Intestinal microbiota composition after antibiotic treatment in early life: The INCA study

BMC Pediatrics

Volumn 15, Issue 1, 2015, Pages

  Rutten, N B M M ^a   Rijkers, G T ^b   Meijssen, C B ^c   Crijns, C E ^d   Oudshoorn, J H ^e   van der Ent, C K ^f   Vlieger, A M ^a  

^a ST ANTONIUS HOSPITAL   (Netherlands)

^b Roosevelt Academy   (Netherlands)

^c MEANDER MEDICAL CENTER   (Netherlands)

^d TERGOOI HOSPITAL   (Netherlands)

^e GELRE HOSPITALS   (Netherlands)

^f UNIVERSITY MEDICAL CENTER UTRECHT   (Netherlands)

Author keywords

Allergic diseases; Antibiotics; Infant; Intestinal microbiota; Microbiota profiling

Indexed keywords

ANTIBIOTIC AGENT; RNA 16S; RNA 23S; ANTIINFECTIVE AGENT;

ARTICLE; COHORT ANALYSIS; CONTROLLED CLINICAL TRIAL; CONTROLLED STUDY; COUGHING; DIARRHEA; DRUG EFFICACY; EARLY LIFE DRUG EXPOSURE; ECZEMA; FECES ANALYSIS; FEVER; GENETIC SIMILARITY; HUMAN; INFANT; INTESTINE FLORA; MAJOR CLINICAL STUDY; MICROBIAL DIVERSITY; MUCOID OTITIS MEDIA; OBSERVATIONAL STUDY; OUTCOME ASSESSMENT; POPULATION ABUNDANCE; POPULATION EXPOSURE; PROSPECTIVE STUDY; RASH; RHINORRHEA; RISK ASSESSMENT; RISK BENEFIT ANALYSIS; WHEEZING; CLINICAL TRIAL; DRUG EFFECTS; FEMALE; FOLLOW UP; IMMUNOLOGY; INFECTION; INTESTINE MUCOSA; MALE; MICROBIOLOGY; MULTICENTER STUDY; NEWBORN; TIME FACTOR;

ANTI-BACTERIAL AGENTS; FEMALE; FOLLOW-UP STUDIES; GASTROINTESTINAL MICROBIOME; HUMANS; INFANT, NEWBORN; INFECTION; INTESTINAL MUCOSA; MALE; TIME FACTORS;

EID: 84949239155     PISSN: None     EISSN: 14712431     Source Type: Journal    
DOI: 10.1186/s12887-015-0519-0     Document Type: Article

References (53)

