-
1
-
-
84996022132
-
Microflora in the digestive tract of inshore fish in Japan
-
Aiso, K., Simidu, U., and Hasuo, K. (1968). Microflora in the digestive tract of inshore fish in Japan. Microbiology 52, 361-364.
-
(1968)
Microbiology
, vol.52
, pp. 361-364
-
-
Aiso, K.1
Simidu, U.2
Hasuo, K.3
-
2
-
-
0001818828
-
r- and K-selection and microbial ecology
-
Advances in Microbial Ecology., ed. K. C. Marshall (Springer US)
-
Andrews, J., and Harris, R. (1986). "r- and K-selection and microbial ecology," in Advances in Microbial Ecology SE - 3 Advances in Microbial Ecology., ed. K. C. Marshall (Springer US), 99-147. doi:10.1007/978-1-4757-0611-6_3.
-
(1986)
in Advances in Microbial Ecology SE - 3
, pp. 99-147
-
-
Andrews, J.1
Harris, R.2
-
4
-
-
78650854393
-
The origin of the Haitian cholera outbreak strain
-
Chin, C.-S., Sorenson, J., Harris, J. B., Robins, W. P., Charles, R. C., Jean-Charles, R. R., Bullard, J., Webster, D. R., Kasarskis, A., Peluso, P., et al. (2011). The origin of the Haitian cholera outbreak strain. N. Engl. J. Med. 364, 33-42. doi:10.1056/NEJMoa1012928.
-
(2011)
N. Engl. J. Med
, vol.364
, pp. 33-42
-
-
Chin, C.-S.1
Sorenson, J.2
Harris, J.B.3
Robins, W.P.4
Charles, R.C.5
Jean-Charles, R.R.6
Bullard, J.7
Webster, D.R.8
Kasarskis, A.9
Peluso, P.10
-
5
-
-
84865832282
-
Ecological populations of bacteria act as socially cohesive units of antibiotic production and resistance
-
Cordero, O. X., Wildschutte, H., Kirkup, B., Proehl, S., Ngo, L., Hussain, F., Le Roux, F., Mincer, T., and Polz, M. F. (2012). Ecological populations of bacteria act as socially cohesive units of antibiotic production and resistance. Science 337, 1228-31. doi:10.1126/science.1219385.
-
(2012)
Science
, vol.337
, pp. 1228-1231
-
-
Cordero, O.X.1
Wildschutte, H.2
Kirkup, B.3
Proehl, S.4
Ngo, L.5
Hussain, F.6
Le Roux, F.7
Mincer, T.8
Polz, M.F.9
-
6
-
-
80055041479
-
Exploring the Diversity of Gardnerella vaginalis in the Genitourinary Tract Microbiota of Monogamous Couples Through Subtle Nucleotide Variation
-
Eren, A. M., Zozaya, M., Taylor, C. M., Dowd, S. E., Martin, D. H., and Ferris, M. J. (2011). Exploring the Diversity of Gardnerella vaginalis in the Genitourinary Tract Microbiota of Monogamous Couples Through Subtle Nucleotide Variation. PLoS One 6, e26732. doi:10.1371/journal.pone.0026732.
-
(2011)
PLoS One
, vol.6
-
-
Eren, A.M.1
Zozaya, M.2
Taylor, C.M.3
Dowd, S.E.4
Martin, D.H.5
Ferris, M.J.6
-
7
-
-
84889649570
-
Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data
-
Eren, M., Maignien, L., Sul, W. J., Murphy, L. G., Grim, S. L., Morrison, H. G., and Sogin, M. L. (2013a). Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data. Methods Ecol. Evol. 4, 1111-1119. doi:10.1111/2041-210X.12114.
