Molecular Markers and Genetic Population Structure of Pelagic Sharks

Sharks of the Open Ocean: Biology, Fisheries and Conservation

Volumn , Issue , 2009, Pages 323-333

  Heist, Edward J ^a  

^a SOUTHERN ILLINOIS UNIVERSITY   (United States)

Author keywords

Conservation genetics; Fishery management; Fishery stocks; Genetics; Molecular markers; Population genetics

Indexed keywords

EID: 84947767620     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9781444302516.ch28     Document Type: Chapter

References (45)

1. Ashley, M. V. and Dow, B. D. (1994) The use of microsatellite analysis in population biology:Background, methods and potential applications. In: Molecular Ecology and Evolution:Approaches and Applications (eds. B. Schierwater, B. Streit and R. DeSalle). Birkhauser Verlag, Basel, Switzerland, pp. 185-201.
2. Baum, J. K., Myers, R. A., Kehler, D. G., Worm, B., Harley, S. J. and Doherty, P. A. (2003) Collapse and conservation of shark populations in the northwest Atlantic. Science 299, 389-392.
3. Bernatchez, L. and Danzmann, R. G. (1993) Congruence in control-region sequence and restriction site variation in mitochondrial DNA of brook charr (Salvelinus fontinalis Mitchill). Molecular Biology and Evolution 10, 1002-1014.
4. Bowen, B. W. (1999) Preserving genes, species, or ecosystems? Healing the fractured foundations of conservation policy. Molecular Ecology 8, S5-S10.
5. Brown, W. M., George, M. and Wilson, A. C. (1979) Rapid evolution of animal mitochondrial DNA. Proceedings of the National Academy of Sciences 76, 1967-1971.
6. Carvalho, G. R. and Hauser, L. (1994) Molecular genetics and the stock concept in fisheries. Reviews in Fish Biology and Fisheries 4, 326-350.
7. Crow, J. F. and Aoki, K. (1984) Group selection for a polygenic behavioral trait: Estimating the degree of population subdivision. Proceedings of the National Academy of Sciences 81, 6073-6077.
8. Dizon, A. E., Taylor, B. L. and O'Corry-Crowe, G. M. (1995) Why statistical power is necessary to link analyses of molecular variation to decisions about population structure. In: Evolution and the Aquatic Ecosystem (eds. J. L. Neilson and D. A. Powers). American Fisheries Society, Bethesda, MD, pp. 288-294.
9. Edwards, S. V. and Potts, W. K. (1996) Polymorphism of genes in the major histocompatibility complex (MHC): Implications for conservation of vertebrates. In: Molecular Genetic Approaches in Conservation (eds. T. B. Smith and R. K. Wayne). Oxford University Press, New York, pp. 214-237.
10. Eitner, B. J. (1995) Systematics of the genus Alopias (Lamniformes: Alopiidae) with evidence for the existence of an unrecognized species. Copeia 1995, 562-571.
11. Feldheim, K. A., Gruber, S. H. and Ashley, M. V. (2002) The breeding biology of lemon sharks at a tropical nursery lagoon. Proceedings of the Royal Society of London, Series B 269, 1655-1661.
12. Gold, J. R., Richardson, L. R. and Turner, T. F. (1999) Temporal stability and spatial divergence of mitochondrial DNA haplotype frequencies in red drum (Sciaenops ocellatus) from coastal regions of the western Atlantic Ocean and Gulf of Mexico. Marine Biology 133, 593-602.
13. Grossberg, R. D., Levitan, D. R. and Cameron, B. B. (1996) Characterization of genetic structure and genealogies using RAPD-PCR markers: A random primer for the novice and nervous. In: Molecular Zoology: Advances, Strategies, and Protocols (eds. J. D. Ferraris and S. R. Palumbi). John Wiley & Sons, New York, pp. 67-100.
14. Hedrick, P. W. (1999) Perspective: Highly variable loci and their interpretation in evolution and conservation. Evolution 53, 313-318.
15. Heist, E. J., Musick, J. A. and Graves, J. E. (1996) Genetic population structure of the shortfin mako (Isurus oxyrinchus) inferred from restriction fragment length polymorphism analysis of mitochondrial DNA. Canadian Journal of Fisheries and Aquatic Sciences 53, 583-588.
16. Hueter, R. E., Heupel, M. R., Heist, E. J. and Keeney, D. B. (2004) The implications of philopatry in sharks for the management of shark fisheries. Journal of Northwest Atlantic Fishery Science 35 (article 7).
17. Karl, S. A. (1996) Application of anonymous nuclear loci to conservation biology. In: Molecular Genetic Approaches in Conservation (eds. T. B. Smith and R. K. Wayne). Oxford University Press, New York, pp. 38-83.
18. Keeney, D. B. and Heist, E. J. (2003) Characterization of microsatellite loci isolated from the blacktip shark and their utility in requiem and hammerhead sharks. Molecular Ecology Notes 3, 501-504.
19. Keeney, D. B., Heupel, M. R., Hueter, R. E. and Heist, E. J. (2004) Genetic heterogeneity among blacktip shark, Carcharhinus limbatus, continental nurseries along the US Atlantic and Gulf of Mexico. Marine Biology 3, 1039-1046.
