메뉴 건너뛰기




Volumn 9198, Issue , 2015, Pages 310-322

Speedy colorful subtrees

Author keywords

[No Author keywords available]

Indexed keywords

C++ (PROGRAMMING LANGUAGE); COMBINATORIAL MATHEMATICS; COMPUTER SOFTWARE; FORESTRY; INTEGER PROGRAMMING; TREES (MATHEMATICS);

EID: 84951207956     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-319-21398-9_25     Document Type: Conference Paper
Times cited : (7)

References (18)
  • 1
    • 34547463620 scopus 로고    scopus 로고
    • A fast and simple algorithm for the Money Changing Problem
    • Böcker, S., Lipták, Z.: A fast and simple algorithm for the Money Changing Problem. Algorithmica 48(4), 413–432 (2007)
    • (2007) Algorithmica , vol.48 , Issue.4 , pp. 413-432
    • Böcker, S.1    Lipták, Z.2
  • 2
    • 49549101405 scopus 로고    scopus 로고
    • Towards de novo identification of metabolites by analyzing tandem mass spectra
    • Proc. of European Conference on Computational Biology (ECCB 2008)
    • Böcker, S., Rasche, F.: Towards de novo identification of metabolites by analyzing tandem mass spectra. Bioinformatics 24, I49–I55 (2008). Proc. of European Conference on Computational Biology (ECCB 2008)
    • (2008) Bioinformatics , vol.24 , pp. I49-I55
    • Böcker, S.1    Rasche, F.2
  • 3
    • 58349086772 scopus 로고    scopus 로고
    • SIRIUS: Decomposing isotope patterns for metabolite identification
    • Böcker, S., Letzel, M., Lipták, Z., Pervukhin, A.: SIRIUS: Decomposing isotope patterns for metabolite identification. Bioinformatics 25(2), 218–224 (2009)
    • (2009) Bioinformatics , vol.25 , Issue.2 , pp. 218-224
    • Böcker, S.1    Letzel, M.2    Lipták, Z.3    Pervukhin, A.4
  • 4
    • 0000122499 scopus 로고    scopus 로고
    • On implementing push-relabel method for the maximum flow problem
    • Cherkassky, B., Goldberg, A.: On implementing push-relabel method for the maximum flow problem. Algorithmica 19, 390–410 (1997)
    • (1997) Algorithmica , vol.19 , pp. 390-410
    • Cherkassky, B.1    Goldberg, A.2
  • 5
    • 84926296214 scopus 로고    scopus 로고
    • Fragmentation trees reloaded
    • In: Przytycka, T.M. (ed.), Springer, Heidelberg
    • Dührkop, K., Böcker, S.: Fragmentation trees reloaded. In: Przytycka, T.M. (ed.) RECOMB 2015. LNCS, vol. 9029, pp. 65–79. Springer, Heidelberg (2015)
    • (2015) RECOMB 2015. LNCS , vol.9029 , pp. 65-79
    • Dührkop, K.1    Böcker, S.2
  • 6
    • 84930177686 scopus 로고    scopus 로고
    • Molecular formula identification using isotope pattern analysis and calculation of fragmentation trees
    • Dührkop, K., Hufsky, F., Böcker, S.: Molecular formula identification using isotope pattern analysis and calculation of fragmentation trees. Mass Spectrom 3(special issue 2), S0037 (2014)
    • (2014) Mass Spectrom , vol.3
    • Dührkop, K.1    Hufsky, F.2    Böcker, S.3
  • 7
    • 33646754900 scopus 로고    scopus 로고
    • Metabolomic database annotations via query of elemental compositions: Mass accuracy is insufficient even at less than 1 ppm
    • Kind, T., Fiehn, O.: Metabolomic database annotations via query of elemental compositions: Mass accuracy is insufficient even at less than 1 ppm. BMC Bioinformatics 7(1), 234 (2006)
    • (2006) BMC Bioinformatics , vol.7 , Issue.1 , pp. 234
    • Kind, T.1    Fiehn, O.2
  • 8
    • 84868558116 scopus 로고    scopus 로고
