Genotypes of infectious bronchitis viruses circulating in the Middle East between 2009 and 2014

Virus Research

Volumn 210, Issue , 2015, Pages 198-204

  Ganapathy, Kannan ^a   Ball, Christopher ^a   Forrester, Anne ^a  

^a UNIVERSITY OF LIVERPOOL   (United Kingdom)

Author keywords

Epidemiology; Genotyping, Middle East; Infectious bronchitis virus

Indexed keywords

CHLOROFORM; PHENOL; VIRUS RNA; VIRUS VACCINE; VIRUS PROTEIN;

AMINO ACID SUBSTITUTION; ANIMAL TISSUE; ARTICLE; AVIAN INFECTIOUS BRONCHITIS VIRUS; CHICKEN; CONTROLLED STUDY; EGYPT; GENE SEQUENCE; GENOTYPE; JORDAN; KUWAIT; LEBANON; MIDDLE EAST; MOLECULAR EPIDEMIOLOGY; NONHUMAN; OMAN; PHYLOGENY; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SAUDI ARABIA; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SOLVENT EXTRACTION; UNITED ARAB EMIRATES; VIRUS GENE; VIRUS STRAIN; ANIMAL; CLASSIFICATION; CLUSTER ANALYSIS; CORONAVIRUS INFECTIONS; DNA SEQUENCE; GENETIC VARIATION; GENETICS; ISOLATION AND PURIFICATION; POLYMERASE CHAIN REACTION; POULTRY DISEASES; SEQUENCE HOMOLOGY; VETERINARY; VIROLOGY;

ANIMALS; CHICKENS; CLUSTER ANALYSIS; CORONAVIRUS INFECTIONS; GENETIC VARIATION; GENOTYPE; INFECTIOUS BRONCHITIS VIRUS; MIDDLE EAST; PHYLOGENY; POLYMERASE CHAIN REACTION; POULTRY DISEASES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; VIRAL STRUCTURAL PROTEINS;

EID: 84947791697     PISSN: 01681702     EISSN: 18727492     Source Type: Journal    
DOI: 10.1016/j.virusres.2015.07.019     Document Type: Article

References (39)