1. Adlerberth I. Factors influencing the establishment of the intestinal microbiota in infancy. Nestle Nutr Workshop Ser Pediatr Program. 2008;62:13-29. discussion 29-33.
2. Makino H, Kushiro A, Ishikawa E, Kubota H, Gawad A, Sakai T, et al. Motherto-infant transmission of intestinal bifidobacterial strains has an impact on the early development of vaginally delivered infant's microbiota. PLoS One. 2013;8:e78331.
3. Fraher MH, O'Toole PW, Quigley EMM. Techniques used to characterize the gut microbiota: a guide for the clinician. Nat Rev Gastroenterol Hepatol. 2012;9:312-22.
4. Bäckhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI. Host-bacterial mutualism in the human intestine. Science. 2005;307:1915-20.
5. Schaible UE, Kaufmann SHE. A nutritive view on the host-pathogen interplay. Trends Microbiol. 2005;13:373-80.
6. Hooper LV, Gordon JI. Commensal host-bacterial relationships in the gut. Science. 2001;292:1115-8.
7. Hooper LV, Midtvedt T, Gordon JI. How host-microbial interactions shape the nutrient environment of the mammalian intestine. Annu Rev Nutr. 2002;22:283-307.
8. Macpherson AJ, Harris NL. Interactions between commensal intestinal bacteria and the immune system. Nat Rev Immunol. 2004;4:478-85.
9. Sjögren YM, Tomicic S, Lundberg A, Böttcher MF, Björkstén B, Sverremark-Ekström E, et al. Influence of early gut microbiota on the maturation of childhood mucosal and systemic immune responses. Clin Exp Allergy. 2009;39:1842-51.
10. Grönlund MM, Arvilommi H, Kero P, Lehtonen OP, Isolauri E. Importance of intestinal colonisation in the maturation of humoral immunity in early infancy: a prospective follow up study of healthy infants aged 0-6 months. Arch Dis Child Fetal Neonatal Ed. 2000;83:F186-92.
11. Alm B, Erdes L, Möllborg P, Pettersson R, Norvenius SG, Aberg N, et al. Neonatal antibiotic treatment is a risk factor for early wheezing. Pediatrics. 2008;121:697-702.
12. Bisgaard H, Li N, Bonnelykke K, Chawes BLK, Skov T, Paludan-Müller G, et al. Reduced diversity of the intestinal microbiota during infancy is associated with increased risk of allergic disease at school age. J Allergy Clin Immunol. 2011;128:646-52. e1-5.
13. Li M, Wang M, Donovan SM. Early development of the gut microbiome and immune-mediated childhood disorders. Semin Reprod Med. 2014;32:74-86.
14. Ringel-Kulka T, Cheng J, Ringel Y, Salojärvi J, Carroll I, Palva A, et al. Intestinal microbiota in healthy U.S. young children and adults-a high throughput microarray analysis. PLoS One. 2013;8:e64315.
15. Bedford Russell a R, Murch SH. Could peripartum antibiotics have delayed health consequences for the infant? BJOG. 2006;113:758-65.
16. Caramia G, Atzei A, Fanos V. Probiotics and the skin. Clin Dermatol. 2008;26:4-11.
17. Verhulst SL, Vael C, Beunckens C, Nelen V, Goossens H, Desager K. A longitudinal analysis on the association between antibiotic use, intestinal microflora, and wheezing during the first year of life. J Asthma. 2008;45:828-32.
18. Penders J, Stobberingh EE, Thijs C, Adams H, Vink C, van Ree R, et al. Molecular fingerprinting of the intestinal microbiota of infants in whom atopic eczema was or was not developing. Clin Exp Allergy. 2006;36:1602-8.
19. Kalliomäki M, Collado MC, Salminen S, Isolauri E. Early differences in fecal microbiota composition in children may predict overweight. Am J Clin Nutr. 2008;87:534-8.
20. Reinhardt C, Reigstad CS, Bäckhed F. Intestinal microbiota during infancy and its implications for obesity. J Pediatr Gastroenterol Nutr. 2009;48:249-56.
21. Marra F, Lynd L, Coombes M, Richardson K, Legal M, Fitzgerald JM, et al. Does antibiotic exposure during infancy lead to development of asthma?: a systematic review and metaanalysis. Chest. 2006;129:610-8.
22. Musso G, Gambino R, Cassader M. Interactions between gut microbiota and host metabolism predisposing to obesity and diabetes. Annu Rev Med. 2011;62:361-80.
23. Abraham C, Medzhitov R. Interactions between the host innate immune system and microbes in inflammatory bowel disease. Gastroenterology. 2011;140:1729-37.
24. Cox LM, Yamanishi S, Sohn J, Alekseyenko AV, Leung JM, Cho I, et al. Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences. Cell. 2014;158:705-21.
25. Saulnier DM, Riehle K, Mistretta T-A, Diaz M-A, Mandal D, Raza S, et al. Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome. Gastroenterology. 2011;141:1782-91.
26. Savino F, Cordisco L, Tarasco V, Calabrese R, Palumeri E, Matteuzzi D. Molecular identification of coliform bacteria from colicky breastfed infants. Acta Paediatr. 2009;98:1582-8.
27. Adlerberth I, Wold a E. Establishment of the gut microbiota in Western infants. Acta Paediatr. 2009;98:229-38.
