Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

BMC Genomics

Volumn 16, Issue 1, 2015, Pages

  Chopra, Ratan ^a   Burow, Gloria ^a   Hayes, Chad ^a   Emendack, Yves ^a   Xin, Zhanguo ^a   Burke, John ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

Cold stress; Gene based variants; RNAseq; Single nucleotide polymorphism; Sorghum; Transcriptome profiling

Indexed keywords

GLUTATHIONE TRANSFERASE; HEAT SHOCK PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTOME;

ABIOTIC STRESS; ARTICLE; COLD STRESS; COLD TOLERANCE; CONTROLLED STUDY; GENE EXPRESSION; GENE ONTOLOGY; GENETIC ANALYSIS; GENETIC DATABASE; GENETIC MARKER; GENETIC RESOURCE; GENETIC VARIABILITY; GENOTYPE; NONHUMAN; PLANT GENE; PLANT RESPONSE; QUANTITATIVE TRAIT LOCUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SEQUENCE; SINGLE NUCLEOTIDE POLYMORPHISM; SORGHUM; TEMPERATURE SENSITIVITY; UPREGULATION; VALIDATION STUDY; BIOLOGY; CHROMOSOMAL MAPPING; CLUSTER ANALYSIS; COLD; GENE EXPRESSION REGULATION; GENETICS; MOLECULAR GENETICS; NUCLEIC ACID DATABASE; PHENOTYPE; PHYSIOLOGICAL STRESS; PROCEDURES; REPRODUCIBILITY;

CHROMOSOME MAPPING; CLUSTER ANALYSIS; COLD TEMPERATURE; COMPUTATIONAL BIOLOGY; DATABASES, NUCLEIC ACID; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENOTYPE; MOLECULAR SEQUENCE ANNOTATION; PHENOTYPE; POLYMORPHISM, SINGLE NUCLEOTIDE; REPRODUCIBILITY OF RESULTS; SORGHUM; STRESS, PHYSIOLOGICAL; TRANSCRIPTOME;

EID: 84949681140     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-2268-8     Document Type: Article

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