-
1
-
-
0035985042
-
SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli
-
COI: 1:CAS:528:DC%2BD38Xls1Shtrg%3D, PID: 12081641
-
Abo T, Ueda K, Sunohara T, Ogawa K, Aiba H (2002) SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli. Genes Cells 7:629–638
-
(2002)
Genes Cells
, vol.7
, pp. 629-638
-
-
Abo, T.1
Ueda, K.2
Sunohara, T.3
Ogawa, K.4
Aiba, H.5
-
2
-
-
84939774982
-
Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling
-
COI: 1:CAS:528:DC%2BC2MXhtV2itrzK
-
Aeschimann F, Xiong J, Arnold A, Dieterich C, Grosshans H (2015) Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling. Methods (San Diego, Calif) 85:75–89. doi:10.1016/j.ymeth.2015.06.013
-
(2015)
Methods (San Diego, Calif)
, vol.85
, pp. 75-89
-
-
Aeschimann, F.1
Xiong, J.2
Arnold, A.3
Dieterich, C.4
Grosshans, H.5
-
3
-
-
33750286042
-
Enantiomeric free radicals and enzymatic control of stereochemistry in a radical mechanism: the case of lysine 2,3-aminomutases
-
COI: 1:CAS:528:DC%2BD28XhtVSrtbnK, PID: 17042480
-
Behshad E, Ruzicka FJ, Mansoorabadi SO, Chen D, Reed GH, Frey PA (2006) Enantiomeric free radicals and enzymatic control of stereochemistry in a radical mechanism: the case of lysine 2,3-aminomutases. Biochemistry 45:12639–12646. doi:10.1021/bi061328t
-
(2006)
Biochemistry
, vol.45
, pp. 12639-12646
-
-
Behshad, E.1
Ruzicka, F.J.2
Mansoorabadi, S.O.3
Chen, D.4
Reed, G.H.5
Frey, P.A.6
-
4
-
-
77953505575
-
Regulatory RNAs and the HptB/RetS signalling pathways fine-tune Pseudomonas aeruginosa pathogenesis
-
COI: 1:CAS:528:DC%2BC3cXosFChur8%3D, PID: 20398205
-
Bordi C et al (2010) Regulatory RNAs and the HptB/RetS signalling pathways fine-tune Pseudomonas aeruginosa pathogenesis. Mol Microbiol 76:1427–1443. doi:10.1111/j.1365-2958.2010.07146.x
-
(2010)
Mol Microbiol
, vol.76
, pp. 1427-1443
-
-
Bordi, C.1
-
5
-
-
67651219385
-
The GacS/GacA signal transduction system of Pseudomonas aeruginosa acts exclusively through its control over the transcription of the RsmY and RsmZ regulatory small RNAs
-
COI: 1:CAS:528:DC%2BD1MXhtVWksbfP, PID: 19602144
-
Brencic A, McFarland KA, McManus HR, Castang S, Mogno I, Dove SL, Lory S (2009) The GacS/GacA signal transduction system of Pseudomonas aeruginosa acts exclusively through its control over the transcription of the RsmY and RsmZ regulatory small RNAs. Mol Microbiol 73:434–445. doi:10.1111/j.1365-2958.2009.06782.x
-
(2009)
Mol Microbiol
, vol.73
, pp. 434-445
-
-
Brencic, A.1
McFarland, K.A.2
McManus, H.R.3
Castang, S.4
Mogno, I.5
Dove, S.L.6
Lory, S.7
-
6
-
-
0242407458
-
Translocon “pulling” of nascent SecM controls the duration of its translational pause and secretion-responsive secA regulation
-
COI: 1:CAS:528:DC%2BD3sXovFKhur4%3D, PID: 14594848
-
Butkus ME, Prundeanu LB, Oliver DB (2003) Translocon “pulling” of nascent SecM controls the duration of its translational pause and secretion-responsive secA regulation. J Bacteriol 185:6719–6722
-
(2003)
J Bacteriol
, vol.185
, pp. 6719-6722
-
-
Butkus, M.E.1
