CoastColour Round Robin data sets: A database to evaluate the performance of algorithms for the retrieval of water quality parameters in coastal waters

Earth System Science Data

Volumn 7, Issue 2, 2015, Pages 319-348

  Nechad, B ^a   Ruddick, K ^a   Schroeder, T ^b   Oubelkheir, K ^b   Blondeau Patissier, D ^c   Cherukuru, N ^b   Brando, V ^b   Dekker, A ^b   Clementson, L ^b   Banks, A C ^d,s   Maritorena, S ^e   Werdell, P J ^f   Sa C ^g   Brotas, V ^g   Caballero De Frutos, I ^h   Ahn, Y H ⁱ   Salama, S ^j   Tilstone, G ^k   Martinez Vicente, V ^k   Foley, D ^l   McKibben, M ^m   Nahorniak, J ^m   Peterson, T ⁿ   Silio Calzada A ^o   Rottgers R ^p   Lee, Z ^q   Peters, M ^r   Brockmann, C ^r   more..

^a Operational Dirct Natural Environment   (United States)

^b CSIRO   (Australia)

^c CHARLES DARWIN UNIVERSITY   (Australia)

^d INSTITUTE OF OCEANOGRAPHY   (Greece)

^e UNIVERSITY OF CALIFORNIA   (United States)

^f NASA GODDARD SPACE FLIGHT CENTER   (United States)

^g UNIVERSITY OF LISBON   (Portugal)

^h INSTITUTO DE CIENCIAS MARINAS DE ANDALUCÍA   (Spain)

ⁱ Korea Research Institute of Ships and Ocean Engineering   (South Korea)

^j UNIVERSITY OF TWENTE   (Netherlands)

^k PLYMOUTH MARINE LABORATORY   (United Kingdom)

^l NOAA EARTH SYSTEM RESEARCH LABORATORY   (United States)

^m OREGON STATE UNIVERSITY   (United States)

ⁿ OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

^o ENVIRONMENTAL HYDRAULICS INSTITUTE IH CANTABRIA   (Spain)

^p INSTITUTE OF MATERIALS RESEARCH   (Germany)

^q UNIVERSITY OF MASSACHUSETTS BOSTON   (United States)

^r GITZ   (Germany)

^s JOINT RESEARCH CENTRE   (Italy)

more..

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84948401581     PISSN: 18663508     EISSN: 18663516     Source Type: Journal    
DOI: 10.5194/essd-7-319-2015     Document Type: Article

References (69)

