-
1
-
-
58549114677
-
Slow peptide bond formation by proline and other N-alkylamino acids in translation
-
Pavlov,M.Y., Watts,R.E., Tan,Z., Cornish,V.W., Ehrenberg,M. and Forster,A.C. (2009) Slow peptide bond formation by proline and other N-alkylamino acids in translation. Proc. Natl Acad. Sci. U.S.A., 106, 50-54.
-
(2009)
Proc. Natl Acad. Sci. U.S.A.
, vol.106
, pp. 50-54
-
-
Pavlov, M.Y.1
Watts, R.E.2
Tan, Z.3
Cornish, V.W.4
Ehrenberg, M.5
Forster, A.C.6
-
2
-
-
78651083730
-
PH-sensitivity of the ribosomal peptidyl transfer reaction dependent on the identity of the A-site aminoacyl-tRNA
-
Johansson,M., Ieong,K.W., Trobro,S., Strazewski,P., Aqvist,J., Pavlov,M.Y. and Ehrenberg,M. (2011) pH-sensitivity of the ribosomal peptidyl transfer reaction dependent on the identity of the A-site aminoacyl-tRNA. Proc. Natl Acad. Sci. U.S.A., 108, 79-84.
-
(2011)
Proc. Natl Acad. Sci. U.S.A.
, vol.108
, pp. 79-84
-
-
Johansson, M.1
Ieong, K.W.2
Trobro, S.3
Strazewski, P.4
Aqvist, J.5
Pavlov, M.Y.6
Ehrenberg, M.7
-
3
-
-
84871921644
-
EF-P is essential for rapid synthesis of proteins containing consecutive proline residues
-
Doerfel,L.K., Wohlgemuth,I., Kothe,C., Peske,F., Urlaub,H. and Rodnina,M.V. (2013) EF-P is essential for rapid synthesis of proteins containing consecutive proline residues. Science, 339, 85-88.
-
(2013)
Science
, vol.339
, pp. 85-88
-
-
Doerfel, L.K.1
Wohlgemuth, I.2
Kothe, C.3
Peske, F.4
Urlaub, H.5
Rodnina, M.V.6
-
4
-
-
37549003962
-
Peptidyl-prolyl-tRNA at the ribosomal P-site reacts poorly with puromycin
-
Muto,H. and Ito,K. (2008) Peptidyl-prolyl-tRNA at the ribosomal P-site reacts poorly with puromycin. Biochem. Biophys. Res. Commun., 366, 1043-1047.
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.366
, pp. 1043-1047
-
-
Muto, H.1
Ito, K.2
-
5
-
-
57749116022
-
Modulation of the rate of peptidyl transfer on the ribosome by the nature of substrates
-
Wohlgemuth,I., Brenner,S., Beringer,M. and Rodnina,M.V. (2008) Modulation of the rate of peptidyl transfer on the ribosome by the nature of substrates. J. Biol. Chem., 283, 32229-32235.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 32229-32235
-
-
Wohlgemuth, I.1
Brenner, S.2
Beringer, M.3
Rodnina, M.V.4
-
6
-
-
84871918588
-
Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches
-
Ude,S., Lassak,J., Starosta,A.L., Kraxenberger,T.,Wilson,D.N. and Jung,K. (2013) Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches. Science, 339, 82-85.
-
(2013)
Science
, vol.339
, pp. 82-85
-
-
Ude, S.1
Lassak, J.2
Starosta, A.L.3
Kraxenberger, T.4
Wilson, D.N.5
Jung, K.6
-
7
-
-
84874611913
-
Nascent peptides that block protein synthesis in bacteria
-
Woolstenhulme,C.J., Parajuli,S., Healey,D.W., Valverde,D.P., Petersen,E.N., Starosta,A.L., Guydosh,N.R., Johnson,W.E., Wilson,D.N. and Buskirk,A.R. (2013) Nascent peptides that block protein synthesis in bacteria. Proc. Natl Acad. Sci. U.S.A., 110, E878-887.
-
(2013)
Proc. Natl Acad. Sci. U.S.A.
, vol.110
, pp. E878-887
-
-
Woolstenhulme, C.J.1
Parajuli, S.2
Healey, D.W.3
Valverde, D.P.4
Petersen, E.N.5
Starosta, A.L.6
Guydosh, N.R.7
Johnson, W.E.8
Wilson, D.N.9
Buskirk, A.R.10
-
8
-
-
84884335094
-
Distinct XPPX sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor EF-P
-
Peil,L., Starosta,A.L., Lassak,J., Atkinson,G.C., Virumae,K., Spitzer,M., Tenson,T., Jung,K., Remme,J. and Wilson,D.N. (2013) Distinct XPPX sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor EF-P. Proc. Natl Acad. Sci. U.S.A., 110, 15265-15270.
