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Volumn 11, Issue 11, 2015, Pages

Non-Human Primates Harbor Diverse Mammalian and Avian Astroviruses Including Those Associated with Human Infections

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; ASTROVIRUS INFECTION; DIARRHEA; DISEASE SURVEILLANCE; DISEASE TRANSMISSION; ENCEPHALITIS; ENZYME LINKED IMMUNOSORBENT ASSAY; GENETIC ANALYSIS; GENOTYPING TECHNIQUE; NEXT GENERATION SEQUENCING; NONHUMAN; PATHOGENESIS; PHYLOGENY; PRIMATE DISEASE; RNA ISOLATION; VIRUS RECOMBINATION; ANIMAL; ASTROVIRIDAE INFECTIONS; EVOLUTION; FECES; GENETICS; GENOTYPE; HUMAN; MACACA; SPECIES DIFFERENCE; VIROLOGY;

EID: 84948965128     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1005225     Document Type: Article
Times cited : (65)

References (42)
  • 4
    • 80053571690 scopus 로고    scopus 로고
    • Astrovirus infections in humans and animals—molecular biology, genetic diversity, and interspecies transmissions
    • De Benedictis P, Schultz-Cherry S, Burnham A, Cattoli G, (2011) Astrovirus infections in humans and animals—molecular biology, genetic diversity, and interspecies transmissions. Infect Genet Evol 11: 1529–1544. doi: 10.1016/j.meegid.2011.07.024 21843659
    • (2011) Infect Genet Evol , vol.11 , pp. 1529-1544
    • De Benedictis, P.1    Schultz-Cherry, S.2    Burnham, A.3    Cattoli, G.4
  • 5
    • 84931083758 scopus 로고    scopus 로고
    • Ecological Drivers of Virus Evolution: Astrovirus as a Case Study
    • Mendenhall IH, Smith GJ, Vijaykrishna D, (2015) Ecological Drivers of Virus Evolution: Astrovirus as a Case Study. J Virol 89: 6978–6981. doi: 10.1128/JVI.02971-14 25948751
    • (2015) J Virol , vol.89 , pp. 6978-6981
    • Mendenhall, I.H.1    Smith, G.J.2    Vijaykrishna, D.3
  • 7
    • 84872193015 scopus 로고    scopus 로고
    • Comparison of novel MLB-clade, VA-clade and classic human astroviruses highlights constrained evolution of the classic human astrovirus nonstructural genes
    • Jiang H, Holtz LR, Bauer I, Franz CJ, Zhao G, et al. (2013) Comparison of novel MLB-clade, VA-clade and classic human astroviruses highlights constrained evolution of the classic human astrovirus nonstructural genes. Virology 436: 8–14. doi: 10.1016/j.virol.2012.09.040 23084422
    • (2013) Virology , vol.436 , pp. 8-14
    • Jiang, H.1    Holtz, L.R.2    Bauer, I.3    Franz, C.J.4    Zhao, G.5
  • 9
    • 84938062209 scopus 로고    scopus 로고
    • Detection of a mammalian-like astrovirus in bird, European roller (Coracias garrulus)
    • Pankovics P, Boros A, Kiss T, Delwart E, Reuter G, (2015) Detection of a mammalian-like astrovirus in bird, European roller (Coracias garrulus). Infect Genet Evol 34: 114–121. doi: 10.1016/j.meegid.2015.06.020 26096774
    • (2015) Infect Genet Evol , vol.34 , pp. 114-121
    • Pankovics, P.1    Boros, A.2    Kiss, T.3    Delwart, E.4    Reuter, G.5
  • 10
    • 63849266254 scopus 로고    scopus 로고
    • Detection of newly described astrovirus MLB1 in stool samples from children
    • Finkbeiner SR, Le BM, Holtz LR, Storch GA, Wang D, (2009) Detection of newly described astrovirus MLB1 in stool samples from children. Emerg Infect Dis 15: 441–444. doi: 10.3201/eid1503.081213 19239759