-
(2013)
Methods Ecol. Evol
, vol.4
, pp. 1111-1119
-
-
Eren, M.1
Maignien, L.2
Sul, W.J.3
Murphy, L.G.4
Grim, S.L.5
Morrison, H.G.6
Sogin, M.L.7
-
8
-
-
84927697837
-
A single genus in the gut microbiome reflects host preference and specificity
-
Eren, M., Sogin, M. L., Morrison, H. G., Vineis, J. H., Fisher, J. C., Newton, R. J., and McLellan, S. L. (2014). A single genus in the gut microbiome reflects host preference and specificity. ISME J., 1-11. doi:10.1038/ismej.2014.97.
-
(2014)
ISME J
, pp. 1-11
-
-
Eren, M.1
Sogin, M.L.2
Morrison, H.G.3
Vineis, J.H.4
Fisher, J.C.5
Newton, R.J.6
McLellan, S.L.7
-
9
-
-
84879138105
-
A filtering method to generate high quality short reads using Illumina paired-end technology
-
Eren, M., Vineis, J. H., Morrison, H. G., and Sogin, M. L. (2013b). A filtering method to generate high quality short reads using Illumina paired-end technology. PLoS One 8, e66643.
-
(2013)
PLoS One
, vol.8
-
-
Eren, M.1
Vineis, J.H.2
Morrison, H.G.3
Sogin, M.L.4
-
10
-
-
84913562103
-
A single genus in the gut microbiome reflects host preference and specificity
-
Eren, M., Sogin M., Morrison, H., Vineis, J., Fisher, J., Newton, R., McLellan, S. (2014). A single genus in the gut microbiome reflects host preference and specificity. ISME J. 1-11.
-
(2014)
ISME J
, pp. 1-11
-
-
Eren, M.1
Sogin, M.2
Morrison, H.3
Vineis, J.4
Fisher, J.5
Newton, R.6
McLellan, S.7
-
11
-
-
84864624471
-
The state of world fisheries and aquaculture
-
FAO Fisheries and Aquaculture Department
-
FAO (2012). The state of world fisheries and aquaculture. FAO Fisheries and Aquaculture Department.
-
(2012)
-
-
-
12
-
-
84855958621
-
Defining seasonal marine microbial community dynamics
-
Gilbert, J. A., Steele, J. A., Caporaso, J. G., Steinbrück, L., Reeder, J., Temperton, B., Huse, S., McHardy, A. C., Knight, R., Joint, I., et al. (2012). Defining seasonal marine microbial community dynamics. ISME J. 6, 298-308.
-
(2012)
ISME J
, vol.6
, pp. 298-308
-
-
Gilbert, J.A.1
Steele, J.A.2
Caporaso, J.G.3
Steinbrück, L.4
Reeder, J.5
Temperton, B.6
Huse, S.7
McHardy, A.C.8
Knight, R.9
Joint, I.10
-
13
-
-
3142723417
-
Molecular identification of Vibrio harveyi-related isolates associated with diseased aquatic organisms
-
Gomez-Gil, B., Soto-Rodríguez, S., García-Gasca, A., Roque, A., Vazquez-Juarez, R., Thompson, F. L., and Swings, J. (2004). Molecular identification of Vibrio harveyi-related isolates associated with diseased aquatic organisms. Microbiology 150, 1769-77. doi:10.1099/mic.0.26797 0.
-
(2004)
Microbiology
, vol.150
, pp. 1769-1777
-
-
Gomez-Gil, B.1
Soto-Rodríguez, S.2
García-Gasca, A.3
Roque, A.4
Vazquez-Juarez, R.5
Thompson, F.L.6
Swings, J.7
-
14
-
-
17144462135
-
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
-
Heidelberg, J. F., Eisen, J. a, Nelson, W. C., Clayton, R. a, Gwinn, M. L., Dodson, R. J., Haft, D. H., Hickey, E. K., Peterson, J. D., Umayam, L., et al. (2000). DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature 406, 477-83. doi:10.1038/35020000.
