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Volumn 84, Issue 10, 2012, Pages 4396-4403

Highly accurate chemical formula prediction tool utilizing high-resolution mass spectra, MS/MS fragmentation, heuristic rules, and isotope pattern matching

Author keywords

[No Author keywords available]

Indexed keywords

ACCURATE MEASUREMENT; CHEMICAL FORMULAE; DATA SETS; HEURISTIC RULES; HEURISTIC TECHNIQUES; HIGH RESOLUTION MASS SPECTROMETRY; HIGH-RESOLUTION MASS SPECTRUM; ISOTOPE PATTERN; MASS ACCURACY; MASS-TO-CHARGE RATIO; METABOLOMICS; MS/MS FRAGMENTATION; ORBITRAP; ORBITRAP MS; PREDICTION TOOLS; SMALL MOLECULES; SOURCE CODE REPOSITORIES; SOURCE CODES;

EID: 84861147702     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac3000418     Document Type: Article
Times cited : (108)

References (23)
  • 2
    • 33646754900 scopus 로고    scopus 로고
    • Metabolomic database annotations via query of elemental compositions: Mass accuracy is insufficient even at less than 1 ppm
    • Kind, T.; Fiehn, O. Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppm BMC Bioinf. 2006, 7, 234
    • (2006) BMC Bioinf. , vol.7 , pp. 234
    • Kind, T.1    Fiehn, O.2
  • 3
    • 78650737804 scopus 로고    scopus 로고
    • Advances in structure elucidation of small molecules using mass spectrometry
    • Kind, T.; Fiehn, O. Advances in structure elucidation of small molecules using mass spectrometry Bioanal. Rev. 2010, 2, 23-60
    • (2010) Bioanal. Rev. , vol.2 , pp. 23-60
    • Kind, T.1    Fiehn, O.2
  • 4
    • 34247163207 scopus 로고    scopus 로고
    • Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry
    • Kind, T.; Fiehn, O. Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry BMC Bioinf. 2007, 8, 105
    • (2007) BMC Bioinf. , vol.8 , pp. 105
    • Kind, T.1    Fiehn, O.2
  • 6
    • 49549101405 scopus 로고    scopus 로고
    • Towards de novo identification of metabolites by analyzing tandem mass spectra
    • Böcker, S.; Rasche, F. Towards de novo identification of metabolites by analyzing tandem mass spectra Bioinformatics 2008, 24, i49-i55
    • (2008) Bioinformatics , vol.24
    • Böcker, S.1    Rasche, F.2
  • 7
  • 9
    • 77954772536 scopus 로고    scopus 로고
    • MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
    • Pluskal, T.; Castillo, S.; Villar-Briones, A.; Oresic, M. MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data BMC Bioinf. 2010, 11, 395
    • (2010) BMC Bioinf. , vol.11 , pp. 395
    • Pluskal, T.1    Castillo, S.2    Villar-Briones, A.3    Oresic, M.4
  • 10
    • 72949116339 scopus 로고    scopus 로고
    • Metabolic profiling of the fission yeast S. pombe: Quantification of compounds under different temperatures and genetic perturbation
    • Pluskal, T.; Nakamura, T.; Villar-Briones, A.; Yanagida, M. Metabolic profiling of the fission yeast S. pombe: quantification of compounds under different temperatures and genetic perturbation Mol. Biosyst. 2010, 6, 182-98
    • (2010) Mol. Biosyst. , vol.6 , pp. 182-198
    • Pluskal, T.1    Nakamura, T.2    Villar-Briones, A.3    Yanagida, M.4
  • 12
    • 77956849541 scopus 로고
    • Physiological and cytological methods for Schizosaccharomyces pombe
    • Mitchison, J. M. Physiological and cytological methods for Schizosaccharomyces pombe Methods Cell Physiol. 1970, 131-165
    • (1970) Methods Cell Physiol. , pp. 131-165
    • Mitchison, J.M.1
  • 15
    • 33646716759 scopus 로고    scopus 로고
    • Analogous odd-even parities in mathematics and chemistry
    • Morikawa, T.; Newbold, B. T. Analogous odd-even parities in mathematics and chemistry Khimiya (Sofiya, Bulg.) 2003, 12, 445-450
    • (2003) Khimiya (Sofiya, Bulg.) , vol.12 , pp. 445-450
    • Morikawa, T.1    Newbold, B.T.2
  • 16
    • 33750990835 scopus 로고    scopus 로고
    • Isotope pattern evaluation for the reduction of elemental compositions assigned to high-resolution mass spectral data from electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry
    • Stoll, N.; Schmidt, E.; Thurow, K. Isotope pattern evaluation for the reduction of elemental compositions assigned to high-resolution mass spectral data from electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry J. Am. Soc. Mass Spectrom. 2006, 17, 1692-9
    • (2006) J. Am. Soc. Mass Spectrom. , vol.17 , pp. 1692-1699
    • Stoll, N.1    Schmidt, E.2    Thurow, K.3
  • 17
    • 0036558157 scopus 로고    scopus 로고
    • Scaling MS plateaus with high-resolution FT-ICRMS
    • Marshall, A. G.; Hendrickson, C. L.; Shi, S. D. Scaling MS plateaus with high-resolution FT-ICRMS Anal. Chem. 2002, 74, 252A-259A
    • (2002) Anal. Chem. , vol.74
    • Marshall, A.G.1    Hendrickson, C.L.2    Shi, S.D.3
  • 18
    • 77956254902 scopus 로고    scopus 로고
    • The concept of spectral accuracy for MS
    • Wang, Y.; Gu, M. The concept of spectral accuracy for MS Anal. Chem. 2010, 82, 7055-62
    • (2010) Anal. Chem. , vol.82 , pp. 7055-7062
    • Wang, Y.1    Gu, M.2
  • 21
    • 70349775820 scopus 로고    scopus 로고
    • Spectral accuracy of molecular ions in an LTQ/Orbitrap mass spectrometer and implications for elemental composition determination
    • Erve, J. C.; Gu, M.; Wang, Y.; DeMaio, W.; Talaat, R. E. Spectral accuracy of molecular ions in an LTQ/Orbitrap mass spectrometer and implications for elemental composition determination J. Am. Soc. Mass Spectrom. 2009, 20, 2058-69
    • (2009) J. Am. Soc. Mass Spectrom. , vol.20 , pp. 2058-2069
    • Erve, J.C.1    Gu, M.2    Wang, Y.3    Demaio, W.4    Talaat, R.E.5
  • 22
    • 58349086772 scopus 로고    scopus 로고
    • SIRIUS: Decomposing isotope patterns for metabolite identification
    • Böcker, S.; Letzel, M. C.; Liptak, Z.; Pervukhin, A. SIRIUS: decomposing isotope patterns for metabolite identification Bioinformatics 2009, 25, 218-24
    • (2009) Bioinformatics , vol.25 , pp. 218-224
    • Böcker, S.1    Letzel, M.C.2    Liptak, Z.3    Pervukhin, A.4
  • 23
    • 0001884644 scopus 로고
    • Individual Comparisons by Ranking Methods
    • Wilcoxon, F. Individual Comparisons by Ranking Methods Biom. Bull. 1945, 1, 80-83
    • (1945) Biom. Bull. , vol.1 , pp. 80-83
    • Wilcoxon, F.1


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