1. Albert, A., Mobley, C. D.: An analytical model for subsurface irradiance and remote sensing reflectance in deep and shallow Case 2 waters, Opt. Express, 11, 2873-2890, 2003.
2. Antoine, D., Siegel, D. A., Kostadinov, T. S., Maritorena, S., Nelson, N. B., Gentili, B., Vellucci, V., Guillecheau, N.: Variability of optical particle backscattering in contrasting biooptical oceanic regimes, Limnol. Oceanogr., 56, 3, 955-973, doi:10.4319/lo.2011.56.3.0955, 2011.
3. Arar, E. J., Collins, G. B.: Method 445.0-In vitro determination of chlorophyll a and pheophytin a in marine and freshwater algae by fluorescence, National Exposure Research Laboratory, Office of Research and Development, U.S. Environmental Protection Agency, Cincinnati, Ohio, USA, 1992.
4. Babin, M., Morel, A., Fournier-Sicre, V., Fell, F., Stramski, D.: Light scattering properties of marine particles in coastal and open ocean waters as related to the particle mass concentration, Limnol. Oceanogr., 28, 843-859, 2003a.
5. Babin, M., Stramski, D., Ferrari, G. M., Claustre, H., Bricaud, A., Obolensky, G., Hoepffner, N.: Variations in the light absorption coefficients of phytoplankton, nonalgal particles and dissolved organic matter in coastal waters around Europe, J. Geophys. Res., 108, 3211, doi:10.1029/2001JC000882, 2003b.
6. Barale, V., Jaquet, J.-M., Ndiayé, M.: Algal blooming patterns and anomalies in the Mediterranean Sea as derived from the Sea-WiFS data set (1998-2003), Remote Sens. Environ., 112, 3300-3313, 2008.
7. Barlow, R. G., Cummings, D. G., Gibb, S.W.: Improved resolution of mono and divinyl chlorophylls a and and zeaxanthin and lutein in phytoplankton extracts using reverse phase C-8 HPLC, Mar. Ecol.-Prog. Ser., 161, 303-307, 1997.
8. Blondeau-Patissier, D., Brando, V. E., Oubelkheir, K., Dekker, A. G., Clementson, L. A., Daniel, P.: Bio-optical variability of the absorption and scattering properties of the Queensland inshore and reef waters, Australia, J. Geophys. Res.-Oceans, 114, C5, doi:10.1029/2008JC005039, 2009.
9. Bouvet, M., Ramoino, F.: Equalization of MERIS L1b products from the 2nd reprocessing, European Space Agency, Technical Report TEC-EEP/2009.521/MB, Issue 1, Revision 3, 08/12/2009, 77 p., published by ESTEC, Noordwijk, the Netherlands, 2010.
10. Brewin, R. J. W., Sathyendranath, S., Mueller, D., Brockmann, C., Deschamps, P.-Y., Devred, E., Doerffer, R., Fomferra, N., Franz, B., Grant, M., Groom, S., Horseman, A., Hu, C., Krasemann, H., Lee, Z., Maritorena, S., Mélin, F., Peters, M., Platt, T., Regner, P., Smyth, T., Steinmetz, F., Swinton, J., Werdell, J., White, G. N.: The Ocean Colour Climate Change Initiative: III. A roundrobin comparison on in-water bio-optical algorithms, Rem. Sens. Environ., 162, 271-294, 2015.
11. Bricaud, A., Morel, A., Babin, M., Allali, K., Claustre, H.: Variations of light absorption by suspended particles with chlorophyll a concentration in oceanic (Case 1) waters: Analysis and implications for bio-optical models, J. Geophys. Res., 103, 31033-31044, 1998.
12. Brodie, J., De'ath, G., Devlin, M., Furnas, M. J., Wright, M.: Spatial and temporal patterns of near surface chlorophyll a in the Great Barrier Reef lagoon, Mar. Freshwater Res., 58, 342-353, 2007.
13. Buitenhuis, E. T., Vogt, M., Moriarty, R., Bednaršek, N., Doney, S. C., Leblanc, K., Le Quéré, C., Luo, Y.-W., O'Brien, C., O'Brien, T., Peloquin, J., Schiebel, R., Swan, C.: MAREDAT: towards a world atlas of MARine Ecosystem DATa, Earth Syst. Sci. Data, 5, 227-239, doi:10.5194/essd-5-227-2013, 2013.
14. Chavez, F. P., Pennington, J. T., Castro, C. G., Ryan, J. P., Michisaki, R. P., Schlining, B., Walz, P., Buck, K. R., McFadyen, A., Collins, C. A.: Biological and chemical consequences of the 1997-1998 El Ninõ in central California waters, Prog. Oceanogr., 54, 205-232, doi:10.1016/S0079-6611(02)00050-2, 2002.
15. Cherukuru, N., Brando, V. E., Schroeder, T., Clementson, L. A., Dekker, A. G.: Influence of river discharge and ocean currents on coastal optical properties, Cont. Shelf Res., 84, 188-203, 2014.
