mediation in Protein Folding and Molecular Recognition
-
Levy, Y.; Onuchic, J. N. Water Mediation in Protein Folding and Molecular Recognition Annu. Rev. Biophys. Biomol. Struct. 2006, 35, 389-415 10.1146/annurev.biophys.35.040405.102134
-
(2006)
Annu. Rev. Biophys. Biomol. Struct.
, vol.35
, pp. 389-415
-
-
Levy, Y.1
Onuchic, J.N.2
-
6
-
-
0037198650
-
Hydrophobicity: Two Faces of Water
-
Chandler, D. Hydrophobicity: Two Faces of Water Nature 2002, 417, 491 10.1038/417491a
-
(2002)
Nature
, vol.417
, pp. 491
-
-
Chandler, D.1
-
7
-
-
84912057709
-
Preface: Special Topic on Biological Water
-
Hummer, G.; Tokmakoff, A. Preface: Special Topic on Biological Water J. Chem. Phys. 2014, 141, 22D101 10.1063/1.4901337
-
(2014)
J. Chem. Phys.
, vol.141
, pp. 22D101
-
-
Hummer, G.1
Tokmakoff, A.2
-
8
-
-
4344602172
-
Protein Hydration Dynamics in Solution: A Critical Survey
-
Halle, B. Protein Hydration Dynamics in Solution: A Critical Survey Philos. Trans. R. Soc., B 2004, 359, 1207-1223 10.1098/rstb.2004.1499
-
(2004)
Philos. Trans. R. Soc., B
, vol.359
, pp. 1207-1223
-
-
Halle, B.1
-
9
-
-
19544372768
-
Hydration of Protein-Protein Interfaces
-
Rodier, F.; Bahadur, R. P.; Chakrabarti, P.; Janin, J. Hydration of Protein-Protein Interfaces Proteins: Struct., Funct., Genet. 2005, 60, 36-45 10.1002/prot.20478
-
(2005)
Proteins: Struct., Funct., Genet.
, vol.60
, pp. 36-45
-
-
Rodier, F.1
Bahadur, R.P.2
Chakrabarti, P.3
Janin, J.4
-
10
-
-
80051591247
-
Mapping the Hydration Dynamics of Ubiquitin
-
Nucci, N. V.; Pometun, M. S.; Wand, A. J. Mapping the Hydration Dynamics of Ubiquitin J. Am. Chem. Soc. 2011, 133, 12326-12329 10.1021/ja202033k
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 12326-12329
-
-
Nucci, N.V.1
Pometun, M.S.2
Wand, A.J.3
-
11
-
-
84918532011
-
Comparative Study of Hydration Shell Dynamics Around a Hyperactive Antifreeze Protein and Around Ubiquitin
-
Duboue-Dijon, E.; Laage, D. Comparative Study of Hydration Shell Dynamics Around a Hyperactive Antifreeze Protein and Around Ubiquitin J. Chem. Phys. 2014, 141, 22D529 10.1063/1.4902822
-
(2014)
J. Chem. Phys.
, vol.141
, pp. 22D529
-
-
Duboue-Dijon, E.1
Laage, D.2
-
12
-
-
2342527858
-
Dynamics of Water in Biological Recognition
-
Pal, A. K.; Zewail, A. H. Dynamics of Water in Biological Recognition Chem. Rev. 2004, 104, 2099-2123 10.1021/cr020689l
-
(2004)
Chem. Rev.
, vol.104
, pp. 2099-2123
-
-
Pal, A.K.1
Zewail, A.H.2
-
13
-
-
84873438027
-
Cryogenic Ion Mobility-Mass Spectrometry Captures Hydrated Ions Produced during Electrospray Ionization
-
Silveira, J. A.; Servage, K. A.; Gamage, C. M.; Russell, D. H. Cryogenic Ion Mobility-Mass Spectrometry Captures Hydrated Ions Produced During Electrospray Ionization J. Phys. Chem. A 2013, 117, 953-961 10.1021/jp311278a
-
(2013)
J. Phys. Chem. A
, vol.117
, pp. 953-961
-
-
Silveira, J.A.1
Servage, K.A.2
Gamage, C.M.3
Russell, D.H.4
-
14
-
-
84891292293
-
From Solution to the Gas Phase: Stepwise Dehydration and Kinetic Trapping of Substance P Reveals the Origin of Peptide Conformations
-
Silveira, J. A.; Fort, K. L.; Kim, D.; Servage, K. A.; Pierson, N. A.; Clemmer, D. E.; Russell, D. H. From Solution to the Gas Phase: Stepwise Dehydration and Kinetic Trapping of Substance P Reveals the Origin of Peptide Conformations J. Am. Chem. Soc. 2013, 135, 19147-19153 10.1021/ja4114193
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 19147-19153
-
-
Silveira, J.A.1
Fort, K.L.2
Kim, D.3
Servage, K.A.4
Pierson, N.A.5
Clemmer, D.E.6
Russell, D.H.7
-
16
-
-
84926483367
-
From Solution to Gas Phase: The Implications of Intramolecular Interactions on the Evaporative Dynamics of Substance P during Electrospray Ionization
-
Servage, K. A.; Silveira, J. A.; Fort, K. L.; Russell, D. H. From Solution to Gas Phase: The Implications of Intramolecular Interactions on the Evaporative Dynamics of Substance P During Electrospray Ionization J. Phys. Chem. B 2015, 119, 4693-4698 10.1021/jp512708u
-
(2015)
J. Phys. Chem. B
, vol.119
, pp. 4693-4698
-
-
Servage, K.A.1
Silveira, J.A.2
Fort, K.L.3
Russell, D.H.4
-
17
-
-
84937721895
-
Unfolding of Hydrated Alkyl Diammonium Cations Revealed by Cryogenic Ion Mobility-Mass Spectrometry
-
Servage, K. A.; Fort, K. L.; Silveira, J. A.; Shi, L.; Clemmer, D. E.; Russell, D. H. Unfolding of Hydrated Alkyl Diammonium Cations Revealed by Cryogenic Ion Mobility-Mass Spectrometry J. Am. Chem. Soc. 2015, 137, 8916-8919 10.1021/jacs.5b05448
-
(2015)
