-
1
-
-
78650979311
-
Foodborne illness acquired in the United States-major pathogens
-
Scallan E, Hoekstra RM, Angulo FJ et al. Foodborne illness acquired in the United States-major pathogens. Emerg. Infect. Dis. 17(1), 7-15 (2011).
-
(2011)
Emerg. Infect. Dis.
, vol.17
, Issue.1
, pp. 7-15
-
-
Scallan, E.1
Hoekstra, R.M.2
Angulo, F.J.3
-
2
-
-
84947806942
-
-
CDC and Food Safety
-
CDC and Food Safety. http://www. cdc. gov
-
-
-
-
3
-
-
83055180142
-
Methodologies for Salmonella enterica subsp. Enterica subtyping: Gold standards and alternatives
-
Wattiau P, Boland C, Bertrand S. Methodologies for Salmonella enterica subsp. Enterica subtyping: gold standards and alternatives. Appl. Environ. Microbiol. 77(22), 7877-7885 (2011).
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, Issue.22
, pp. 7877-7885
-
-
Wattiau, P.1
Boland, C.2
Bertrand, S.3
-
4
-
-
72849144434
-
Sequencing technologies-The next generation
-
Metzker ML. Sequencing technologies-the next generation. Nat. Rev. Genet. 11(1), 31-46 (2010).
-
(2010)
Nat. Rev. Genet.
, vol.11
, Issue.1
, pp. 31-46
-
-
Metzker, M.L.1
-
5
-
-
84873809749
-
Integrating genome-based informatics to modernize global disease monitoring, information sharing, and response
-
Aarestrup FM, Brown EW, Detter C et al. Integrating genome-based informatics to modernize global disease monitoring, information sharing, and response. Emerg. Infect. Dis. 18(11), e1 (2012).
-
(2012)
Emerg. Infect. Dis.
, vol.18
, Issue.11
, pp. e1
-
-
Aarestrup, F.M.1
Brown, E.W.2
Detter, C.3
-
6
-
-
84866355562
-
Draft genome sequences of eight Salmonella enterica serotype Newport strains from diverse hosts and locations
-
Cao G, Zhao S, Strain E et al. Draft genome sequences of eight Salmonella enterica serotype Newport strains from diverse hosts and locations. J. Bacteriol. 194(18), 5146 (2012).
-
(2012)
J. Bacteriol.
, vol.194
, Issue.18
, pp. 5146
-
-
Cao, G.1
Zhao, S.2
Strain, E.3
-
7
-
-
84862792042
-
High resolution clustering of Salmonella enterica serovar Montevideo strains using a nextgeneration sequencing approach
-
Allard MW, Luo Y, Strain E et al. High resolution clustering of Salmonella enterica serovar Montevideo strains using a nextgeneration sequencing approach. BMC Genomics 13, 32 (2012).
-
(2012)
BMC Genomics
, vol.13
, pp. 32
-
-
Allard, M.W.1
Luo, Y.2
Strain, E.3
-
8
-
-
84873486628
-
On the evolutionary history, population genetics and diversity among isolates of Salmonella enteritidis PFGE pattern JEGX01
-
Allard MW, Luo Y, Strain E et al. On the evolutionary history, population genetics and diversity among isolates of Salmonella enteritidis PFGE pattern JEGX01. 0004. PLoS ONE 8(1), e55254 (2013).
-
(2013)
0004. PLoS ONE
, vol.8
, Issue.1
, pp. e55254
-
-
Allard, M.W.1
Luo, Y.2
Strain, E.3
-
9
-
-
84873727094
-
Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing
-
Cao G, Meng J, Strain E et al. Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing. PLoS ONE 8(2), e55687 (2013).
-
(2013)
PLoS ONE
, vol.8
, Issue.2
, pp. e55687
-
-
Cao, G.1
Meng, J.2
Strain, E.3
-
10
-
-
84868613754
-
Draft genome sequences of 21 Salmonella enterica serovar enteritidis strains
-
Timme RE, Allard MW, Luo Y et al. Draft genome sequences of 21 Salmonella enterica serovar enteritidis strains. J. Bacteriol. 194(21), 5994-5995 (2012).
-
(2012)
J. Bacteriol.
, vol.194
, Issue.21
, pp. 5994-5995
-
-
Timme, R.E.1
Allard, M.W.2
Luo, Y.3
-
11
-
-
84864003485
-
Genome sequences of five Salmonella enterica serovar heidelberg isolates associated with a 2011 multistate outbreak in the United States
-
Hoffmann M, Zhao S, Luo Y et al. Genome sequences of five Salmonella enterica serovar heidelberg isolates associated with a 2011 multistate outbreak in the United States. J. Bacteriol. 194(12), 3274-3275 (2012).