-
(2000)
Nature
, vol.406
, pp. 477-483
-
-
Heidelberg, J.F.1
Eisen, J.a.2
Nelson, W.C.3
Clayton, R.a.4
Gwinn, M.L.5
Dodson, R.J.6
Haft, D.H.7
Hickey, E.K.8
Peterson, J.D.9
Umayam, L.10
-
15
-
-
44449178480
-
Resource partitioning and sympatric differentiation among closely related bacterioplankton
-
Hunt, D. E., David, L. A., Gevers, D., Preheim, S. P., Alm, E. J., and Polz, M. F. (2008). Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science (80-.). 320, 1081-1085. doi:10.1126/science.1157890.
-
(2008)
Science
, vol.80
, Issue.320
, pp. 1081-1085
-
-
Hunt, D.E.1
David, L.A.2
Gevers, D.3
Preheim, S.P.4
Alm, E.J.5
Polz, M.F.6
-
16
-
-
57149093416
-
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing
-
Huse, S. M., Dethlefsen, L., Huber, J., Mark Welch, D., Welch, D. M., Relman, D., and Sogin, M. L. (2008). Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet. 4, e1000255. doi:10.1371/journal.pgen.1000255.
-
(2008)
PLoS Genet
, vol.4
-
-
Huse, S.M.1
Dethlefsen, L.2
Huber, J.3
Mark Welch, D.4
Welch, D.M.5
Relman, D.6
Sogin, M.L.7
-
17
-
-
84905009868
-
The polycyclic aromatic hydrocarbon degradation potential of Gulf of Mexico native coastal microbial communities after the Deepwater Horizon oil spill
-
Kappell, A. D., Wei, Y., Newton, R. J., Van Nostrand, J. D., Zhou, J., McLellan, S. L., and Hristova, K. R. (2014). The polycyclic aromatic hydrocarbon degradation potential of Gulf of Mexico native coastal microbial communities after the Deepwater Horizon oil spill. Front. Microbiol. 5, 205. doi:10.3389/fmicb.2014.00205.
-
(2014)
Front. Microbiol
, vol.5
, pp. 205
-
-
Kappell, A.D.1
Wei, Y.2
Newton, R.J.3
Van Nostrand, J.D.4
Zhou, J.5
McLellan, S.L.6
Hristova, K.R.7
-
18
-
-
0028878001
-
Symbiotic role of the viable but nonculturable state of Vibrio fischeri in Hawaiian coastal seawater
-
Lee, K., and Ruby, E. G. (1995). Symbiotic role of the viable but nonculturable state of Vibrio fischeri in Hawaiian coastal seawater. Appl. Environ. Microbiol. 61, 278-83.
-
(1995)
Appl. Environ. Microbiol
, vol.61
, pp. 278-283
-
-
Lee, K.1
Ruby, E.G.2
-
19
-
-
79960004119
-
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
-
Letunic, I., and Bork, P. (2011). Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 39, W475-W478. doi:10.1093/nar/gkr201.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W475-W478
-
-
Letunic, I.1
Bork, P.2
-
20
-
-
0342308842
-
Quantitative variations in the bacterial flora of flatfish
-
Liston, J. (1956). Quantitative variations in the bacterial flora of flatfish. J. Gen. Microbiol. 15, 305- 14.
-
(1956)
J. Gen. Microbiol
, vol.15
, pp. 305-314
-
-
Liston, J.1
-
21
-
-
0004294399
-
-
11th ed., eds. M. Madigan and J. Martinko Prentice Hall: Springer
-
Madigan, M., and Martinko, J. (2005). Brock Biology of Microorganisms. 11th ed., eds. M. Madigan and J. Martinko Prentice Hall: Springer.
-
(2005)
Brock Biology of Microorganisms
-
-
Madigan, M.1
Martinko, J.2
-
22
-
-
84949134554
-
Regulating the transition of Vibrio cholerae out of the host
-
eds. E. Vasil and A. Darwin (Washington, DC: ASM Press)
-
McDonough, E., Bradley, E., and Camilli, A. (2013). "Regulating the transition of Vibrio cholerae out of the host," in Regulation of Bacterial Virulence, eds. E. Vasil and A. Darwin (Washington, DC: ASM Press), 566-578.
