-
1
-
-
84884978170
-
Interspecies transmission and emergence of novel viruses: Lessons from bats and birds
-
Chan, J. F. W., To, K. K. W., Tse, H., Jin, D. Y. & Yuen, K. Y. Interspecies transmission and emergence of novel viruses: lessons from bats and birds. Trends Microbiol. 21, 544-555 (2013).
-
(2013)
Trends Microbiol.
, vol.21
, pp. 544-555
-
-
Chan, J.F.W.1
To, K.K.W.2
Tse, H.3
Jin, D.Y.4
Yuen, K.Y.5
-
2
-
-
84948396574
-
-
(Academic Press, San Diego, CA.)
-
King, A. M. Q., Adams, M. J., Carstens, E. B. & Lefkowitz, E. J. Virus taxonomy, the Ninth Report of the International Committee on Taxonomy of Viruses 810-814 (Academic Press, San Diego, CA., 2012).
-
(2012)
Virus Taxonomy, the Ninth Report of the International Committee on Taxonomy of Viruses
, pp. 810-814
-
-
King, A.M.Q.1
Adams, M.J.2
Carstens, E.B.3
Lefkowitz, E.J.4
-
3
-
-
84880593983
-
Genetic characterization of betacoronavirus lineage C viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus HKU5 in Japanese pipistrelle: Implications for the origin of the novel middle east respiratory syndrome coronavirus
-
Lau, S. K. P. et al. Genetic characterization of betacoronavirus lineage C viruses in bats reveals marked sequence divergence in the spike protein of Pipistrellus bat coronavirus HKU5 in Japanese Pipistrelle: Implications for the origin of the novel Middle East Respiratory Syndrome Coronavirus. J. Virol. 87, 8638-8650 (2013).
-
(2013)
J. Virol.
, vol.87
, pp. 8638-8650
-
-
Lau, S.K.P.1
-
4
-
-
84888011629
-
A decade after SARS: Strategies for controlling emerging coronaviruses
-
Graham, R. L., Donaldson, E. F. & Baric, R. S. A decade after SARS: strategies for controlling emerging coronaviruses. Nat. Rev. Microbiol. 11, 836-848 (2013).
-
(2013)
Nat. Rev. Microbiol.
, vol.11
, pp. 836-848
-
-
Graham, R.L.1
Donaldson, E.F.2
Baric, R.S.3
-
5
-
-
79952156407
-
Coronavirus genomics and bioinformatics analysis
-
Woo, P. C. Y., Huang, Y., Lau, S. K. P. & Yuen, K. Y. Coronavirus genomics and bioinformatics analysis. Viruses-Basel. 2, 1804-1820 (2010).
-
(2010)
Viruses-Basel.
, vol.2
, pp. 1804-1820
-
-
Woo, P.C.Y.1
Huang, Y.2
Lau, S.K.P.3
Yuen, K.Y.4
-
6
-
-
24944498409
-
Structure of SARS coronavirus spike receptor-binding domain complexed with receptor
-
Li, F., Li, W., Farzan, M. & Harrison, S. C. Structure of SARS coronavirus spike receptor-binding domain complexed with receptor. Science 309, 1864-1868 (2005).
-
(2005)
Science
, vol.309
, pp. 1864-1868
-
-
Li, F.1
Li, W.2
Farzan, M.3
Harrison, S.C.4
-
7
-
-
84883712861
-
Receptor recognition and cross-species infections of SARS coronavirus
-
Li, F. Receptor recognition and cross-species infections of SARS coronavirus. Antivir. Res. 100, 246-254 (2013).
-
(2013)
Antivir. Res.
, vol.100
, pp. 246-254
-
-
Li, F.1
-
8
-
-
67349158649
-
Coronaviruses post-SARS: Update on replication and pathogenesis
-
Perlman, S. & Netland, J. Coronaviruses post-SARS: update on replication and pathogenesis. Nat. Rev. Microbiol. 7, 439-450 (2009).
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 439-450
-
-
Perlman, S.1
Netland, J.2
-
9
-
-
67651085081
-
Virus-host coevolution: Common patterns of nucleotide motif usage in flaviviridae and their hosts
-
Lobo, F. P. et al. Virus-host coevolution: common patterns of nucleotide motif usage in Flaviviridae and their hosts. PLoS ONE 4, 1-14 (2009).