-
(2013)
Proc. Natl Acad. Sci. U.S.A.
, vol.110
, pp. 15265-15270
-
-
Peil, L.1
Starosta, A.L.2
Lassak, J.3
Atkinson, G.C.4
Virumae, K.5
Spitzer, M.6
Tenson, T.7
Jung, K.8
Remme, J.9
Wilson, D.N.10
-
9
-
-
84891707361
-
EIF5A promotes translation of polyproline motifs
-
Gutierrez,E., Shin,B., Woolstenhulme,C., Kim,J., Saini,P., Buskirk,A. and Dever,T. (2013) eIF5A promotes translation of polyproline motifs. Mol. Cell, 51, 1-11.
-
(2013)
Mol. Cell
, vol.51
, pp. 1-11
-
-
Gutierrez, E.1
Shin, B.2
Woolstenhulme, C.3
Kim, J.4
Saini, P.5
Buskirk, A.6
Dever, T.7
-
10
-
-
77955474903
-
PoxA, yjeK, and elongation factor P coordinately modulate virulence and drug resistance in Salmonella enterica
-
Navarre,W.W., Zou,S.B., Roy,H., Xie,J.L., Savchenko,A., Singer,A., Edvokimova,E., Prost,L.R., Kumar,R., Ibba,M. et al. (2010) PoxA, yjeK, and elongation factor P coordinately modulate virulence and drug resistance in Salmonella enterica. Mol. Cell, 39, 209-221.
-
(2010)
Mol. Cell
, vol.39
, pp. 209-221
-
-
Navarre, W.W.1
Zou, S.B.2
Roy, H.3
Xie, J.L.4
Savchenko, A.5
Singer, A.6
Edvokimova, E.7
Prost, L.R.8
Kumar, R.9
Ibba, M.10
-
11
-
-
77956339569
-
A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P
-
Yanagisawa,T., Sumida,T., Ishii,R., Takemoto,C. and Yokoyama,S. (2010) A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P. Nat. Struct. Mol. Biol., 17, 1136-1143.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1136-1143
-
-
Yanagisawa, T.1
Sumida, T.2
Ishii, R.3
Takemoto, C.4
Yokoyama, S.5
-
12
-
-
84864283412
-
Lys34 of translation elongation factor EF-P is hydroxylated by YfcM
-
Peil,L., Starosta,A.L., Virumae,K., Atkinson,G.C., Tenson,T., Remme,J. and Wilson,D.N. (2012) Lys34 of translation elongation factor EF-P is hydroxylated by YfcM. Nat. Chem. Biol., 8, 695-697.
-
(2012)
Nat. Chem. Biol.
, vol.8
, pp. 695-697
-
-
Peil, L.1
Starosta, A.L.2
Virumae, K.3
Atkinson, G.C.4
Tenson, T.5
Remme, J.6
Wilson, D.N.7
-
13
-
-
84907809169
-
The hypusine-containing translation factor eIF5A
-
Dever,T.E., Gutierrez,E. and Shin,B.S. (2014) The hypusine-containing translation factor eIF5A. Crit. Rev. Biochem. Mol. Biol., 17, 1-13.
-
(2014)
Crit. Rev. Biochem. Mol. Biol.
, vol.17
, pp. 1-13
-
-
Dever, T.E.1
Gutierrez, E.2
Shin, B.S.3
-
14
-
-
77953039922
-
Functional significance of eIF5A and its hypusine modification in eukaryotes
-
Park,M.H., Nishimura,K., Zanelli,C.F. and Valentini,S.R. (2010) Functional significance of eIF5A and its hypusine modification in eukaryotes. Amino Acids, 38, 491-500.
-
(2010)
Amino Acids
, vol.38
, pp. 491-500
-
-
Park, M.H.1
Nishimura, K.2
Zanelli, C.F.3
Valentini, S.R.4
-
15
-
-
0014184339
-
Revised linkage map of Escherichia coli
-
Taylor,A.L. and Trotter,C.D. (1967) Revised linkage map of Escherichia coli. Bacteriol. Rev., 31, 332-353.
-
(1967)
Bacteriol. Rev.
, vol.31
, pp. 332-353
-
-
Taylor, A.L.1
Trotter, C.D.2
-
16
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
-
2006.0008
-
Baba,T., Ara,T., Hasegawa,M., Takai,Y., Okumura,Y., Baba,M., Datsenko,K.A., Tomita,M., Wanner,B.L. and Mori,H. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol., 2, 2006.0008.