-
(2013)
in Regulation of Bacterial Virulence
, pp. 566-578
-
-
McDonough, E.1
Bradley, E.2
Camilli, A.3
-
23
-
-
80053133499
-
Evidence for several waves of global transmission in the seventh cholera pandemic
-
Mutreja, A., Kim, D. W., Thomson, N. R., Connor, T. R., Lee, J. H., Kariuki, S., Croucher, N. J., Choi, S. Y., Harris, S. R., Lebens, M., et al. (2011). Evidence for several waves of global transmission in the seventh cholera pandemic. Nature 477, 462-5. doi:10.1038/nature10392.
-
(2011)
Nature
, vol.477
, pp. 462-465
-
-
Mutreja, A.1
Kim, D.W.2
Thomson, N.R.3
Connor, T.R.4
Lee, J.H.5
Kariuki, S.6
Croucher, N.J.7
Choi, S.Y.8
Harris, S.R.9
Lebens, M.10
-
24
-
-
84949141103
-
-
Vegan: Community Ecology Package
-
Oksanen, J., Blanchet, G., Kindt, R., Legendre, P., O'Hara, R., Simpson, G., Solymos, P., Stevens, H., and Wagner, H. (2012). Vegan: Community Ecology Package.
-
(2012)
-
-
Oksanen, J.1
Blanchet, G.2
Kindt, R.3
Legendre, P.4
O'Hara, R.5
Simpson, G.6
Solymos, P.7
Stevens, H.8
Wagner, H.9
-
25
-
-
78650792359
-
Metapopulation structure of Vibrionaceae among coastal marine invertebrates
-
Preheim, S. P., Boucher, Y., Wildschutte, H., David, L. a, Veneziano, D., Alm, E. J., and Polz, M. F. (2011a). Metapopulation structure of Vibrionaceae among coastal marine invertebrates. Environ. Microbiol. 13, 265-75. doi:10.1111/j.1462-2920.2010.02328.x.
-
(2011)
Environ. Microbiol
, vol.13
, pp. 265-275
-
-
Preheim, S.P.1
Boucher, Y.2
Wildschutte, H.3
David, L.a.4
Veneziano, D.5
Alm, E.J.6
Polz, M.F.7
-
26
-
-
82955240516
-
Merging taxonomy with ecological population prediction in a case study of Vibrionaceae
-
Preheim, S. P., Timberlake, S., and Polz, M. F. (2011b). Merging taxonomy with ecological population prediction in a case study of Vibrionaceae. Appl. Environ. Microbiol. 77, 7195-206. doi:10.1128/AEM.00665-11.
-
(2011)
Appl. Environ. Microbiol
, vol.77
, pp. 7195-7206
-
-
Preheim, S.P.1
Timberlake, S.2
Polz, M.F.3
-
27
-
-
0036283905
-
Entry of Vibrio harveyi and Vibrio fischeri into the viable but nonculturable state
-
Ramaiah, N., Ravel, J., Straube, W. L., Hill, R. T., and Colwell, R. R. (2002). Entry of Vibrio harveyi and Vibrio fischeri into the viable but nonculturable state. J. Appl. Microbiol. 93, 108-16.
-
(2002)
J. Appl. Microbiol
, vol.93
, pp. 108-116
-
-
Ramaiah, N.1
Ravel, J.2
Straube, W.L.3
Hill, R.T.4
Colwell, R.R.5
-
28
-
-
84901263103
-
Host-specificity among abundant and rare taxa in the sponge microbiome
-
Reveillaud, J., Maignien, L., Murat Eren, a, Huber, J. a, Apprill, A., Sogin, M. L., and Vanreusel, A. (2014). Host-specificity among abundant and rare taxa in the sponge microbiome. ISME J. 8, 1198-209. doi:10.1038/ismej.2013.227.