-
(2009)
PLoS ONE
, vol.4
, pp. 1-14
-
-
Lobo, F.P.1
-
10
-
-
66149093121
-
Different evolutionary trajectories of European avian-like and classical swine H1N1 influenza A viruses
-
Dunham, E. J. et al. Different evolutionary trajectories of European Avian-Like and classical Swine H1N1 influenza A viruses. J. Virol. 83, 5485-5494 (2009).
-
(2009)
J. Virol.
, vol.83
, pp. 5485-5494
-
-
Dunham, E.J.1
-
11
-
-
46449083518
-
Patterns of evolution and host gene mimicry in influenza and other RNA viruses
-
Greenbaum, B. D., Levine, A. J., Bhanot, G. & Rabadan, R. Patterns of evolution and host gene mimicry in influenza and other RNA viruses. PLoS Pathog. 4, 1-9 (2008).
-
(2008)
PLoS Pathog.
, vol.4
, pp. 1-9
-
-
Greenbaum, B.D.1
Levine, A.J.2
Bhanot, G.3
Rabadan, R.4
-
12
-
-
43949113259
-
Convergent host-parasite codon usage between honeybee and bee associated viral genomes
-
Chantawannakul, P. & Cutler, R. W. Convergent host-parasite codon usage between honeybee and bee associated viral genomes. J. Invertebr. Pathol. 98, 206-210 (2008).
-
(2008)
J. Invertebr. Pathol.
, vol.98
, pp. 206-210
-
-
Chantawannakul, P.1
Cutler, R.W.2
-
13
-
-
33745654553
-
Evolutionary basis of codon usage and nucleotide composition bias in vertebrate DNA viruses
-
Shackelton, L. A., Parrish, C. R. & Holmes, E. C. Evolutionary basis of codon usage and nucleotide composition bias in vertebrate DNA viruses. J. Mol. Evol. 62, 551-563 (2006).
-
(2006)
J. Mol. Evol.
, vol.62
, pp. 551-563
-
-
Shackelton, L.A.1
Parrish, C.R.2
Holmes, E.C.3
-
14
-
-
1642412614
-
Analysis of synonymous codon usage in SARS coronavirus and other viruses in the nidovirales
-
Gu, W. J., Zhou, T., Ma, J. M., Sun, X. & Lu, Z. H. Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales. Virus Res. 101, 155-161 (2004).
-
(2004)
Virus Res.
, vol.101
, pp. 155-161
-
-
Gu, W.J.1
Zhou, T.2
Ma, J.M.3
Sun, X.4
Lu, Z.H.5
-
15
-
-
0036176330
-
Codon and amino acid usage in retroviral genomes is consistent with virus-specific nucleotide pressure
-
Berkhout, B., Grigoriev, A., Bakker, M. & Lukashov, V. V. Codon and amino acid usage in retroviral genomes is consistent with virus-specific nucleotide pressure. Aids Res. Hum. Retrov. 18, 133-141 (2002).
-
(2002)
AIDS Res. Hum. Retrov.
, vol.18
, pp. 133-141
-
-
Berkhout, B.1
Grigoriev, A.2
Bakker, M.3
Lukashov, V.V.4
-
16
-
-
0035036803
-
Evolution of base composition and codon usage bias in the genus flavivirus
-
Jenkins, G. M., Pagel, M., Gould, E. A., Zanotto, P. M. D. & Holmes, E. C. Evolution of base composition and codon usage bias in the genus Flavivirus. J. Mol. Evol. 52, 383-390 (2001).
-
(2001)
J. Mol. Evol.
, vol.52
, pp. 383-390
-
-
Jenkins, G.M.1
Pagel, M.2
Gould, E.A.3
Zanotto, P.M.D.4
Holmes, E.C.5
-
17
-
-
0030726485
-
Dinucleotide and stop codon frequencies in single-stranded RNA viruses
-
Rima, B. K. & McFerran, N. V. Dinucleotide and stop codon frequencies in single-stranded RNA viruses. J. Gen. Virol. 78, 2859-2870 (1997).