J. Am. Chem. Soc.
, vol.137
, pp. 8916-8919
-
-
Servage, K.A.1
Fort, K.L.2
Silveira, J.A.3
Shi, L.4
Clemmer, D.E.5
Russell, D.H.6
-
18
-
-
84917710649
-
From Solution to the Gas Phase: Factors That Influence Kinetic Trapping of Substance P in the Gas Phase
-
Fort, K. F.; Silveira, J. A.; Pierson, N. A.; Servage, K. A.; Clemmer, D. E.; Russell, D. H. From Solution to the Gas Phase: Factors That Influence Kinetic Trapping of Substance P in the Gas Phase J. Phys. Chem. B 2014, 118, 14336-14344 10.1021/jp5103687
-
(2014)
J. Phys. Chem. B
, vol.118
, pp. 14336-14344
-
-
Fort, K.F.1
Silveira, J.A.2
Pierson, N.A.3
Servage, K.A.4
Clemmer, D.E.5
Russell, D.H.6
-
19
-
-
0038375551
-
Sequential Hydration of Small Protonated Peptides
-
Liu, D.; Wyttenbach, T.; Barran, P. E.; Bowers, M. T. Sequential Hydration of Small Protonated Peptides J. Am. Chem. Soc. 2003, 125, 8458-8464 10.1021/ja034638x
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 8458-8464
-
-
Liu, D.1
Wyttenbach, T.2
Barran, P.E.3
Bowers, M.T.4
-
21
-
-
77953108542
-
The Diversity of Ubiquitin Recognition: Hot Spots and Varied Specificity
-
Winget, J. M.; Mayor, T. The Diversity of Ubiquitin Recognition: Hot Spots and Varied Specificity Mol. Cell 2010, 38, 627-635 10.1016/j.molcel.2010.05.003
-
(2010)
Mol. Cell
, vol.38
, pp. 627-635
-
-
Winget, J.M.1
Mayor, T.2
-
22
-
-
0017698893
-
Nuclear Magnetic Resonance Studies of Denaturation of Ubiquitin
-
Lenkinski, R. E.; Chen, D. M.; Glickson, J. D.; Goldstein, G. Nuclear Magnetic Resonance Studies of Denaturation of Ubiquitin Biochim. Biophys. Acta, Protein Struct. 1977, 494, 126-130 10.1016/0005-2795(77)90140-4
-
(1977)
Biochim. Biophys. Acta, Protein Struct.
, vol.494
, pp. 126-130
-
-
Lenkinski, R.E.1
Chen, D.M.2
Glickson, J.D.3
Goldstein, G.4
-
23
-
-
0023644679
-
Structure of Ubiquitin Refined at 1.8Å Resolution
-
Vijaykumar, S.; Bugg, C. E.; Cook, W. J. Structure of Ubiquitin Refined at 1.8Å Resolution J. Mol. Biol. 1987, 194, 531-544 10.1016/0022-2836(87)90679-6
-
(1987)
J. Mol. Biol.
, vol.194
, pp. 531-544
-
-
Vijaykumar, S.1
Bugg, C.E.2
Cook, W.J.3
-
25
-
-
0022996148
-
Alcohol Induced Conformational Changes of Ubiquitin
-
Wilkinson, K. D.; Mayer, A. N. Alcohol Induced Conformational Changes of Ubiquitin Arch. Biochem. Biophys. 1986, 250, 390-399 10.1016/0003-9861(86)90741-1
-
(1986)
Arch. Biochem. Biophys.