28. Penders J, Thijs C, Vink C, Stelma FF, Snijders B, Kummeling I, et al. Factors influencing the composition of the intestinal microbiota in early infancy. Pediatrics. 2006;118:511-21.
29. Arrieta M-C, Stiemsma LT, Amenyogbe N, Brown EM, Finlay B. The Intestinal Microbiome in Early Life: Health and Disease. Front Immunol. 2014;5:427.
30. Penders J, Kummeling I, Thijs C. Infant antibiotic use and wheeze and asthma risk: a systematic review and meta-analysis. Eur Respir J. 2011;38:295-302.
31. Azad MB, Bridgman SL, Becker AB, Kozyrskyj AL. Infant antibiotic exposure and the development of childhood overweight and central adiposity. Int J Obes (Lond). 2014;38:1290-8.
32. Gough EK, Moodie EEM, Prendergast AJ, Johnson SMA, Humphrey JH, Stoltzfus RJ, et al. The impact of antibiotics on growth in children in low and middle income countries: systematic review and meta-analysis of randomised controlled trials. BMJ. 2014;348:g2267.
33. Trasande L, Blustein J, Liu M, Corwin E, Cox LM, Blaser MJ. Infant antibiotic exposures and early-life body mass. Int J Obes (Lond). 2013;37:16-23.
34. Tanaka S, Kobayashi T, Songjinda P, Tateyama A, Tsubouchi M, Kiyohara C, et al. Influence of antibiotic exposure in the early postnatal period on the development of intestinal microbiota. FEMS Immunol Med Microbiol. 2009;56:80-7.
35. Hussey S, Wall R, Gruffman E, O'Sullivan L, Ryan CA, Murphy B, et al. Parenteral antibiotics reduce bifidobacteria colonization and diversity in neonates. Int J Microbiol. 2011;2011.
36. Bennet R, Eriksson M, Nord CE. The fecal microflora of 1-3-month-old infants during treatment with eight oral antibiotics. Infection. 2002;30:158-60.
37. Chang JY, Shin SM, Chun J, Lee J-H, Seo J-K. Pyrosequencing-based molecular monitoring of the intestinal bacterial colonization in preterm infants. J Pediatr Gastroenterol Nutr. 2011;53:512-9.
38. Rougé C, Goldenberg O, Ferraris L, Berger B, Rochat F, Legrand A, et al. Investigation of the intestinal microbiota in preterm infants using different methods. Anaerobe. 2010;16:362-70.
39. Mai X-M, Kull I, Wickman M. Bergström a: Antibiotic use in early life and development of allergic diseases: respiratory infection as the explanation. Clin Exp Allergy. 2010;40:1230-7.
40. Bentsen BG. International classification of primary care. Scand J Prim Health Care. 1986;4:43-50.
41. Budding a E, Grasman ME, Lin F, Bogaards J A, Soeltan-Kaersenhout DJ, Vandenbroucke-Grauls CMJE, et al. IS-pro: high-throughput molecular fingerprinting of tHe intestinal microbiota. FASEB J. 2010;24:4556-64.
42. Haegeman B, Hamelin J, Moriarty J, Neal P, Dushoff J, Weitz JS. Robust estimation of microbial diversity in theory and in practice. ISME J. 2013;7:1092-101.
43. Boyle RJ, Bath-Hextall FJ, Leonardi-Bee J, Murrell DF, Tang ML: Probiotics for treating eczema. Cochrane database Syst Rev 2008:(4):CD006135. doi:10.1002/14651858.CD006135.
44. Niers L, Martín R, Rijkers G, Sengers F, Timmerman H, van Uden N, et al. The effects of selected probiotic strains on the development of eczema (the PandA study). Allergy. 2009;64:1349-58.
45. Lucassen P. Colic in infants. BMJ Clin Evid. 2010;2010.
46. Matricardi PM, Illi S, Grüber C, Keil T, Nickel R, Wahn U, et al. Wheezing in childhood: incidence, longitudinal patterns and factors predicting persistence. Eur Respir J. 2008;32:585-92.
47. Kummeling I, Stelma FF, Dagnelie PC, Snijders BEP, Penders J, Huber M, et al. Early life exposure to antibiotics and the subsequent development of eczema, wheeze, and allergic sensitization in the first 2 years of life: the KOALA Birth Cohort Study. Pediatrics. 2007;119:e225-31.
48. Celedón JC, Litonjua AA, Ryan L, Weiss ST, Gold DR. Lack of association between antibiotic use in the first year of life and asthma, allergic rhinitis, or eczema at age 5 years. Am J Respir Crit Care Med. 2002;166:72-5.
49. Savino F, Roana J, Mandras N, Tarasco V, Locatelli E, Tullio V. Faecal microbiota in breast-fed infants after antibiotic therapy. Acta Paediatr. 2011;100:75-8.
50. Maukonen J, Simões C, Saarela M. The currently used commercial DNAextraction methods give different results of clostridial and actinobacterial populations derived from human fecal samples. FEMS Microbiol Ecol. 2012;79:697-708.
51. Bahl MI, Bergström A, Licht TR. Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis. FEMS Microbiol Lett. 2012;329:193-7.
52. Echarri PP, Graciá CM, Berruezo GR, Vives I, Ballesta M, Solís G, et al. Assessment of intestinal microbiota of full-term breast-fed infants from two different geographical locations. Early Hum Dev. 2011;87:511-3.
53. Marques TM, Wall R, Ross RP, Fitzgerald GF, Ryan CA, Stanton C. Programming infant gut microbiota: influence of dietary and environmental factors. Curr Opin Biotechnol. 2010;21:149-56.