20. Keeney, D. B., Heupel, M. R., Hueter, R. E. and Heist, E. J. (2005) The genetic structure of blacktip shark (Carcharhinus limbatus) nurseries in the western Atlantic, Gulf of Mexico, and Caribbean Sea inferred from control region sequences and microsatellites. Molecular Ecology 14, 1911-1923.
21. Kohler, N. E. and Turner, P. A. (2008) Stock structure of the blue shark (Prionace glauca) in the North Atlantic Ocean based on tagging data. In: Sharks of the Open Ocean: Biology, Fisheries and Conservation (eds. M. D. Camhi, E. K. Pikitch and E. A. Babcock). Blackwell Publishing, Oxford, UK.
22. Kohler, N. E., Casey, J. G. and Turner, P. A. (1998) NMFS Cooperative Shark Tagging Program 1962-93: An atlas of shark tag and recapture data. Marine Fisheries Review 60, 1-87.
23. Martin, A. P., Naylor, G. J. P. and Palumbi, S. R. (1992) Rates of mitochondrial DNA evolution in sharks are slow compared with mammals. Nature 357, 153-155.
24. Meyer, A. (1993) Evolution of mitochondrial DNA in fishes. In: Biochemistry and Molecular Biology of Fishes (eds. P. W. Hochachka and T. P. Mommsen). Elsevier, New York, pp. 1-38.
25. Murphy, R. W., Sites, J. M. J., Buth, D. G. and Haufler, C. H. (1996) Proteins: Isozyme electrophoresis. In: Molecular Systematics (eds. D. M. Hillis, C. Moritz and B. K. Mable). Sinauer Associates, Sunderland, MA, pp. 51-120.
26. Musick, J. A., Burgess, G., Cailliet, G., Camhi, M. and Fordham, S. (2000) Management of sharks and their relatives (Elasmobranchii). Fisheries 25, 9-13.
27. O'Connell, M. and Wright, J. M. (1997) Microsatellite DNA in fishes. Reviews in Fish Biology and Fisheries 7, 331-363.
28. Palumbi, S. R. and Baker, C. S. (1994) Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales. Molecular Biology and Evolution 11, 426-435.
29. Pardini, A. T., Jones, C. S., Noble, L. R., Kreiser, B., Malcolm, H., Bruce, B. D., Stevens, J. D., Cliff, G., Scholl, M. C., Francis, M., Duffy, C. A. J. and Martin, A. P. (2001) Sex-biased dispersal of great white sharks - In some respects, these sharks behave more like whales and dolphins than other fish. Nature 412, 139-140.
30. Pratt, H. L. and Carrier, J. C. (2001) A review of elasmobranch reproductive behavior with a case study on the nurse shark, Ginglymostoma cirratum. Environmental Biology of Fishes 60, 157-188.
31. Ryman, N., Utter, F. and Laikre, L. (1995) Protection of intraspecific biodiversity of exploited fishes. Reviews in Fish Biology and Fisheries 5, 417-446.
32. Sambrook, J. and Russell, D. W. (2001) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
33. Schindler, D. E., Essington, T. E., Kitchell, J. F., Boggs, C. and Hilborn, R. (2002) Sharks and tunas: Fisheries impacts on predators with contrasting life histories. Ecological Applications 12, 735-748.
34. Schrey, A. W. and Heist, E. J. (2002) Microsatellite markers for the shortfin mako and cross-species amplification in Lamniformes. Conservation Genetics 3, 459-461.
35. Schrey, A. W. and Heist, E. J. (2003) Microsatellite analysis of population structure in the shortfin mako (Isurus oxyrinchus). Canadian Journal of Fisheries and Aquatic Sciences 60, 670-675.
36. Shivji, M. S., Pank, M., Natanson, L. J., Kohler, N. E. and Stanhope, M. J. (2008) Case study: Rapid species identification of pelagic shark tissues using genetic approaches. In: Sharks of the Open Ocean: Biology, Fisheries and Conservation (eds. M. D. Camhi, E. K. Pikitch and E. A. Babcock). Blackwell Publishing, Oxford, UK.
37. Smith, P. J. (1986) Low genetic variation in sharks (Chondrichthyes). Copeia 1986, 202-207.
38. Utter, F. M. (1991) Biochemical genetics and fishery management - An historical perspective. Journal of Fish Biology 39, 1-20.
39. Vos, P., Hogers, R., Bleeker, M., Reijans, M., Vandelee, T., Hornes, M., Frijters, A., Pot, J., Peleman, J., Kuiper, M. and Zabeau, M. (1995) AFLP - A new technique for DNA fingerprinting. Nucleic Acids Research 23, 4407-4414.
40. Waples, R. S. (1998) Separating the wheat from the chaff - Patterns of genetic differentiation in high gene flow species. Journal of Heredity 89, 438-450.
41. Ward, R. D. and Grewe, P. M. (1994) Appraisal of molecular-genetic techniques in fisheries. Reviews in Fish Biology and Fisheries 4, 300-325.
42. Ward, R. D., Woodwark, M. and Skibinski, D. O. F. (1994) A comparison of genetic diversity levels in marine, freshwater, and anadromous fishes. Journal of Fish Biology 44, 213-232.
43. Weber, J. L. (1990) Informativeness of human (dC-dA)n and (dG-dT)n polymorphisms. Genomics 7, 524-530.
44. Wilson, A. C., Cann, R. L., Carr, S. M., George, M., Gyllensten, U., Helm-Bychowski, K. M., Higuchi, G., Palumbi, S. R., Prager, E. M., Sage, R. D. and Stoneking, M. (1985) Mitochondrial DNA and two perspectives on evolutionary genetics. Biological Journal of the Linnaean Society 26, 375-400.
45. Wright, S. (1969) Evolution and the Genetics of Populations. Vol. 2. The Theory of Gene Frequencies. University of Chicago Press, Chicago, IL.