, vol.250
, pp. 390-399
-
-
Wilkinson, K.D.1
Mayer, A.N.2
-
26
-
-
0025731274
-
Characterization of a Partially Denatured State of a Protein by Two-Dimensional NMR: Reduction of the Hydrophobic Interactions in Ubiquitin
-
Harding, M. M.; Williams, D. H.; Woolfson, D. N. Characterization of a Partially Denatured State of a Protein by Two-Dimensional NMR: Reduction of the Hydrophobic Interactions in Ubiquitin Biochemistry 1991, 30, 3120-3128 10.1021/bi00226a020
-
(1991)
Biochemistry
, vol.30
, pp. 3120-3128
-
-
Harding, M.M.1
Williams, D.H.2
Woolfson, D.N.3
-
27
-
-
80054892557
-
Structural Stability from Solution to the Gas Phase: Native Solution Structure of Ubiquitin Survives Analysis in a Solvent-Free Ion Mobility-Mass Spectrometry Environment
-
Wyttenbach, T.; Bowers, M. T. Structural Stability from Solution to the Gas Phase: Native Solution Structure of Ubiquitin Survives Analysis in a Solvent-Free Ion Mobility-Mass Spectrometry Environment J. Phys. Chem. B 2011, 115, 12266-12275 10.1021/jp206867a
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 12266-12275
-
-
Wyttenbach, T.1
Bowers, M.T.2
-
28
-
-
84864876729
-
How Ubiquitin Unfolds after Transfer to the Gas Phase
-
Skinner, O. S.; McLafferty, F. M.; Breuker, K. How Ubiquitin Unfolds after Transfer to the Gas Phase J. Am. Soc. Mass Spectrom. 2012, 23, 1011-1014 10.1007/s13361-012-0370-6
-
(2012)
J. Am. Soc. Mass Spectrom.
, vol.23
, pp. 1011-1014
-
-
Skinner, O.S.1
McLafferty, F.M.2
Breuker, K.3
-
29
-
-
84938799597
-
How Closely Related Are Conformations of Protein Ions Sampled by IM-MS to Native Solution Structures
-
Chen, S.-H.; Russell, D. How Closely Related Are Conformations of Protein Ions Sampled by IM-MS to Native Solution Structures J. Am. Soc. Mass Spectrom. 2015, 26, 1433-1443 10.1007/s13361-015-1191-1
-
(2015)
J. Am. Soc. Mass Spectrom.
, vol.26
, pp. 1433-1443
-
-
Chen, S.-H.1
Russell, D.2
-
30
-
-
84898072896
-
Evidence for Two New Solution States of Ubiquitin by IMS-MS Analysis
-
Shi, H.; Clemmer, D. E. Evidence for Two New Solution States of Ubiquitin by IMS-MS Analysis J. Phys. Chem. B 2014, 118, 3498-3506 10.1021/jp4097327
-
(2014)
J. Phys. Chem. B
, vol.118
, pp. 3498-3506
-
-
Shi, H.1
Clemmer, D.E.2
-
31
-
-
84858327195
-
8+ Ions from Water:Methanol Solutions: Evidence for the N and A States in Aqueous Solution
-
8+ Ions from Water:Methanol Solutions: Evidence for the N and A States in Aqueous Solution J. Phys. Chem. B 2012, 116, 3344-3352 10.1021/jp210797x
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 3344-3352
-
-
Shi, H.1
Pierson, N.A.2
Valentine, S.J.3
Clemmer, D.E.4
-
32
-
-
84871724447
-
Unraveling the Mechanism of Electrospray Ionization
-
Konermann, L.; Ahadi, E.; Rodriguez, A. D.; Vahidi, S. Unraveling the Mechanism of Electrospray Ionization Anal. Chem. 2013, 85, 2-9 10.1021/ac302789c
-
(2013)
Anal. Chem.
, vol.85
, pp. 2-9
-
-
Konermann, L.1
Ahadi, E.2
Rodriguez, A.D.3
Vahidi, S.4
-
33
-
-
84855443948
-
Noncovalent Dimerization of Ubiquitin
-
Liu, Z.; Zhang, W.-P.; Xing, Q.; Ren, X.; Liu, M.; Tang, C. Noncovalent Dimerization of Ubiquitin Angew. Chem., Int. Ed. 2012, 51, 469-472 10.1002/anie.201106190
-
(2012)
Angew. Chem., Int. Ed.
, vol.51
, pp. 469-472
-
-
Liu, Z.1
Zhang, W.-P.2
Xing, Q.3
Ren, X.4
Liu, M.5
Tang, C.6
-
34
-
-
0032568540
-
Free Energy of Burying Hydrophobic Residues in the Interface between Protein Subunits
-
Vallone, B.; Miele, A. E.; Vecchini, P.; Chiancone, E.; Brunori, M. Free Energy of Burying Hydrophobic Residues in the Interface Between Protein Subunits Proc. Natl. Acad. Sci. U. S. A. 1998, 95, 6103-6107 10.1073/pnas.95.11.6103
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 6103-6107
-
-
Vallone, B.1
Miele, A.E.2
Vecchini, P.3
Chiancone, E.4
Brunori, M.5
-
36
-
-
84863833759
-
Water-Induced Folding of 1,7-Diammoniumheptane
-
Demireva, M.; O'Brien, J. T.; Williams, E. R. Water-Induced Folding of 1,7-Diammoniumheptane J. Am. Chem. Soc. 2012, 134, 11216-11224 10.1021/ja303313p
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 11216-11224
-
-
Demireva, M.1
O'Brien, J.T.2
Williams, E.R.3
|