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Volumn 17, Issue 1, 2016, Pages

Detection of interactions between proteins through rotation forest and local phase quantization descriptors

Author keywords

Local phase quantization; Physicochemical property response matrix (PR); Protein protein interaction; Rotation forest

Indexed keywords

ANALYTICAL PARAMETERS; AREA UNDER THE CURVE; ARTICLE; CLASSIFIER; COMPUTER MODEL; CONTROLLED STUDY; CORRELATION COEFFICIENT; DIAGNOSTIC TEST ACCURACY STUDY; FALSE NEGATIVE RESULT; FALSE POSITIVE RESULT; HUMAN; LOCAL PHASE QUANTIZATION; MEASUREMENT ACCURACY; MEASUREMENT PRECISION; NONHUMAN; PROTEIN PROTEIN INTERACTION; RECEIVER OPERATING CHARACTERISTIC; ROTATION FOREST; SENSITIVITY; SUPPORT VECTOR MACHINE; VALIDATION PROCESS; GENETICS; HELICOBACTER PYLORI; METABOLISM; PROCEDURES; PROTEOMICS; SACCHAROMYCES CEREVISIAE; SOFTWARE;

EID: 84951847540     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms17010021     Document Type: Article
Times cited : (46)

References (26)
  • 4
    • 0037059461 scopus 로고    scopus 로고
    • A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules
    • [CrossRef] [PubMed]
    • Tong, A.H.; Drees, B.; Nardelli, G.; Bader, G.D.; Brannetti, B.; Castagnoli, L.; Evangelista, M.; Ferracuti, S.; Nelson, B.; Paoluzi, S.; et al. A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Science 2002, 295, 321-324. [CrossRef] [PubMed]
    • (2002) Science , vol.295 , pp. 321-324
    • Tong, A.H.1    Drees, B.2    Nardelli, G.3    Bader, G.D.4    Brannetti, B.5    Castagnoli, L.6    Evangelista, M.7    Ferracuti, S.8    Nelson, B.9    Paoluzi, S.10
  • 5
    • 0024406857 scopus 로고
    • A novel genetic system to detect protein protein interactions
    • [CrossRef] [PubMed]
    • Fields, S.; Song, O. A novel genetic system to detect protein protein interactions. Nature 1989, 340, 245-246. [CrossRef] [PubMed]
    • (1989) Nature , vol.340 , pp. 245-246
    • Fields, S.1    Song, O.2
  • 7
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive twohybrid analysis to explore the yeast protein interactome
    • [CrossRef] [PubMed]
    • Ito, T.; Chiba, T.; Ozawa, R.; Yoshida, M.; Hattori, M.; Sakaki, Y. A comprehensive twohybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci. USA 2001, 98, 4569-4574. [CrossRef] [PubMed]
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 4569-4574
    • Ito, T.1    Chiba, T.2    Ozawa, R.3    Yoshida, M.4    Hattori, M.5    Sakaki, Y.6
  • 9
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
    • [CrossRef] [PubMed]
    • Ho, Y.; Gruhler, A.; Heilbut, A.; Bader, G.D.; Moore, L.; Adams, S.L.; Millar, A.; Taylor, P.; Bennett, K.; Boutilier, K.; et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 2002, 415, 180-183. [CrossRef] [PubMed]
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1    Gruhler, A.2    Heilbut, A.3    Bader, G.D.4    Moore, L.5    Adams, S.L.6    Millar, A.7    Taylor, P.8    Bennett, K.9    Boutilier, K.10
  • 10
    • 0035733690 scopus 로고    scopus 로고
    • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
    • [CrossRef] [PubMed]
    • Ge, H.; Liu, Z.; Church, G.M.; Vidal, M. Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. Nat. Genet. 2001, 29, 482-486. [CrossRef] [PubMed]
    • (2001) Nat. Genet. , vol.29 , pp. 482-486
    • Ge, H.1    Liu, Z.2    Church, G.M.3    Vidal, M.4
  • 11
    • 77955106017 scopus 로고    scopus 로고
    • A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network