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
17
-
-
73849087355
-
Update on the Keio collection of Escherichia coli single-gene deletion mutants
-
Yamamoto,N., Nakahigashi,K., Nakamichi,T., Yoshino,M., Takai,Y., Touda,Y., Furubayashi,A., Kinjyo,S., Dose,H., Hasegawa,M. et al. (2009) Update on the Keio collection of Escherichia coli single-gene deletion mutants. Mol. Syst. Biol., 5, 335.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 335
-
-
Yamamoto, N.1
Nakahigashi, K.2
Nakamichi, T.3
Yoshino, M.4
Takai, Y.5
Touda, Y.6
Furubayashi, A.7
Kinjyo, S.8
Dose, H.9
Hasegawa, M.10
-
18
-
-
67349266694
-
Universal sample preparation method for proteome analysis
-
Wisniewski,J.R., Zougman,A., Nagaraj,N. and Mann,M. (2009) Universal sample preparation method for proteome analysis. Nat. Methods, 6, 359-362.
-
(2009)
Nat. Methods
, vol.6
, pp. 359-362
-
-
Wisniewski, J.R.1
Zougman, A.2
Nagaraj, N.3
Mann, M.4
-
19
-
-
71549117585
-
Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome
-
Wisniewski,J.R., Zougman,A. and Mann,M. (2009) Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome. J. Proteome Res., 8, 5674-5678.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 5674-5678
-
-
Wisniewski, J.R.1
Zougman, A.2
Mann, M.3
-
20
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox,J. and Mann,M. (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol., 26, 1367-1372.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
21
-
-
84893244181
-
Interactions of the TnaC nascent peptide with rRNA in the exit tunnel enable the ribosome to respond to free tryptophan
-
Martinez,A.K., Gordon,E., Sengupta,A., Shirole,N., Klepacki,D., Martinez-Garriga,B., Brown,L.M., Benedik,M.J., Yanofsky,C., Mankin,A.S. et al. (2014) Interactions of the TnaC nascent peptide with rRNA in the exit tunnel enable the ribosome to respond to free tryptophan. Nucleic Acids Res., 42, 1245-1256.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 1245-1256
-
-
Martinez, A.K.1
Gordon, E.2
Sengupta, A.3
Shirole, N.4
Lepacki, D.5
Martinez-Garriga, B.6
Brown, L.M.7
Benedik, M.J.8
Yanofsky, C.9
Mankin, A.S.10
-
22
-
-
0024252185
-
Extension inhibition analysis of translation initiation complexes
-
Hartz,D., McPheeters,D.S., Traut,R. and Gold,L. (1988) Extension inhibition analysis of translation initiation complexes. Methods Enzymol., 164, 419-425.
-
(1988)
Methods Enzymol.
, vol.164
, pp. 419-425
-
-
Hartz, D.1
McPheeters, D.S.2
Traut, R.3
Gold, L.4
-
23
-
-
0033584887
-
Cis peptide bonds in proteins: Residues involved, their conformations, interactions and locations
-
Pal,D. and Chakrabarti,P. (1999) Cis peptide bonds in proteins: residues involved, their conformations, interactions and locations. J. Mol. Biol., 294, 271-288.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 271-288
-
-
Pal, D.1
Chakrabarti, P.2
-
24
-
-
84876259384
-
Aromatic-proline interactions: Electronically tunable CH/pi interactions
-
Zondlo,N.J. (2013) Aromatic-proline interactions: electronically tunable CH/pi interactions. Acc. Chem. Res., 46, 1039-1049.
-
(2013)
Acc. Chem. Res.
, vol.46
, pp. 1039-1049
-
-
Zondlo, N.J.1
-
25
-
-
0017189603
-
The X-Pro peptide bond as an nmr probe for conformational studies of flexible linear peptides
-
Grathwohl,C. and Wuthrich,K. (1976) The X-Pro peptide bond as an nmr probe for conformational studies of flexible linear peptides. Biopolymers, 15, 2025-2041.