-
(1997)
J. Gen. Virol.
, vol.78
, pp. 2859-2870
-
-
Rima, B.K.1
McFerran, N.V.2
-
18
-
-
84948412921
-
On a class of pattern-recognition learning algorithms
-
Vapnik, V. N. & Chervone, Ay. On a class of pattern-recognition learning algorithms. Automat. Rem. Contr+. 25, 838-& (1965).
-
(1965)
Automat. Rem. Contr+.
, vol.25
, pp. 838
-
-
Vapnik, V.N.1
Chervone, A.2
-
19
-
-
34249753618
-
Support-vector networks
-
Cortes, C. & Vapnik, V. Support-vector networks. Mach. Learn. 20, 273-297 (1995).
-
(1995)
Mach. Learn.
, vol.20
, pp. 273-297
-
-
Cortes, C.1
Vapnik, V.2
-
21
-
-
0033636139
-
Support vector machine classification and validation of cancer tissue samples using microarray expression data
-
Furey, T. S. et al. Support vector machine classification and validation of cancer tissue samples using microarray expression data. Bioinformatics 16, 906-914 (2000).
-
(2000)
Bioinformatics
, vol.16
, pp. 906-914
-
-
Furey, T.S.1
-
22
-
-
0033971270
-
The mahalanobis distance
-
De Maesschalck, R., Jouan-Rimbaud, D. & Massart, D. L. The Mahalanobis distance. Chemometr. Intell. Lab. 50, 1-18 (2000).
-
(2000)
Chemometr. Intell. Lab.
, vol.50
, pp. 1-18
-
-
De Maesschalck, R.1
Jouan-Rimbaud, D.2
Massart, D.L.3
-
23
-
-
77956846403
-
Use of nucleotide composition analysis to infer hosts for three novel picorna-like viruses
-
Kapoor, A., Simmonds, P., Lipkin, W. I., Zaidi, S. & Delwart, E. Use of nucleotide composition analysis to infer hosts for three novel Picorna-like viruses. J. Virol. 84, 10322-10328 (2010).
-
(2010)
J. Virol.
, vol.84
, pp. 10322-10328
-
-
Kapoor, A.1
Simmonds, P.2
Lipkin, W.I.3
Zaidi, S.4
Delwart, E.5
-
24
-
-
0030923586
-
Compositional differences within and between eukaryotic genomes
-
Karlin, S. & Mrazek, J. Compositional differences within and between eukaryotic genomes. P. Natl. Acad. Sci. USA 94, 10227-10232 (1997).
-
(1997)
P. Natl. Acad. Sci. USA
, vol.94
, pp. 10227-10232
-
-
Karlin, S.1
Mrazek, J.2
-
25
-
-
20044382817
-
Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human
-
Song, H. D. et al. Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human. P. Natl. Acad. Sci. USA 102, 2430-2435 (2005).
-
(2005)
P. Natl. Acad. Sci. USA
, vol.102
, pp. 2430-2435
-
-
Song, H.D.1
-
26
-
-
34247647376
-
Natural mutations in the receptor binding domain of spike glycoprotein determine the reactivity of crossneutralization between palm civet coronavirus and severe acute respiratory syndrome coronavirus
-
Liu, L. et al. Natural mutations in the receptor binding domain of spike glycoprotein determine the reactivity of crossneutralization between palm civet coronavirus and severe acute respiratory syndrome coronavirus. J. Virol. 81, 4694-4700 (2007).
-
(2007)
J. Virol.
, vol.81
, pp. 4694-4700
-
-
Liu, L.1
-
27
-
-
84871415482
-
Genomic characterization of a newly discovered coronavirus associated with acute respiratory distress syndrome in humans
-
van Boheemen, S. et al. Genomic characterization of a newly discovered coronavirus associated with acute respiratory distress syndrome in humans. Mbio. 3, 1-9 (2012).
-
(2012)
Mbio
, vol.3
, pp. 1-9
-
-
Van Boheemen, S.1
-
28
-
-
84881190964
-
Structure of MERS-CoV spike receptor-binding domain complexed with human receptor DPP4
-
Wang, N. S. et al. Structure of MERS-CoV spike receptor-binding domain complexed with human receptor DPP4. Cell Res. 23, 986-993 (2013).
-
(2013)
Cell Res.