    • [CrossRef] [PubMed]
    • You, Z.H.; Yin, Z.; Han, K.; Huang, D.S.; Zhou, X. A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network. BMC Bioinform. 2010, 1. [CrossRef] [PubMed]
    • (2010) BMC Bioinform. , pp. 1
    • You, Z.H.1    Yin, Z.2    Han, K.3    Huang, D.S.4    Zhou, X.5
  • 12
    • 44349159560 scopus 로고    scopus 로고
    • Using support vector machine combined with auto covariance to predict proteinprotein interactions from protein sequences
    • [CrossRef] [PubMed]
    • Guo, Y.; Yu, L.; Wen, Z.; Li, M. Using support vector machine combined with auto covariance to predict proteinprotein interactions from protein sequences. Nucleic Acids Res. 2008, 36, 3025-3030. [CrossRef] [PubMed]
    • (2008) Nucleic Acids Res. , vol.36 , pp. 3025-3030
    • Guo, Y.1    Yu, L.2    Wen, Z.3    Li, M.4
  • 13
    • 77958498250 scopus 로고    scopus 로고
    • Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data
    • [CrossRef] [PubMed]
    • You, Z.H.; Lei, Y.K.; Gui, J.; Huang, D.S.; Zhou, X. Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data. Bioinformatics 2010, 26, 2744-2751. [CrossRef] [PubMed]
    • (2010) Bioinformatics , vol.26 , pp. 2744-2751
    • You, Z.H.1    Lei, Y.K.2    Gui, J.3    Huang, D.S.4    Zhou, X.5
  • 14
    • 77958490588 scopus 로고    scopus 로고
    • Increasing Reliability of Protein Interactome by Combining Heterogeneous Data Sources with Weighted Network Topological Metrics
    • Huang, D.S., Zhao, Z.M., Bevilacqua, V., Figueroa, J.C., Eds.; Springer: Changsha, China
    • You, Z.H.; Li, L.; Yu, H.; Chen, S.; Wang, S.L. Increasing Reliability of Protein Interactome by Combining Heterogeneous Data Sources with Weighted Network Topological Metrics. In Advanced Intelligent Computing Theories and Applications; Huang, D.S., Zhao, Z.M., Bevilacqua, V., Figueroa, J.C., Eds.; Springer: Changsha, China, 2010; Volume 6215, pp. 657-663.
    • (2010) Advanced Intelligent Computing Theories and Applications , vol.6215 , pp. 657-663
    • You, Z.H.1    Li, L.2    Yu, H.3    Chen, S.4    Wang, S.L.5
  • 16
    • 84872807629 scopus 로고    scopus 로고
    • Assessing and predicting protein interactions by combining manifold embedding with multiple information integration
    • [CrossRef] [PubMed]
    • Lei, Y.K.; You, Z.H.; Ji, Z.; Zhu, L.; Huang, D.S. Assessing and predicting protein interactions by combining manifold embedding with multiple information integration. BMC Bioinform. 2012, 13, (Suppl. S7). [CrossRef] [PubMed]
    • (2012) BMC Bioinform. , vol.13
    • Lei, Y.K.1    You, Z.H.2    Ji, Z.3    Zhu, L.4    Huang, D.S.5
  • 17
    • 38949138554 scopus 로고    scopus 로고
    • Computational prediction of protein-protein interactions
    • [CrossRef] [PubMed]
    • Skrabanek, L.; Saini, H.; Bader, G.; Enright, A. Computational prediction of protein-protein interactions. Mol. Biotechnol. 2008, 38, 1-17. [CrossRef] [PubMed]
    • (2008) Mol. Biotechnol. , vol.38 , pp. 1-17
    • Skrabanek, L.1    Saini, H.2    Bader, G.3    Enright, A.4
  • 18
    • 15944418607 scopus 로고    scopus 로고
    • Random forest similarity for protein-protein interaction prediction from multiple sources
    • Qi, Y.J.; Seetharaman, J.K.; Joseph, Z.B. Random forest similarity for protein-protein interaction prediction from multiple sources. Pac. Symp. Biocomput. 2005, 10, 531-542.
    • (2005) Pac. Symp. Biocomput. , vol.10 , pp. 531-542
    • Qi, Y.J.1    Seetharaman, J.K.2    Joseph, Z.B.3