    • (2009) Emerg Infect Dis , vol.15 , pp. 441-444
    • Finkbeiner, S.R.1    Le, B.M.2    Holtz, L.R.3    Storch, G.A.4    Wang, D.5
  • 11
    • 73149121117 scopus 로고    scopus 로고
    • Characterization of phylogenetically diverse astroviruses of marine mammals
    • Rivera R, Nollens HH, Venn-Watson S, Gulland FM, Wellehan JF, Jr. (2010) Characterization of phylogenetically diverse astroviruses of marine mammals. J Gen Virol 91: 166–173. doi: 10.1099/vir.0.015222-0 19759240
    • (2010) J Gen Virol , vol.91 , pp. 166-173
    • Rivera, R.1    Nollens, H.H.2    Venn-Watson, S.3    Gulland, F.M.4    Wellehan, J.F.5
  • 12
    • 43949129765 scopus 로고    scopus 로고
    • Characterization of a Rhesus Monkey Calicivirus Representing a New Genus of Caliciviridae
    • Farkas T, Sestak K, Wei C, Jiang X, (2008) Characterization of a Rhesus Monkey Calicivirus Representing a New Genus of Caliciviridae. Journal of Virology 82: 5408–5416. doi: 10.1128/JVI.00070-08 18385231
    • (2008) Journal of Virology , vol.82 , pp. 5408-5416
    • Farkas, T.1    Sestak, K.2    Wei, C.3    Jiang, X.4
  • 13
    • 84871962600 scopus 로고    scopus 로고
    • Characterizing the picornavirus landscape among synanthropic nonhuman primates in Bangladesh, 2007 to 2008
    • Oberste MS, Feeroz MM, Maher K, Nix WA, Engel GA, et al. (2013) Characterizing the picornavirus landscape among synanthropic nonhuman primates in Bangladesh, 2007 to 2008. J Virol 87: 558–571. doi: 10.1128/JVI.00837-12 23097448
    • (2013) J Virol , vol.87 , pp. 558-571
    • Oberste, M.S.1    Feeroz, M.M.2    Maher, K.3    Nix, W.A.4    Engel, G.A.5
  • 14
    • 77956632988 scopus 로고    scopus 로고
    • Genetic Diversity and Histo-Blood Group Antigen Interactions of Rhesus Enteric Caliciviruses
    • Farkas T, Cross RW, Hargitt E, Lerche NW, Morrow AL, et al. (2010) Genetic Diversity and Histo-Blood Group Antigen Interactions of Rhesus Enteric Caliciviruses. Journal of Virology 84: 8617–8625. doi: 10.1128/JVI.00630-10 20554772
    • (2010) Journal of Virology , vol.84 , pp. 8617-8625
    • Farkas, T.1    Cross, R.W.2    Hargitt, E.3    Lerche, N.W.4    Morrow, A.L.5
  • 15
    • 0020381884 scopus 로고
    • Enteric viruses of nonhuman primates
    • Kalter SS, (1982) Enteric viruses of nonhuman primates. Vet Pathol Suppl 7: 33–43. 6293149
    • (1982) Vet Pathol Suppl , vol.7 , pp. 33-43
    • Kalter, S.S.1
  • 18
  • 19
    • 50949127759 scopus 로고    scopus 로고
    • Novel astroviruses in insectivorous bats
    • Chu DKW, Poon LLM, Guan Y, Peris JSM, (2008) Novel astroviruses in insectivorous bats. J Virol 82: 9107–9114. doi: 10.1128/JVI.00857-08 18550669
    • (2008) J Virol , vol.82 , pp. 9107-9114
    • Chu, D.K.W.1    Poon, L.L.M.2    Guan, Y.3    Peris, J.S.M.4
  • 20
    • 55149116731 scopus 로고    scopus 로고
    • Complete genome sequence of a highly divergent astrovirus isolated from a child with acute diarrhea
    • Finkbeiner SR, Kirkwood CD, Wang D, (2008) Complete genome sequence of a highly divergent astrovirus isolated from a child with acute diarrhea. Virology Journal 5.