-
(2014)
ISME J
, vol.8
, pp. 1198-1209
-
-
Reveillaud, J.1
Maignien, L.2
Murat Eren, a.3
Huber, J.a.4
Apprill, A.5
Sogin, M.L.6
Vanreusel, A.7
-
29
-
-
0017274869
-
Symbiotic association of Photobacterium fischeri with the marine luminous fish Monocentris japonica:amodelof symbiosis based on bacterial studies
-
Ruby, E., and Nealson, K. (1976). Symbiotic association of Photobacterium fischeri with the marine luminous fish Monocentris japonica:amodelof symbiosis based on bacterial studies. Biol. Bullitian 151, 547-586.
-
(1976)
Biol. Bullitian
, vol.151
, pp. 547-586
-
-
Ruby, E.1
Nealson, K.2
-
30
-
-
84949141104
-
Toxin and virulence regulation in Vibrio cholerae
-
eds. M. Vasil and A. Darwin (Washington, DC: ASM Press)
-
Skorupski, J., and Taylor, R. (2013). "Toxin and virulence regulation in Vibrio cholerae," in Regulation of Bacterial Virulence, eds. M. Vasil and A. Darwin (Washington, DC: ASM Press), 241-262.
-
(2013)
Regulation of Bacterial Virulence
, pp. 241-262
-
-
Skorupski, J.1
Taylor, R.2
-
31
-
-
84876055128
-
Reproducibility of Vibrionaceae population structure in coastal bacterioplankton
-
Szabo, G., Preheim, S. P., Kauffman, K. M., David, L. a, Shapiro, J., Alm, E. J., and Polz, M. F. (2013). Reproducibility of Vibrionaceae population structure in coastal bacterioplankton. ISME J. 7, 509-19. doi:10.1038/ismej.2012.134.
-
(2013)
ISME J
, vol.7
, pp. 509-519
-
-
Szabo, G.1
Preheim, S.P.2
Kauffman, K.M.3
David, L.a.4
Shapiro, J.5
Alm, E.J.6
Polz, M.F.7
-
32
-
-
84897665837
-
Associations and dynamics of Vibrionaceae in the environment, from the genus to the population level
-
Takemura, A. F., Chien, D. M., and Polz, M. F. (2014). Associations and dynamics of Vibrionaceae in the environment, from the genus to the population level. Front. Microbiol. 5, 38. doi:10.3389/fmicb.2014.00038.
-
(2014)
Front. Microbiol
, vol.5
, pp. 38
-
-
Takemura, A.F.1
Chien, D.M.2
Polz, M.F.3
-
33
-
-
25144436280
-
Phylogeny and molecular identification of Vibrios on the basis of multilocus sequence analysis phylogeny
-
Thompson, F. L., Gevers, D., Thompson, C. C., Dawyndt, P., Hoste, B., Munn, C. B., and Swings, J. (2005). Phylogeny and molecular identification of Vibrios on the basis of multilocus sequence analysis phylogeny. Appl. Environ. Microbiol. 71, 5107-5115. doi:10.1128/AEM.71.9.5107.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 5107-5115
-
-
Thompson, F.L.1
Gevers, D.2
Thompson, C.C.3
Dawyndt, P.4
Hoste, B.5
Munn, C.B.6
Swings, J.7
-
34
-
-
84880114792
-
Life in the "Plastisphere": Microbial communities on plastic marine debris
-
Zettler, E. R., Mincer, T. J., and Amaral-Zettler, L. A. (2013). Life in the "Plastisphere": Microbial communities on plastic marine debris. Environ. Sci. Technol. 47, 7137-7146. doi:10.1021/es401288x.
-
(2013)
Environ. Sci. Technol
, vol.47
, pp. 7137-7146
-
-
Zettler, E.R.1
Mincer, T.J.2
Amaral-Zettler, L.A.3
|