Prundeanu, L.B.2
Oliver, D.B.3
-
7
-
-
0025891023
-
Analysis of an Escherichia coli dnaB temperature-sensitive insertion mutation and its cold-sensitive extragenic suppressor
-
COI: 1:CAS:528:DyaK3MXhtlKqu7Y%3D, PID: 1847383
-
Chang SF, Ng D, Baird L, Georgopoulos C (1991) Analysis of an Escherichia coli dnaB temperature-sensitive insertion mutation and its cold-sensitive extragenic suppressor. J Biol Chem 266:3654–3660
-
(1991)
J Biol Chem
, vol.266
, pp. 3654-3660
-
-
Chang, S.F.1
Ng, D.2
Baird, L.3
Georgopoulos, C.4
-
9
-
-
47249162502
-
Conserved residues Asp16 and Pro24 of TnaC-tRNAPro participate in tryptophan induction of Tna operon expression
-
COI: 1:CAS:528:DC%2BD1cXosFWktrc%3D, PID: 18424524
-
Cruz-Vera LR, Yanofsky C (2008) Conserved residues Asp16 and Pro24 of TnaC-tRNAPro participate in tryptophan induction of Tna operon expression. J Bacteriol 190:4791–4797. doi:10.1128/jb.00290-08
-
(2008)
J Bacteriol
, vol.190
, pp. 4791-4797
-
-
Cruz-Vera, L.R.1
Yanofsky, C.2
-
10
-
-
0019825937
-
Nucleotide sequence of the structural gene for tryptophanase of Escherichia coli K-12
-
COI: 1:CAS:528:DyaL3MXlvVams7s%3D, PID: 6268608
-
Deeley MC, Yanofsky C (1981) Nucleotide sequence of the structural gene for tryptophanase of Escherichia coli K-12. J Bacteriol 147:787–796
-
(1981)
J Bacteriol
, vol.147
, pp. 787-796
-
-
Deeley, M.C.1
Yanofsky, C.2
-
11
-
-
84871921644
-
EF-P is essential for rapid synthesis of proteins containing consecutive proline residues
-
COI: 1:CAS:528:DC%2BC3sXnt1yh, PID: 23239624
-
Doerfel LK, Wohlgemuth I, Kothe C, Peske F, Urlaub H, Rodnina MV (2013) EF-P is essential for rapid synthesis of proteins containing consecutive proline residues. Science 339:85–88. doi:10.1126/science.1229017
-
(2013)
Science
, vol.339
, pp. 85-88
-
-
Doerfel, L.K.1
Wohlgemuth, I.2
Kothe, C.3
Peske, F.4
Urlaub, H.5
Rodnina, M.V.6
-
12
-
-
0028064967
-
SecA promotes preprotein translocation by undergoing ATP-driven cycles of membrane insertion and deinsertion
-
COI: 1:CAS:528:DyaK2MXptF2itw%3D%3D, PID: 8087850
-
Economou A, Wickner W (1994) SecA promotes preprotein translocation by undergoing ATP-driven cycles of membrane insertion and deinsertion. Cell 78:835–843
-
(1994)
Cell
, vol.78
, pp. 835-843
-
-
Economou, A.1
Wickner, W.2
-
13
-
-
0020326467
-
Location of the gene for the low-affinity tryptophan-specific permease of Escherichia coli
-
COI: 1:CAS:528:DyaL38XkvVKiurc%3D, PID: 7052072
-
Edwards RM, Yudkin MD (1982) Location of the gene for the low-affinity tryptophan-specific permease of Escherichia coli. Biochem J 204:617–619
-
(1982)
Biochem J
, vol.204
, pp. 617-619
-
-
Edwards, R.M.1
Yudkin, M.D.2
-
14
-
-
84907840352
-
EF-P dependent pauses integrate proximal and distal signals during translation
-
PID: 25144653
-
Elgamal S, Katz A, Hersch SJ, Newsom D, White P, Navarre WW, Ibba M (2014) EF-P dependent pauses integrate proximal and distal signals during translation. PLoS Genet 10:e1004553. doi:10.1371/journal.pgen.1004553