    • MolFind: A software package enabling HPLC/MS-based identification of unknown chemical structures
    • Menikarachchi, L.C., Cawley, S., Hill, D.W., Hall, L.M., Hall, L., Lai, S., Wilder, J., Grant, D.F.: MolFind: A software package enabling HPLC/MS-based identification of unknown chemical structures. Anal Chem 84(21), 9388–9394 (2012)
    • (2012) Anal Chem , vol.84 , Issue.21 , pp. 9388-9394
    • Menikarachchi, L.C.1    Cawley, S.2    Hill, D.W.3    Hall, L.M.4    Hall, L.5    Lai, S.6    Wilder, J.7    Grant, D.F.8
  • 9
    • 79959622504 scopus 로고    scopus 로고
    • MS/MS data improves automated determination of molecular formulas by mass spectrometry
    • Meringer, M., Reinker, S., Zhang, J., Muller, A.: MS/MS data improves automated determination of molecular formulas by mass spectrometry. MATCH-Commun Math Co 65, 259–290 (2011)
    • (2011) Match-Commun Math Co , vol.65 , pp. 259-290
    • Meringer, M.1    Reinker, S.2    Zhang, J.3    Muller, A.4
  • 11
    • 84861147702 scopus 로고    scopus 로고
    • Highly accurate chemical formula prediction tool utilizing high-resolution mass spectra, MS/MS fragmentation, heuristic rules, and isotope pattern matching
    • Pluskal, T., Uehara, T., Yanagida, M.: Highly accurate chemical formula prediction tool utilizing high-resolution mass spectra, MS/MS fragmentation, heuristic rules, and isotope pattern matching. Anal Chem 84(10), 4396–4403 (2012)
    • (2012) Anal Chem , vol.84 , Issue.10 , pp. 4396-4403
    • Pluskal, T.1    Uehara, T.2    Yanagida, M.3
  • 12
    • 79951640091 scopus 로고    scopus 로고
    • Computing fragmentation trees from tandem mass spectrometry data
    • Rasche, F., Svatoš, A., Maddula, R.K., Böttcher, C., Böcker, S.: Computing fragmentation trees from tandem mass spectrometry data. Anal Chem 83(4), 1243–1251 (2011)
    • (2011) Anal Chem , vol.83 , Issue.4 , pp. 1243-1251
    • Rasche, F.1    Svatoš, A.2    Maddula, R.K.3    Böttcher, C.4    Böcker, S.5
  • 14
    • 84876246881 scopus 로고    scopus 로고
    • Finding maximum colorful subtrees in practice
    • Rauf, I., Rasche, F., Nicolas, F., Böcker, S.: Finding maximum colorful subtrees in practice. J Comput Biol 20(4), 1–11 (2013)
    • (2013) J Comput Biol , vol.20 , Issue.4 , pp. 1-11
    • Rauf, I.1    Rasche, F.2    Nicolas, F.3    Böcker, S.4
  • 16
    • 84900839280 scopus 로고    scopus 로고
    • Metabolite identification through multiple kernel learning on fragmentation trees
    • Proc. of Intelligent Systems for Molecular Biology (ISMB 2014)
    • Shen, H., Dührkop, K., Böcker, S., Rousu, J.: Metabolite identification through multiple kernel learning on fragmentation trees. Bioinformatics 30(12), 157–164 (2014). Proc. of Intelligent Systems for Molecular Biology (ISMB 2014)
    • (2014) Bioinformatics , vol.30 , Issue.12 , pp. 157-164
    • Shen, H.1    Dührkop, K.2    Böcker, S.3    Rousu, J.4
  • 17
    • 84866123900 scopus 로고    scopus 로고
    • An accelerated workflow for untargeted metabolomics using the METLIN database
    • Tautenhahn, R., Cho, K., Uritboonthai, W., Zhu, Z., Patti, G.J., Siuzdak, G.: An accelerated workflow for untargeted metabolomics using the METLIN database. Nat Biotechnol 30(9), 826–828 (2012)
    • (2012) Nat Biotechnol , vol.30 , Issue.9 , pp. 826-828
    • Tautenhahn, R.1    Cho, K.2    Uritboonthai, W.3    Zhu, Z.4    Patti, G.J.5    Siuzdak, G.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.