  • 19
    • 78449307593 scopus 로고    scopus 로고
    • Prediction of protein-protein interactions from protein sequence using local descriptors
    • [CrossRef]
    • Yang, L.; Xia, J.F.; Gui, J. Prediction of protein-protein interactions from protein sequence using local descriptors. Protein Pept. Lett. 2010, 9, 1085-1090. [CrossRef]
    • (2010) Protein Pept. Lett. , vol.9 , pp. 1085-1090
    • Yang, L.1    Xia, J.F.2    Gui, J.3
  • 20
    • 34248371273 scopus 로고    scopus 로고
    • Predictina protein-protein interactions based only on sequences information
    • [CrossRef] [PubMed]
    • Shen, J.; Zhang, J.; Luo, X.; Zhu,W.; Yu, K.; Chen, K.; Li, Y.; Jiang, H. Predictina protein-protein interactions based only on sequences information. Proc. Natl. Acad. Sci. USA 2007, 104, 4337-4341. [CrossRef] [PubMed]
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 4337-4341
    • Shen, J.1    Zhang, J.2    Luo, X.3    Zhu, W.4    Yu, K.5    Chen, K.6    Li, Y.7    Jiang, H.8
  • 21
    • 84864770395 scopus 로고    scopus 로고
    • Wavelet images and Chou's pseudo amino acid composition for protein classification
    • [CrossRef] [PubMed]
    • Nanni, L.; Brahnam, S.; Lumini, A.Wavelet images and Chou's pseudo amino acid composition for protein classification. Amino Acids 2012, 43, 657-665. [CrossRef] [PubMed]
    • (2012) Amino Acids , vol.43 , pp. 657-665
    • Nanni, L.1    Brahnam, S.2    Lumini, A.3
  • 22
    • 79960395689 scopus 로고    scopus 로고
    • Prediction of protein-protein interactions using local description of amino acid sequence
    • Springer Berlin Heidelberg: Qingdao, China
    • Zhou, Y.Z.; Gao, Y.; Zheng, Y.Y. Prediction of protein-protein interactions using local description of amino acid sequence. In Advances in Computer Science and Education Applications; Springer Berlin Heidelberg: Qingdao, China, 2011; pp. 254-262.
    • (2011) Advances in Computer Science and Education Applications , pp. 254-262
    • Zhou, Y.Z.1    Gao, Y.2    Zheng, Y.Y.3
  • 23
    • 0037249217 scopus 로고    scopus 로고
    • Whole-proteome interaction mining
    • [CrossRef] [PubMed]
    • Bock, J.R.; Gough, D.A. Whole-proteome interaction mining. Bioinformatics 2003, 19, 125-134. [CrossRef] [PubMed]
    • (2003) Bioinformatics , vol.19 , pp. 125-134
    • Bock, J.R.1    Gough, D.A.2
  • 24
    • 85018218795 scopus 로고    scopus 로고
    • Predicting protein-protein interactions using correlation coefficient and priciple component analysis
    • Thanathamathee, P.; Lursinsap, C. Predicting protein-protein interactions using correlation coefficient and priciple component analysis. IEEE 2009, 3, 1-4.
    • (2009) IEEE , vol.3 , pp. 1-4
    • Thanathamathee, P.1    Lursinsap, C.2
  • 25
    • 13444262436 scopus 로고    scopus 로고
    • Predicting protein-protein interactions using signature products
    • [CrossRef] [PubMed]
    • Martin, S.; Roe, D.; Faulon, J.L. Predicting protein-protein interactions using signature products. Bioinformatics 2005, 21, 218-226. [CrossRef] [PubMed]
    • (2005) Bioinformatics , vol.21 , pp. 218-226
    • Martin, S.1    Roe, D.2    Faulon, J.L.3
  • 26
    • 84867689037 scopus 로고    scopus 로고
    • Combining pattern classifiers: Methods and algorithms
    • Kuncheva, L.I. Combining pattern classifiers: Methods and algorithms. Technometrics 2004, 47, 517-518.
    • (2004) Technometrics , vol.47 , pp. 517-518
    • Kuncheva, L.I.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.