, vol.23
, pp. 986-993
-
-
Wang, N.S.1
-
29
-
-
20044388735
-
SARS-associated coronavirus transmitted from human to pig
-
Chen, W. J. et al. SARS-associated coronavirus transmitted from human to pig. Emerg. Infect. Dis. 11, 446-448 (2005).
-
(2005)
Emerg. Infect. Dis.
, vol.11
, pp. 446-448
-
-
Chen, W.J.1
-
30
-
-
84889573658
-
Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor
-
Ge, X. Y. et al. Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor. Nature 503, 535-+ (2013).
-
(2013)
Nature
, vol.503
-
-
Ge, X.Y.1
-
31
-
-
34250221097
-
Analysis of the genome sequence of an alpaca coronavirus
-
Jin, L. et al. Analysis of the genome sequence of an alpaca coronavirus. Virology 365, 198-203 (2007).
-
(2007)
Virology
, vol.365
, pp. 198-203
-
-
Jin, L.1
-
33
-
-
33749020042
-
Genomic signatures of human versus avian influenza A viruses
-
Chen, G. W. et al. Genomic signatures of human versus avian influenza A viruses. Emerg. Infect. Dis. 12, 1353-1360 (2006).
-
(2006)
Emerg. Infect. Dis.
, vol.12
, pp. 1353-1360
-
-
Chen, G.W.1
-
34
-
-
84871007119
-
Adaptive mutations in NEP compensate for defective H5N1 RNA replication in cultured human cells
-
Manz, B., Brunotte, L., Reuther, P. & Schwemmle, M. Adaptive mutations in NEP compensate for defective H5N1 RNA replication in cultured human cells. Nat. Commun. 3, 802 (2012).
-
(2012)
Nat. Commun.
, vol.3
, pp. 802
-
-
Manz, B.1
Brunotte, L.2
Reuther, P.3
Schwemmle, M.4
-
35
-
-
84883168540
-
Virus-specific factors associated with zoonotic and pandemic potential
-
Romero-Tejeda, A. & Capua, I. Virus-specific factors associated with zoonotic and pandemic potential. Influenza Other Respi. Viruses 7 Suppl 2, 4-14 (2013).
-
(2013)
Influenza Other Respi. Viruses
, vol.7
, pp. 4-14
-
-
Romero-Tejeda, A.1
Capua, I.2
-
36
-
-
84861307149
-
Discovery of seven novel mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus
-
Woo, P. C. Y. et al. Discovery of seven novel mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus. J. Virol. 86, 3995-4008 (2012).
-
(2012)
J. Virol.
, vol.86
, pp. 3995-4008
-
-
Woo, P.C.Y.1
-
37
-
-
13744252665
-
Complete genomic sequence of human coronavirus OC43: Molecular clock analysis suggests a relatively recent zoonotic coronavirus transmission event
-
Vijgen, L. et al. Complete genomic sequence of human coronavirus OC43: Molecular clock analysis suggests a relatively recent zoonotic coronavirus transmission event. J. Virol. 79, 1595-1604 (2005).
-
(2005)
J. Virol.
, vol.79
, pp. 1595-1604
-
-
Vijgen, L.1
-
38
-
-
0026502711
-
Over-representation and under-representation of short oligonucleotides in DNAsequences
-
Burge, C., Campbell, A. M. & Karlin, S. Over-representation and under-representation of short oligonucleotides in DNAsequences. P. Natl. Acad. Sci. USA 89, 1358-1362 (1992).
-
(1992)
P. Natl. Acad. Sci. USA
, vol.89
, pp. 1358-1362
-
-
Burge, C.1
Campbell, A.M.2
Karlin, S.3
-
39
-
-
78049497235
-
Mahalanobis distance
-
McLachlan, G. J. Mahalanobis distance. Resonance 4, 20-26 (1999).
-
(1999)
Resonance
, vol.4
, pp. 20-26
-
-
McLachlan, G.J.1
-
40
-
-
67650095909
-
-
(Tsinghua University Press, Beijing, China)
-
Xue, Y. & Chen, L. P. Statistical modeling and R software, 383-384 (Tsinghua University Press, Beijing, China, 2007).
-
(2007)
Statistical Modeling and R Software
, pp. 383-384
-
-
Xue, Y.1
Chen, L.P.2
|