-
(2014)
PLoS Genet
, vol.10
, pp. e1004553
-
-
Elgamal, S.1
Katz, A.2
Hersch, S.J.3
Newsom, D.4
White, P.5
Navarre, W.W.6
Ibba, M.7
-
15
-
-
0345259585
-
Posttranscriptional modification of mRNA conformation: mechanism that regulates erythromycin-induced resistance
-
COI: 1:CAS:528:DyaL3MXhs12lsbw%3D, PID: 6938954
-
Horinouchi S, Weisblum B (1980) Posttranscriptional modification of mRNA conformation: mechanism that regulates erythromycin-induced resistance. Proc Natl Acad Sci U S A 77:7079–7083
-
(1980)
Proc Natl Acad Sci U S A
, vol.77
, pp. 7079-7083
-
-
Horinouchi, S.1
Weisblum, B.2
-
16
-
-
0029008560
-
Lethal double-stranded RNA processing activity of ribonuclease III in the absence of suhB protein of Escherichia coli
-
COI: 1:CAS:528:DyaK2MXmsFKkur4%3D, PID: 8589060
-
Inada T, Nakamura Y (1995) Lethal double-stranded RNA processing activity of ribonuclease III in the absence of suhB protein of Escherichia coli. Biochimie 77:294–302
-
(1995)
Biochimie
, vol.77
, pp. 294-302
-
-
Inada, T.1
Nakamura, Y.2
-
17
-
-
84855896806
-
The tmRNA ribosome-rescue system
-
COI: 1:CAS:528:DC%2BC38Xht1Gmt7zN, PID: 22243584
-
Janssen BD, Hayes CS (2012) The tmRNA ribosome-rescue system. Adv Protein Chem Struct Biol 86:151–191. doi:10.1016/b978-0-12-386497-0.00005-0
-
(2012)
Adv Protein Chem Struct Biol
, vol.86
, pp. 151-191
-
-
Janssen, B.D.1
Hayes, C.S.2
-
18
-
-
22544461608
-
Induction of the MexXY efflux pump in Pseudomonas aeruginosa is dependent on drug-ribosome interaction
-
COI: 1:CAS:528:DC%2BD2MXmslCrsb0%3D, PID: 16030228
-
Jeannot K, Sobel ML, El Garch F, Poole K, Plesiat P (2005) Induction of the MexXY efflux pump in Pseudomonas aeruginosa is dependent on drug-ribosome interaction. J Bacteriol 187:5341–5346. doi:10.1128/jb.187.15.5341-5346.2005
-
(2005)
J Bacteriol
, vol.187
, pp. 5341-5346
-
-
Jeannot, K.1
Sobel, M.L.2
El Garch, F.3
Poole, K.4
Plesiat, P.5
-
19
-
-
0345465673
-
SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA)
-
COI: 1:CAS:528:DyaK1MXksFKlt7Y%3D, PID: 10393194
-
Karzai AW, Susskind MM, Sauer RT (1999) SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA). EMBO J 18:3793–3799. doi:10.1093/emboj/18.13.3793
-
(1999)
EMBO J
, vol.18
, pp. 3793-3799
-
-
Karzai, A.W.1
Susskind, M.M.2
Sauer, R.T.3
-
20
-
-
0030024281
-
Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
-
COI: 1:CAS:528:DyaK28XhtFCru7o%3D, PID: 8584937
-
Keiler KC, Waller PR, Sauer RT (1996) Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science 271:990–993
-
(1996)
Science
, vol.271
, pp. 990-993
-
-
Keiler, K.C.1
Waller, P.R.2
Sauer, R.T.3
-
21
-
-
0031056726
-
Regulation of the Escherichia coli tna operon: nascent leader peptide control at the tnaC stop codon
-
COI: 1:CAS:528:DyaK2sXhsFGrtrY%3D, PID: 9045840
-
Konan KV, Yanofsky C (1997) Regulation of the Escherichia coli tna operon: nascent leader peptide control at the tnaC stop codon. J Bacteriol 179:1774–1779
-
(1997)
J Bacteriol
, vol.179
, pp. 1774-1779
-
-
Konan, K.V.1