16. Clesceri, L. S., Greenberg, A. E., Eaton, A. D.: Standard methods for the examination of water and wastewater, 20th edition, American Public Health Association, 1325 pp.,Washington D.C., 1998.
17. Doerffer, R.: Protocols for the validation of MERIS water products, ESA/GKSS Doc. No. PO-TN-MEL-GS-0043, 46 p., available as Appendix at: http://envisat.esa.int/workshops/mavt-2003, MERIS protocols, Issue 1.3.5, 2002.
18. Doerffer, R.: Alternative Atmospheric Correction Procedure for Case 2 Water Remote Sensing using MERIS, 2011.
19. Doerffer, R., Schönfeld, W.: Validation transect between Cuxhaven and Helgoland: GKSS Technical Note, 18 February 2009, Helmholtz-Centrum Geesthacht, Geesthacht, 2009.
20. Dolan, J. R., Claustre, H., Carlotti, F., Plounevez, S., Moutin, T.: Microzooplankton diversity: relationships of tintinnid ciliates with resources, competitors and predators from the Atlantic Coast of Morocco to the Eastern Mediterranean, Deep-Sea Res. Pt. I, 49, 1217-1232, 2002.
21. Freudenthal, T., Meggers, H., Henderiks, J., Kuhlmann, H., Moreno, A., Wefer, G.: Upwelling intensity and filament activity off Morocco during the last 250,000 years, Deep-Sea Res. Pt. II, 49, 3655-3674, 2002.
22. Gohin, F.: Annual cycles of chlorophyll a, non-algal suspended particulate matter, and turbidity observed from space and in-situ in coastal waters, Ocean Sci., 7, 705-732, doi:10.5194/os-7-705-2011, 2011.
23. Groom, S. B., Herut, B., Brenner, S., Zodiatis, G., Psarra, S., Kress, N., Krom, M. D., Law, C. S., Dracopoulos, P.: Satellitederived spatial and temporal biological variability in the Cyprus Eddy, Deep-Sea Res. Pt. II, 52, 2990-3010, 2005.
24. Groom, S. B., Martinez-Vicente, V., Fishwick, J. R., Tilstone, G., Moore, G., Smyth, T. J., Harbour, D.: The Western English Channel observatory: Optical characteristics of station 4, J. Marine Syst., 77, 278-295, 2009.
25. Guillocheau, N.:--Correction Experiment Report, ICESS, University of California, Santa Barbara, CA, USA, 2003.
26. Harrison, A.W., Coombes, C. A.: An opaque cloud cover model of sky short wavelength radiance, Sol. Energy, 41, 387-392, 1988.
27. Holm-Hansen, O., Lorenzen, C. J., Holmes, R. W., Strickland, J. D. H.: Fluorometric determination of chlorophyll, Journal du Conseil Permanent International pour l'Exploration de la Mer, 30, 33-15, 1965.
28. Hooker, S. B., Van Heukelem, L., Thomas, C. S., Claustre, H., Ras, J., Barlow, R. G., Sessions, H., L., S., Perl, J., Trees, C. C., Stuart, V., Head, E., Clementson, L. A., Fishwick, J. R., Llewellyn, C., Aiken, J.: The Second SeaWiFS HPLC Analysis Round-Robin Experiment (SeaHARRE-2), NASA Aeronautics and Space Information, Goddard Space Flight Center, Greenbelt, Maryland, USA, 2005.
29. IOCCG: Remote Sensing of Inherent Optical Properties: Fundamentals, Tests of Algorithms, and Applications, edited by: Lee, Z.-P., Reports of the International Ocean-Colour Coordinating Group, No. 5, IOCCG, Dartmouth, Canada, pp. 126, 2006.
30. IOC/UNESCO: Protocols for Joint Global Ocean Carbon Flux Study (JGOFS) Core Measurements, Paris, 1994.
31. Karageorgis, A. P., Georgopoulos, D., Kanellopoulos, T. D., Mikkelsen, O. A., Pagou, K., Kontoyiannis, H., Pavlidou, A., Anagnostou, C.: Spatial and seasonal variability of particulate matter optical and size properties in the Eastern Mediterranean Sea, J. Marine Syst., 105-108, 123-134, 2012.
32. Kostadinov, T. S., Siegel, D. A., Maritorena, S., Guillocheau, N.: Ocean color observations and modeling for an optically complex site: Santa Barbara Channel, California, USA, J. Geophys. Res., 112, C07011, doi:10.1029/2006JC003526, 2007.
33. Llewellyn, C. A., Fishwick, J. R., Blackford, J. C.: Phytoplankton community assemblage in the English Channel: a comparison using chlorophyll a derived from HPLC-CHEMTAX and carbon derived from microscopy cell counts, J. Plankton Res., 27, 103-119, 2005.
34. Loisel, H., Morel, A.: Light scattering and chlorophyll concentration in Case 1 waters: a re-examination., Limnol. Oceanogr. (Methods), 43, 847-857, 1998.