1. Ababneh M., Dalab A.E., Alsaad S., Al-Zghoul M. Presence of infectious bronchitis virus strain CK/CH/LDL/97I in the Middle East. ISRN Vet. Sci. 2012, 201721.
2. Abdel-Moneim A.S., El-Kady M.F., Ladman B.S., Gelb J. S1 gene sequence analysis of a nephropathogenic strain of avian infectious bronchitis virus in Egypt. Virol. J. 2006, 3:78.
3. Abdel-Moneim A., Afifi M., El-Kady M. Emergence of a novel genotype of avian infectious bronchitis virus in Egypt. Arch. Virol. 2012, 1-5.
4. Alexander D.J., Gough R.E. A long-term study of the pathogenesis of infection of fowls with three strains of avian infectious bronchitis virus. Res. Vet. Sci. 1978, 24:228-233.
5. Al-Shekaili T., Baylis M., Ganapathy K. Molecular detection of infectious bronchitis and avian metapneumoviruses in Oman backyard poultry. Res. Vet. Sci. 2015, 99:46-52.
6. Amin O.G., Valastro V., Salviato A., Drago A., Cattoli G., Monne I. Circulation of QX-like infectious bronchitis virus in the Middle East. Vet. Rec. 2012, 171:530.
7. ® Card 2012, 136-138. Druckerei Schröder, Wetter.
8. Awad F., Forrester A., Jones R., Capua I., Baylis M., Ganapathy K. Immunopathogenesis of infectious bronchitis virus related to IS/1494/06 and IS/885 in specific-pathogen-free chicks. XVIIIth Congress World Veterinary Poultry Association 2013.
9. Awad F., Baylis M., Ganapathy K. Detection of variant infectious bronchitis viruses in broiler flocks in Libya. Int. J. Vet. Sci. Med. 2014, 2:78-82.
10. Awad F., Baylis M., Jones R.C., Ganapathy K. Evaluation of Flinders Technology Associates cards for storage molecular detection of avian metapneumoviruses. Avian Pathol. J. W.V.P.A. 2014, 43:125-129.
11. Awad F., Chhabra R., Forrester A., Baylis M., Lemiere S., Capua I., Hussein H., Ganapathy K. Protection against Middle East variant infectious bronchitis viruses: use of heterologous live vaccines in commercial broiler chicks. 8th International Symposium on Avian Corona and Pneumoviruses and Complicating Pathogens 2014.
12. Benyeda Z., Mato T., Suveges T., Szabo E., Kardi V., Abonyi-Toth Z., Rusvai M., Palya V. Comparison of the pathogenicity of QX-like, M41 and 793/B infectious bronchitis strains from different pathological conditions. Avian Pathol. 2009, 38:449-456.
13. Caron L. Etiology and immunology of infectious bronchitis virus. Rev. Bras. Ciênc. Avíc. 2010, 12:115-119.
14. Cavanagh D., Davis P.J., Cook J.K.A. Infectious bronchitis virus: evidence for recombination within the Massachusetts serotype. Avian Pathol. 1992, 21:401-408.
15. Cavanagh D., Mawditt K., Britton P., Naylor C.J. Longitudinal field studies of infectious bronchitis virus and avian pneumovirus in broilers using type-specific polymerase chain reactions. Avian Pathol. 1999, 28:593-605.
16. Chomczynski P., Sacchi N. The single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction: twenty-something years on. Nat. Protoc. 2006, 1:581-585.
17. Cook J.A., Mockett A.P.A. Epidemiology of Infectious bronchitis virus. The Coronaviridae 1995, 317-335. Springer, USA. S. Siddell (Ed.).
18. Dolz R., Pujols J., Ordóñez G., Porta R., Majó N. Molecular epidemiology and evolution of avian infectious bronchitis virus in Spain over a fourteen-year period. Virology 2008, 374:50-59.
19. Fleischmann W.R. Viral genetics. Medical Microbiology 1996, University of Texas Medical Branch, Galveston, TX. S. Baron (Ed.).
20. Kahya S., Coven F., Temelli S., Eyigor A., Carli K. Presence of IS/1494/06 genotype-related infectious bronchitis virus in breeder and broiler flocks in Turkey Ankara. Üniv. Vet. Fak. Derg. 2013, 60:27-31.
21. Keeler S.P., Ferro P.J., Brown J.D., Fang X., El-Attrache J., Poulson R., Jackwood M.W., Stallknecht D.E. Use of FTA sampling cards for molecular detection of avian influenza virus in wild birds. Avian Dis. 2012, 56:200-207.
22. Liu S., Kong X. A new genotype of nephropathogenic infectious bronchitis virus circulating in vaccinated and non-vaccinated flocks in China. Avian Pathol. 2004, 33:321-327.
23. Martin E.A., Brash M.L., Hoyland S.K., Coventry J.M., Sandrock C., Guerin M.T., Ojkic D. Genotyping of infectious bronchitis viruses identified in Canada between 2000 and 2013. Avian Pathol. 2014, 43:264-268.
24. Meir R., Rosenblut E., Perl S., Kass N., Ayali G., Perk S., Hemsani E. Identification of a novel nephropathogenic infectious bronchitis virus in Israel. Avian Dis. 2004, 48:635-641.
25. Perozo F., Villegas P., Estevez C., Alvarado I., Purvis L.B. Use of FTA filter paper for the molecular detection of Newcastle disease virus. Avian Pathol. 2006, 35:93-98.
26. ChromasPRO [on line] . http://technelysium.com.au/2014.
27. Purvis L.B., Villegas P., Perozo F. Evaluation of FTA paper and phenol for storage, extraction and molecular characterization of infectious bursal disease virus. J. Virol. Methods 2006, 138:66-69.
28. Raj G.D., Jones R.C. Infectious bronchitis virus: immunopathogenesis of infection in the chicken. Avian Pathol. 1997, 26:677-706.
29. Roussan D.A., Haddad R., Khawaldeh G. Molecular survey of avian respiratory pathogens in commercial broiler chicken flocks with respiratory diseases in Jordan. Poult. Sci. 2008, 87:444-448.
30. Roussan D.A., Khawaldeh G.Y., Shaheen I.A. Infectious bronchitis virus in Jordanian chickens: seroprevalence and detection. Can. Vet. J. 2009, 50:77-80.
31. Seyfi Abad Shapouri M.R., Mayahi M., Assasi K., Charkhkar S. A survey of the prevalence of infectious bronchitis virus type 4/91 in Iran. Acta Vet. Hung. 2004, 52:163-166.
32. Shen S., Wen Z.L., Liu D.X. Emergence of a coronavirus infectious bronchitis virus mutant with a truncated 3b gene: functional characterization of the 3b protein in pathogenesis and replication. Virology 2003, 311:16-27.
33. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 2013, 30:2725-2730.
34. Taubenberger J.K., Kash J.C. Influenza virus evolution, host adaptation, and pandemic formation. Cell Host Microbe 2010, 7:440-451.
35. Toffan A., Bonci M., Bano L., Bano L., Valastro V., Vascellari M., Capua I., Terregino C. Diagnostic and clinical observation on the infectious bronchitis virus strain Q1 in Italy. Vet. Ital. 2013, 49:347-355.
36. Toro H., van Santen Vl Fau - Jackwood M.W., Jackwood M.W. Genetic diversity and selection regulates evolution of infectious bronchitis virus. Avian Dis. 2012, 56.
37. Villarreal L.Y.B., Brandao P.E., Chacon J.L., Assayag M.S., Maiorka P.C., Raffi P., Saidenberg A.B.S., Jones R.C., Ferreira A.J.P. Orchitis in roosters with reduced fertility associated with avian infectious bronchitis virus and avian metapneumovirus infections. Avian Dis. 2007, 51:900-904.
38. Worthington K.J., Currie R.J.W., Jones R.C. A reverse transcriptase polymerase chain reaction survey of infectious bronchitis virus genotypes in Western Europe from 2002 to 2006. Avian Pathol. 2008, 37:247-257.
39. Yu L., Jiang Y., Low S., Wang Z., Nam S.J., Liu W., Kwangac J. Characterization of three infectious bronchitis virus isolates from China associated with proventriculus in vaccinated chickens. Avian Dis. 2001, 45:416-424.