Yanofsky, C.2
-
22
-
-
84891617947
-
SuhB is a regulator of multiple virulence genes and essential for pathogenesis of Pseudomonas aeruginosa
-
Li K et al (2013) SuhB is a regulator of multiple virulence genes and essential for pathogenesis of Pseudomonas aeruginosa. mBio. doi:10.1128/mBio.00419-13
-
(2013)
mBio
-
-
Li, K.1
-
23
-
-
84893244181
-
Interactions of the TnaC nascent peptide with rRNA in the exit tunnel enable the ribosome to respond to free tryptophan
-
COI: 1:CAS:528:DC%2BC2cXhtlShsb0%3D, PID: 24137004
-
Martinez AK et al (2014) Interactions of the TnaC nascent peptide with rRNA in the exit tunnel enable the ribosome to respond to free tryptophan. Nucleic Acids Res 42:1245–1256. doi:10.1093/nar/gkt923
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 1245-1256
-
-
Martinez, A.K.1
-
24
-
-
34247103448
-
The tmRNA system for translational surveillance and ribosome rescue
-
COI: 1:CAS:528:DC%2BD2sXhtVehtb7P, PID: 17291191
-
Moore SD, Sauer RT (2007) The tmRNA system for translational surveillance and ribosome rescue. Annu Rev Biochem 76:101–124. doi:10.1146/annurev.biochem.75.103004.142733
-
(2007)
Annu Rev Biochem
, vol.76
, pp. 101-124
-
-
Moore, S.D.1
Sauer, R.T.2
-
25
-
-
33644746633
-
Antibiotic inducibility of the MexXY multidrug efflux system of Pseudomonas aeruginosa: involvement of the antibiotic-inducible PA5471 gene product
-
COI: 1:CAS:528:DC%2BD28XisVWhs7c%3D, PID: 16484195
-
Morita Y, Sobel ML, Poole K (2006) Antibiotic inducibility of the MexXY multidrug efflux system of Pseudomonas aeruginosa: involvement of the antibiotic-inducible PA5471 gene product. J Bacteriol 188:1847–1855. doi:10.1128/jb.188.5.1847-1855.2006
-
(2006)
J Bacteriol
, vol.188
, pp. 1847-1855
-
-
Morita, Y.1
Sobel, M.L.2
Poole, K.3
-
26
-
-
67749090887
-
Translational control of the antibiotic inducibility of the PA5471 gene required for mexXY multidrug efflux gene expression in Pseudomonas aeruginosa
-
COI: 1:CAS:528:DC%2BD1MXptlehsL4%3D, PID: 19465646
-
Morita Y, Gilmour C, Metcalf D, Poole K (2009) Translational control of the antibiotic inducibility of the PA5471 gene required for mexXY multidrug efflux gene expression in Pseudomonas aeruginosa. J Bacteriol 191:4966–4975. doi:10.1128/jb.00073-09
-
(2009)
J Bacteriol
, vol.191
, pp. 4966-4975
-
-
Morita, Y.1
Gilmour, C.2
Metcalf, D.3
Poole, K.4
-
27
-
-
0035105116
-
Secretion monitor, SecM, undergoes self-translation arrest in the cytosol
-
COI: 1:CAS:528:DC%2BD3MXis1Kitr4%3D, PID: 11172723
-
Nakatogawa H, Ito K (2001) Secretion monitor, SecM, undergoes self-translation arrest in the cytosol. Mol Cell 7:185–192
-
(2001)
Mol Cell
, vol.7
, pp. 185-192
-
-
Nakatogawa, H.1
Ito, K.2
-
28
-
-
0037040411
-
The ribosomal exit tunnel functions as a discriminating gate
-
COI: 1:CAS:528:DC%2BD38XisFOhtL4%3D, PID: 11893334
-
Nakatogawa H, Ito K (2002) The ribosomal exit tunnel functions as a discriminating gate. Cell 108:629–636
-
(2002)
Cell
, vol.108
, pp. 629-636
-
-
Nakatogawa, H.1
Ito, K.2