    • (2008) Virology Journal , vol.5
    • Finkbeiner, S.R.1    Kirkwood, C.D.2    Wang, D.3
  • 21
    • 70349731723 scopus 로고    scopus 로고
    • Identification of a novel astrovirus (astrovirus VA1) associated with an outbreak of acute gastroenteritis
    • Finkbeiner SR, Li Y, Ruone S, Conrardy C, Gregoricus N, et al. (2009) Identification of a novel astrovirus (astrovirus VA1) associated with an outbreak of acute gastroenteritis. J Virol 83: 10836–10839. doi: 10.1128/JVI.00998-09 19706703
    • (2009) J Virol , vol.83 , pp. 10836-10839
    • Finkbeiner, S.R.1    Li, Y.2    Ruone, S.3    Conrardy, C.4    Gregoricus, N.5
  • 22
    • 84901293457 scopus 로고    scopus 로고
    • Detection of Antibodies against Turkey Astrovirus in Humans
    • Meliopoulos VA, Kayali G, Burnham A, Oshansky CM, Thomas PG, et al. (2014) Detection of Antibodies against Turkey Astrovirus in Humans. PLoS ONE 9: e96934. doi: 10.1371/journal.pone.0096934 24826893
    • (2014) PLoS ONE , vol.9 , pp. 96934
    • Meliopoulos, V.A.1    Kayali, G.2    Burnham, A.3    Oshansky, C.M.4    Thomas, P.G.5
  • 24
    • 80655142520 scopus 로고    scopus 로고
    • The fecal virome of pigs on a high-density farm
    • Shan T, Li L, Simmonds P, Wang C, Moeser A, et al. (2011) The fecal virome of pigs on a high-density farm. J Virol 85: 11697–11708. doi: 10.1128/JVI.05217-11 21900163
    • (2011) J Virol , vol.85 , pp. 11697-11708
    • Shan, T.1    Li, L.2    Simmonds, P.3    Wang, C.4    Moeser, A.5
  • 25
    • 84905575858 scopus 로고    scopus 로고
    • Detection and Characterization of Avastrovirus Associated with Diarrhea Isolated from Minks in China
    • Sun N, Yang Y, Wang G-S, Shao X-Q, Zhang S-Q, et al. (2014) Detection and Characterization of Avastrovirus Associated with Diarrhea Isolated from Minks in China. Food and Environmental Virology 6: 169–174. doi: 10.1007/s12560-014-9155-3 24915926
    • (2014) Food and Environmental Virology , vol.6 , pp. 169-174
    • Sun, N.1    Yang, Y.2    Wang, G.-S.3    Shao, X.-Q.4    Zhang, S.-Q.5
  • 26
    • 67650757433 scopus 로고    scopus 로고
    • TrimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
    • Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T, (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25: 1972–1973. doi: 10.1093/bioinformatics/btp348 19505945
    • (2009) Bioinformatics , vol.25 , pp. 1972-1973
    • Capella-Gutiérrez, S.1    Silla-Martínez, J.M.2    Gabaldón, T.3
  • 27
    • 33646167864 scopus 로고    scopus 로고
    • A simple and robust statistical test for detecting the presence of recombination
    • Bruen TC, Philippe H, Bryant D, (2006) A simple and robust statistical test for detecting the presence of recombination. Genetics 172: 2665–2681. 16489234
    • (2006) Genetics , vol.172 , pp. 2665-2681
    • Bruen, T.C.1    Philippe, H.2    Bryant, D.3
  • 29
    • 79960893254 scopus 로고    scopus 로고
    • Isolation and phylogenetic characterization of bat astroviruses in southern China
    • Xiao J, Li J, Hu G, Chen Z, Wu Y, et al. (2011) Isolation and phylogenetic characterization of bat astroviruses in southern China. Archives of Virology 156: 1415–1423. doi: 10.1007/s00705-011-1011-2 21573690
    • (2011) Archives of Virology , vol.156 , pp. 1415-1423
    • Xiao, J.1    Li, J.2    Hu, G.3    Chen, Z.4    Wu, Y.5
  • 30
    • 0026499429 scopus 로고
    • Conservation evaluation and phylogenetic diversity
    • Faith DP, (1992) Conservation evaluation and phylogenetic diversity. Biological Conservation 61: 1–10.