35. Loisel, H., Vantrepotte, V., Norkvist, K., Mériaux, X., Kheireddine, M., Ras, J., Pujo-Pay, M., Combet, Y., Leblanc, K., Dall'Olmo, G., Mauriac, R., Dessailly, D., Moutin, T.: Characterization of the bio-optical anomaly and diurnal variability of particulate matter, as seen from scattering and backscattering coefficients, in ultra-oligotrophic eddies of the Mediterranean Sea, Biogeosciences, 8, 3295-3317, doi:10.5194/bg-8-3295-2011, 2011.
36. Maffione, R. A., Dana, D. R.: Instruments and methods for measuring the backward-scattering coefficient of ocean waters, Appl. Optics, 36, 6057-6067, 1997.
37. Maritorena, S., Lee, Z.-P., Du, K.-P., Loisel, H., Doerffer, R., Roesler, C., Tanaka, A., Babin, M., Kopelevich, O. V.: Syntheric and in situ data sets for algorithm testing. Remote Sensing of Inherent Optical Properties: Fundamentals, Tests of Algorithms, and Applications, IOCCG, Dartmouth, Canada, 73-79, 20065, 13-18, 2006.
38. Martinez-Vicente, V., Land, P. E., Tilstone, G. H., Widdicombe, C., Fishwick, J. R.: Particulate scattering and backscattering related to water constituents and seasonal changes in the Western English Channel, J. Plankton Res., 32, 603-619, 2010.
39. Mobley, C. D.: Light and water: radiative transfer in natural waters, Academic Press, London, UK, 1994.
40. Mobley, C. D.: Estimation of the remote sensing reflectance from above-surface measurements, Appl. Optics, 38, 7442-7455, 1999.
41. Mobley, C. D., Sundman, L. K.: HYDROLIGHT 5/ECOLIGHT 5 Technical Documentation, Sequoia Scientific, Inc., 2700 Richards Road, Suite 107, Bellevue, WA 98005, 2008.
42. Morel, A., Prieur, L.: Analysis of variations in ocean color, Limnol. Oceanogr., 22, 709-722, 1977.
43. Morel, A., Antoine, D., Gentili, B.: Bidirectional reflectance of oceanic waters: accounting for Raman emission and varying particle scattering phase function, Appl. Optics, 41, 6289-6306, 2002.
44. O'Brien, C. J., Peloquin, J. A., Vogt, M., Heinle, M., Gruber, N., Ajani, P., Andruleit, H., Arístegui, J., Beaufort, L., Estrada, M., Karentz, D., Kopczýnska, E., Lee, R., Poulton, A. J., Pritchard, T., Widdicombe, C.: Global marine plankton functional type biomass distributions: coccolithophores, Earth Syst. Sci. Data, 5, 259-276, doi:10.5194/essd-5-259-2013, 2013.
45. Odermatt, D., Gitelson, A. A., Brando, V. E., Schaepman, M.: Review of constituent retrieval in optically deep and complex waters from satellite imagery, Remote Sens. Environ., 118, 116-126, 2012.
46. O'Reilly, J. E., Maritorena, S., Mitchell, B. G., Siegel, D. A., Carder, K. L., Garver, S. A., Kahru, M., McClain, C. R.: Ocean color chlorophyll algorithms for SeaWiFS, J. Geophys. Res., 103, 24937-24953, 1998.
47. Oubelkheir, K., Claustre, H., Sciandra, A., Babin, M.: Biooptical and biogeochemical properties of different trophic regimes in oceanic waters, Limnol. Oceanogr., 50, 1795-1809, 2005.
48. Oubelkheir, K., Clementson, L. A., Webster, I., Ford, P., Dekker, A. G., Radke, L., Daniel, P.: Using inherent optical properties to investigate biogeochemical dynamics in a tropical macrotidal coastal system, J. Geophys. Res.-Oceans, 111, C7, doi:10.1029/2005JC003113, 2006.
49. Parsons, T. R., Maita, Y., Lalli, C. M.: A manual of Chemical and Biological Methods for seawater Analysis, Pergamon Press, New York, USA, 173 pp., 1984.
50. Pegau, W. S., Zaneveld, J. R. V., Mitchell, B. G., Mueller, J. L., Kahru, M.,Wieland, J., Stramska, M.: Inherent Optical Properties: Instruments, Characterizations, Field Measurements and Data Analysis Protocols, volume IV, in: Ocean Optics Protocols for Satellite Ocean Color Sensor Validation, Revision 4, NASA Goddard Space Flight Center, Greenbelt,Maryland, USA, 76 pp., 2003.
51. Pitcher, G. C., Probyn, T. A.: Anoxia in southern Benguela during the autumn of 2009 and its linkage to a bloom of the dinoflagellate Ceratium balechii, Harmful Algae, 11, 23-32, 2011.
52. Probyn, T. A.: Nitrogen uptake by size-fractionated phytoplankton populations in the southern Benguela upwelling system, Mar. Ecol.-Prog. Ser., 22, 249-258, 1985.