-
29
-
-
77955474903
-
PoxA, yjeK, and elongation factor P coordinately modulate virulence and drug resistance in Salmonella enterica
-
COI: 1:CAS:528:DC%2BC3cXpsVCnsb8%3D, PID: 20670890
-
Navarre WW et al (2010) PoxA, yjeK, and elongation factor P coordinately modulate virulence and drug resistance in Salmonella enterica. Mol Cell 39:209–221. doi:10.1016/j.molcel.2010.06.021
-
(2010)
Mol Cell
, vol.39
, pp. 209-221
-
-
Navarre, W.W.1
-
30
-
-
83255164895
-
Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo
-
COI: 1:CAS:528:DC%2BC3MXhs1SgtrzE, PID: 22153074
-
Oh E et al (2011) Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo. Cell 147:1295–1308. doi:10.1016/j.cell.2011.10.044
-
(2011)
Cell
, vol.147
, pp. 1295-1308
-
-
Oh, E.1
-
31
-
-
84864283412
-
Lys34 of translation elongation factor EF-P is hydroxylated by YfcM
-
COI: 1:CAS:528:DC%2BC38Xos12jt7c%3D, PID: 22706199
-
Peil L, Starosta AL, Virumae K, Atkinson GC, Tenson T, Remme J, Wilson DN (2012) Lys34 of translation elongation factor EF-P is hydroxylated by YfcM. Nat Chem Biol 8:695–697. doi:10.1038/nchembio.1001
-
(2012)
Nat Chem Biol
, vol.8
, pp. 695-697
-
-
Peil, L.1
Starosta, A.L.2
Virumae, K.3
Atkinson, G.C.4
Tenson, T.5
Remme, J.6
Wilson, D.N.7
-
32
-
-
84884335094
-
Distinct XPPX sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor EF-P
-
COI: 1:CAS:528:DC%2BC3sXhsFOhsbbE, PID: 24003132
-
Peil L et al (2013) Distinct XPPX sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor EF-P. Proc Natl Acad Sci USA 110:15265–15270. doi:10.1073/pnas.1310642110
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 15265-15270
-
-
Peil, L.1
-
34
-
-
84943454908
-
SuhB is a novel ribosome associated protein that regulates expression of MexXY by modulating ribosome stalling in Pseudomonas aeruginosa
-
Shi J et al (2015) SuhB is a novel ribosome associated protein that regulates expression of MexXY by modulating ribosome stalling in Pseudomonas aeruginosa. Mol Microbiol. doi:10.1111/mmi.13126
-
(2015)
Mol Microbiol
-
-
Shi, J.1
-
35
-
-
0021720662
-
Mutation that suppresses the protein export defect of the secY mutation and causes cold-sensitive growth of Escherichia coli
-
COI: 1:CAS:528:DyaL2MXkt1Ojtg%3D%3D, PID: 6389495
-
Shiba K, Ito K, Yura T (1984) Mutation that suppresses the protein export defect of the secY mutation and causes cold-sensitive growth of Escherichia coli. J Bacteriol 160:696–701
-
(1984)
J Bacteriol
, vol.160
, pp. 696-701
-
-
Shiba, K.1
Ito, K.2
Yura, T.3
-
36
-
-
84924286909
-
The bacterial translation stress response
-
COI: 1:CAS:528:DC%2BC2cXhvVyisbzI, PID: 25135187
-
Starosta AL, Lassak J, Jung K, Wilson DN (2014a) The bacterial translation stress response. FEMS Microbiol Rev 38:1172–1201. doi:10.1111/1574-6976.12083
-
(2014)
FEMS Microbiol Rev
, vol.38
, pp. 1172-1201
-
-
Starosta, A.L.1
Lassak, J.2
Jung, K.3
Wilson, D.N.4
-
37
-
-
84909618363
-
Translational stalling at polyproline stretches is modulated by the sequence context upstream of the stall site