-
(1976)
Biopolymers
, vol.15
, pp. 2025-2041
-
-
Grathwohl, C.1
Wuthrich, K.2
-
26
-
-
0032486107
-
Side-chain effects on peptidyl-prolyl cis/trans isomerisation
-
Reimer,U., Scherer,G., Drewello,M., Kruber,S., Schutkowski,M. and Fischer,G. (1998) Side-chain effects on peptidyl-prolyl cis/trans isomerisation. J. Mol. Biol., 279, 449-460.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 449-460
-
-
Reimer, U.1
Scherer, G.2
Drewello, M.3
Kruber, S.4
Schutkowski, M.5
Fischer, G.6
-
27
-
-
0032522713
-
Local control of peptide conformation: Stabilization of cis proline peptide bonds by aromatic proline interactions
-
Wu,W.J. and Raleigh,D.P. (1998) Local control of peptide conformation: stabilization of cis proline peptide bonds by aromatic proline interactions. Biopolymers, 45, 381-394.
-
(1998)
Biopolymers
, vol.45
, pp. 381-394
-
-
Wu, W.J.1
Raleigh, D.P.2
-
28
-
-
84878912996
-
Arrest peptides: Cis-acting modulators of translation
-
Ito,K. and Chiba,S. (2013) Arrest peptides: cis-acting modulators of translation. Annu. Rev. Biochem., 82, 171-202.
-
(2013)
Annu. Rev. Biochem.
, vol.82
, pp. 171-202
-
-
Ito, K.1
Chiba, S.2
-
29
-
-
0037040411
-
The ribosomal exit tunnel functions as a discriminating gate
-
Nakatogawa,H. and Ito,K. (2002) The ribosomal exit tunnel functions as a discriminating gate. Cell, 108, 629-636.
-
(2002)
Cell
, vol.108
, pp. 629-636
-
-
Nakatogawa, H.1
Ito, K.2
-
30
-
-
0029982204
-
Ribosome regulation by the nascent peptide
-
Lovett,P.S. and Rogers,E.J. (1996) Ribosome regulation by the nascent peptide. Microbiol. Rev., 60, 366-385.
-
(1996)
Microbiol. Rev.
, vol.60
, pp. 366-385
-
-
Lovett, P.S.1
Rogers, E.J.2
-
31
-
-
60349100340
-
Programmed drug-dependent ribosome stalling
-
Ramu,H., Mankin,A. and Vazquez-Laslop,N. (2009) Programmed drug-dependent ribosome stalling. Mol. Microbiol., 71, 811-824.
-
(2009)
Mol. Microbiol.
, vol.71
, pp. 811-824
-
-
Ramu, H.1
Mankin, A.2
Vazquez-Laslop, N.3
-
32
-
-
84855596022
-
-
Rodnina,M.V.,Wintermeyer,W. and Green,R. (eds.), Springer-Verlag,Wien, NY
-
Vázquez-Laslop,N., Ramu,H. and Mankin,A.S. (2011) In Rodnina,M.V.,Wintermeyer,W. and Green,R. (eds.), Ribosomes. Structure, Function, Evolution. Springer-Verlag,Wien, NY, pp. 377-392.
-
(2011)
Ribosomes. Structure, Function, Evolution
, pp. 377-392
-
-
Vázquez-Laslop, N.1
Ramu, H.2
Mankin, A.S.3
-
33
-
-
64749115067
-
The plasticity of a translation arrest motif yields insights into nascent polypeptide recognition inside the ribosome tunnel
-
Yap,M.N. and Bernstein,H.D. (2009) The plasticity of a translation arrest motif yields insights into nascent polypeptide recognition inside the ribosome tunnel. Mol. Cell, 34, 201-211.
-
(2009)
Mol. Cell
, vol.34
, pp. 201-211
-
-
Yap, M.N.1
Bernstein, H.D.2
-
34
-
-
43049089746
-
Molecular mechanism of drug-dependent ribosome stalling
-
Vazquez-Laslop,N., Thum,C. and Mankin,A.S. (2008) Molecular mechanism of drug-dependent ribosome stalling. Mol. Cell, 30, 190-202.
-
(2008)
Mol. Cell
, vol.30
, pp. 190-202
-
-
Vazquez-Laslop, N.1
Thum, C.2
Mankin, A.S.3
-
35
-
-
79251557798
-
Nascent peptide in the ribosome exit tunnel affects functional properties of the A-site of the peptidyl transferase center
-
Ramu,H., Vazquez-Laslop,N., Klepacki,D., Dai,Q., Piccirilli,J., Micura,R. and Mankin,A.S. (2011) Nascent peptide in the ribosome exit tunnel affects functional properties of the A-site of the peptidyl transferase center. Mol. Cell, 41, 321-330.
-
(2011)
Mol. Cell
, vol.41
, pp. 321-330
-
-
Ramu, H.1
Vazquez-Laslop, N.2
Klepacki, D.3
Dai, Q.4
Piccirilli, J.5
Micura, R.6
Mankin, A.S.7
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