    • (1992) Biological Conservation , vol.61 , pp. 1-10
    • Faith, D.P.1
  • 31
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
    • Lozupone C, Knight R, (2005) UniFrac: a New Phylogenetic Method for Comparing Microbial Communities. Applied and Environmental Microbiology 71: 8228–8235. 16332807
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 32
    • 0001034646 scopus 로고
    • Properties of the rarefaction of diversity measurement
    • Simberloff D, (1972) Properties of the rarefaction of diversity measurement. The American Naturalist 106: 414–418.
    • (1972) The American Naturalist , vol.106 , pp. 414-418
    • Simberloff, D.1
  • 33
    • 84871947467 scopus 로고    scopus 로고
    • Naturally acquired picornavirus infections in primates at the Dhaka zoo
    • Oberste MS, Feeroz MM, Maher K, Nix WA, Engel GA, et al. (2013) Naturally acquired picornavirus infections in primates at the Dhaka zoo. J Virol 87: 572–580. doi: 10.1128/JVI.00838-12 23097447
    • (2013) J Virol , vol.87 , pp. 572-580
    • Oberste, M.S.1    Feeroz, M.M.2    Maher, K.3    Nix, W.A.4    Engel, G.A.5
  • 34
    • 84911111455 scopus 로고    scopus 로고
    • Diversity and molecular phylogeny of mitochondrial DNA of rhesus macaques (Macaca mulatta) in Bangladesh
    • Hasan MK, Feeroz MM, Jones-Engel L, Engel GA, Kanthaswamy S, et al. (2014) Diversity and molecular phylogeny of mitochondrial DNA of rhesus macaques (Macaca mulatta) in Bangladesh. Am J Primatol 76: 1094–1104. doi: 10.1002/ajp.22296 24810278
    • (2014) Am J Primatol , vol.76 , pp. 1094-1104
    • Hasan, M.K.1    Feeroz, M.M.2    Jones-Engel, L.3    Engel, G.A.4    Kanthaswamy, S.5
  • 35
    • 80052824121 scopus 로고    scopus 로고
    • MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
    • Ranwez V, Harispe S, Delsuc F, Douzery EJP, (2011) MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons. PLoS ONE 6: e22594. doi: 10.1371/journal.pone.0022594 21949676
    • (2011) PLoS ONE , vol.6 , pp. 22594
    • Ranwez, V.1    Harispe, S.2    Delsuc, F.3    Douzery, E.J.P.4
  • 36
    • 84949038036 scopus 로고    scopus 로고
    • Matsen IV FA (2012) seqmagick.
  • 37
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K, Misawa K, Kuma Ki, Miyata T, (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 30: 3059–3066. 12136088
    • (2002) Nucleic Acids Research , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 38
    • 77950806408 scopus 로고    scopus 로고
    • New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
    • Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, et al. (2010) New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0. Systematic Biology 59: 307–321. doi: 10.1093/sysbio/syq010 20525638
    • (2010) Systematic Biology , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.-F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5
  • 39
    • 65649092976 scopus 로고    scopus 로고
    • Biopython: freely available Python tools for computational molecular biology and bioinformatics
    • Cock PJA, Antao T, Chang JT, Chapman BA, Cox CJ, et al. (2009) Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25: 1422–1423. doi: 10.1093/bioinformatics/btp163 19304878
    • (2009) Bioinformatics , vol.25 , pp. 1422-1423
    • Cock, P.J.A.1    Antao, T.2    Chang, J.T.3    Chapman, B.A.4    Cox, C.J.5
  • 41
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of Phylogenetics and Evolution in R language
    • Paradis E, Claude J, Strimmer K, (2004) APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics 20: 289–290. 14734327
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 42
    • 77954209892 scopus 로고    scopus 로고
    • The Newick utilities: high-throughput phylogenetic tree processing in the Unix shell
    • Junier T, Zdobnov EM, (2010) The Newick utilities: high-throughput phylogenetic tree processing in the Unix shell. Bioinformatics 26: 1669–1670. doi: 10.1093/bioinformatics/btq243 20472542
    • (2010) Bioinformatics , vol.26 , pp. 1669-1670
    • Junier, T.1    Zdobnov, E.M.2


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