-
PID: 25143529
-
Starosta AL et al (2014b) Translational stalling at polyproline stretches is modulated by the sequence context upstream of the stall site. Nucleic Acids Res 42:10711–10719. doi:10.1093/nar/gku768
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 10711-10719
-
-
Starosta, A.L.1
-
38
-
-
84871918588
-
Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches
-
COI: 1:CAS:528:DC%2BC3sXnt1yj, PID: 23239623
-
Ude S, Lassak J, Starosta AL, Kraxenberger T, Wilson DN, Jung K (2013) Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches. Science 339:82–85. doi:10.1126/science.1228985
-
(2013)
Science
, vol.339
, pp. 82-85
-
-
Ude, S.1
Lassak, J.2
Starosta, A.L.3
Kraxenberger, T.4
Wilson, D.N.5
Jung, K.6
-
39
-
-
34848919255
-
The structure of the R184A mutant of the inositol monophosphatase encoded by suhB and implications for its functional interactions in Escherichia coli
-
COI: 1:CAS:528:DC%2BD2sXhtVWjsLjE, PID: 17652087
-
Wang Y, Stieglitz KA, Bubunenko M, Court DL, Stec B, Roberts MF (2007) The structure of the R184A mutant of the inositol monophosphatase encoded by suhB and implications for its functional interactions in Escherichia coli. J Biol Chem 282:26989–26996. doi:10.1074/jbc.M701210200
-
(2007)
J Biol Chem
, vol.282
, pp. 26989-26996
-
-
Wang, Y.1
Stieglitz, K.A.2
Bubunenko, M.3
Court, D.L.4
Stec, B.5
Roberts, M.F.6
-
40
-
-
0028963496
-
Erythromycin resistance by ribosome modification
-
COI: 1:CAS:528:DyaK2MXktFWlt78%3D, PID: 7793855
-
Weisblum B (1995a) Erythromycin resistance by ribosome modification. Antimicrob Agents Chemother 39:577–585. doi:10.1128/aac.39.3.577
-
(1995)
Antimicrob Agents Chemother
, vol.39
, pp. 577-585
-
-
Weisblum, B.1
-
41
-
-
0028914553
-
Insights into erythromycin action from studies of its activity as inducer of resistance
-
COI: 1:CAS:528:DyaK2MXkvVKnur4%3D, PID: 7785974
-
Weisblum B (1995b) Insights into erythromycin action from studies of its activity as inducer of resistance. Antimicrob Agents Chemother 39:797–805
-
(1995)
Antimicrob Agents Chemother
, vol.39
, pp. 797-805
-
-
Weisblum, B.1
-
42
-
-
84874611913
-
Nascent peptides that block protein synthesis in bacteria
-
COI: 1:CAS:528:DC%2BC3sXltVCnurw%3D, PID: 23431150
-
Woolstenhulme CJ et al (2013) Nascent peptides that block protein synthesis in bacteria. Proc Natl Acad Sci USA 110:E878–E887. doi:10.1073/pnas.1219536110
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. E878-E887
-
-
Woolstenhulme, C.J.1
-
43
-
-
0025320802
-
A mutation that enhances synthesis of sigma 32 and suppresses temperature-sensitive growth of the rpoH15 mutant of Escherichia coli
-
COI: 1:CAS:528:DyaK3cXkslWqu74%3D, PID: 2138605
-
Yano R, Nagai H, Shiba K, Yura T (1990) A mutation that enhances synthesis of sigma 32 and suppresses temperature-sensitive growth of the rpoH15 mutant of Escherichia coli. J Bacteriol 172:2124–2130
-
(1990)
J Bacteriol
, vol.172
, pp. 2124-2130
-
-
Yano, R.1
Nagai, H.2
Shiba, K.3
Yura, T.4
|