53. Ruddick, K., Brockmann, C., Doerffer, R., Lee, Z., Brotas, V., Fomfera, N., Groom, S. B., Krasemann, H., Martinez-Vicente, V., Sá, C., Santer, R., Sathyendranath, S., Stelzer, K., Pinnock, S.: The CoastColour project regional algorithm round robin exercise, in: Remote Sensing of the Coastal Ocean, Land and Atmosphere Environment, SPIE, Incheon, Republic of Korea, 7858-7807, 2010.
54. Ruddick, K. G., De Cauwer, V., Park, Y., Moore, G.: Seaborne measurements of near infrared water-leaving reflectance-the similarity spectrum for turbid waters, Limnol. Oceanogr., 51, 1167-1179, 2006.
55. Schaffelke, B., Carleton, J., Skuza, M., Zagorskis, I., Furnas, M. J.:Water quality in the inshore Great Barrier Reef lagoon: Implications for long-term monitoring and management, Mar. Pollut. Bull., 65, 249-260, 2012.
56. Strickland, J. D. H., Parsons, T. R.: A practical handbook of the sea water analysis, Fisheries Research Board of Canada, Ottawa, Bulletin 167, 311 p., 1972.
57. Tassan, S., Ferrari, G. M.: An alternative approach to absorption measurements of aquatic particles retained on filters, Limnol. Oceanogr., 40, 1358-1368, 1995.
58. Tilstone, G., Moore, G., Sorensen, K., Doerffer, R., Rottgers, R., Ruddick, K. G., Pasterkamp, R., Jorgensen, P. V.: Regional Validation of MERIS Chlorophyll products in North Sea coastal waters: REVAMP protocols, ENVISAT validation workshop European Space Agency, available as Appendix at: https://earth.esa. int/workshops/mavt-2003/, Frascatti, Italy, 20-24 October 2003.
59. Tilstone, G., Peters, S., van Der Woerd, H., Eleveld, M., Ruddick, K., Schönfeld, W., Krasemann, H., Martinez-Vicente, V., Blondeau-Patissier, D., Jorgensen, P. V., Rottgers, R., Sorensen, K.: Variability in specific-absorption properties and their use in Ocean Colour Algorithms for MERIS in North Sea coastal waters, Remote Sens. Environ., 118, 320-338, 2012.
60. Toole, D. A., Siegel, D. A., Wenzies, D. W, Neumann, M. J., Smith, R. C.: Remote-sensing reflectance determinations in the coastal ocean environment: impact of instrumental characteristics and environmental variability, Appl. Optics, 39, 3, 456-469, 2000.
61. Tzortziou, M., Subramaniam, A., Herman, J. R., Gallegos, C. L., Neale, P. J., Harding, L. W. J.: Remote sensing reflectance and inherent optical properties in the mid Chesapeake Bay, Estuarine, Coastal and Shelf Science, 72, 16-32, 2007.
62. van der Linde, D. W.: Protocol for the determination of total suspended matter in oceans and coastal zones, Technical Note I.98.182, European Commission Joint Research Centre, Ispra, Italy, 1998.
63. Van Heukelem, L., Thomas, C. S.: Computer-assisted highperformance liquid chromatography method development with applications to the isolation and analysis of phytoplankton pigments, J. Chromatogr. A, 910, 31-49, 2001.
64. Werdell, P. J.: An evaluation of inherent optical property data for inclusion in the NASA Bio-optical Marine Algorithm Data Set, NASA Ocean Biology Processing Group paper, NASA Goddard Space Flight Cent., Greenbelt, Md., available at: http://seabass. gsfc.nasa.gov/seabass/data/werdell-nomad-iop-qc.pdf, 2005.
65. Werdell, P. J., Bailey, S. W.: An improved in situ bio-optical data set for ocean color algorithm development and satellite data product validation, Remote Sens. Environ., 98, 122-140, 2005.
66. Werdell, P. J., Bailey, S. W., Fargion, G. S., Pietras, K., Knobelspiesse, K. D., Feldman, G. C., McClain, C.: Unique data repository facilitates ocean color satellite validation, EOS, Transactions, American Geophysical Union, 84, 377-392, 2003.
67. Werdell, P. J., Franz, B. A., Bailey, S. W., Feldman, G. C., Boss, E., Brando, V. E., Dowell, M. D., Hirata, T., Lavender, S. J., Lee, Z., Loisel, H., Maritorena, S., Mélin, F., Moore, T. S., Smyth, T. J., Antoine, D., Devred, E., Hembise Fanton d'Andon, O., Mangin, A.: Generalized ocean color inversion model for retrieving marine inherent optical properties, Appl. Optics, 52, 2019-2037, 2013.
68. WET Labs ac-9 Protocol: Revision H, WET Labs, Inc., Philomath, OR, USA, 42 pp., 2003.
69. Wright, S. W., Jeffrey, S. W., Mantoura, R. F. C., Llewellyn, C. A., Bjornland, T., Repeta, D. J.: Improved HPLC method for the analysis of chlorophylls and carotenoids from marine phytoplankton, Mar. Ecol.-Prog. Ser., 77, 183-196, 1991