-
(2012)
J. Bacteriol.
, vol.194
, Issue.12
, pp. 3274-3275
-
-
Hoffmann, M.1
Zhao, S.2
Luo, Y.3
-
12
-
-
84929475544
-
Fully assembled genome sequence for Salmonella enterica subsp enterica serovar javiana CFSAN001992
-
Allard MW, Muruvanda T, Strain E et al. Fully assembled genome sequence for Salmonella enterica subsp. enterica serovar javiana CFSAN001992. Genome Announc. 1(2), e0008113 (2013).
-
(2013)
Genome Announc.
, vol.1
, Issue.2
, pp. e0008113
-
-
Allard, M.W.1
Muruvanda, T.2
Strain, E.3
-
13
-
-
84947805898
-
Whole-genome sequences of four Salmonella enterica serotype Newport strains from humans
-
Zhang J, Cao G, Xu X et al. Whole-genome sequences of four Salmonella enterica serotype Newport strains from humans. Genome Announc. 1(3), (2013).
-
(2013)
Genome Announc.
, vol.1
, Issue.3
-
-
Zhang, J.1
Cao, G.2
Xu, X.3
-
14
-
-
84997522763
-
Genome sequences of two emerging non-O157 Shiga toxin-producing Escherichia coli strains
-
Cao G, Ju W, Rump L et al. Genome sequences of two emerging non-O157 shiga toxin-producing escherichia coli strains. Genome Announc. 1(3), (2013).
-
(2013)
Genome Announc.
, vol.1
, Issue.3
-
-
Cao, G.1
Ju, W.2
Rump, L.3
-
15
-
-
84947805898
-
Draft genome sequences of three Salmonella enterica serotype agona strains from China
-
Zhang J, Cao G, Xu X et al. Draft genome sequences of three Salmonella enterica serotype agona strains from China. Genome Announc. 1(1), (2013).
-
(2013)
Genome Announc.
, vol.1
, Issue.1
-
-
Zhang, J.1
Cao, G.2
Xu, X.3
-
16
-
-
79953685152
-
The impact of next-generation sequencing on genomics
-
Zhang J, Chiodini R, Badr A, Zhang G. The impact of next-generation sequencing on genomics. J. Genet. Genomics 38(3), 95-109 (2011).
-
(2011)
J. Genet. Genomics
, vol.38
, Issue.3
, pp. 95-109
-
-
Zhang, J.1
Chiodini, R.2
Badr, A.3
Zhang, G.4
-
17
-
-
79951486830
-
Molecular determination of H antigens of Salmonella by use of a microsphere-based liquid array
-
Mcquiston JR, Waters RJ, Dinsmore BA, Mikoleit ML, Fields PI. Molecular determination of H antigens of Salmonella by use of a microsphere-based liquid array. J. Clin. Microbiol. 49(2), 565-573 (2011).
-
(2011)
J. Clin. Microbiol.
, vol.49
, Issue.2
, pp. 565-573
-
-
Mcquiston, J.R.1
Waters, R.J.2
Dinsmore, B.A.3
Mikoleit, M.L.4
Fields, P.I.5
-
20
-
-
74649084200
-
Supplement 2003-2007 (No. 47) to the White-Kauffmann-Le Minor scheme
-
Guibourdenche M, Roggentin P, Mikoleit M et al. Supplement 2003-2007 (No. 47) to the White-Kauffmann-Le Minor scheme. Res. Microbiol. 161(1), 26-29 (2010).
-
(2010)
Res. Microbiol.
, vol.161
, Issue.1
, pp. 26-29
-
-
Guibourdenche, M.1
Roggentin, P.2
Mikoleit, M.3
-
21
-
-
84864059917
-
Multilocus sequence typing as a replacement for serotyping in Salmonella enterica
-
Achtman M, Wain J, Weill FX et al. Multilocus sequence typing as a replacement for serotyping in Salmonella enterica . PLoS Pathog. 8(6), e1002776 (2012).
-
(2012)
PLoS Pathog.
, vol.8
, Issue.6
, pp. e1002776
-
-
Achtman, M.1
Wain, J.2
Weill, F.X.3
-
23
-
-
79952432498
-
Identification of a salmonellosis outbreak by means of molecular sequencing
-
Lienau EK, Strain E, Wang C et al. Identification of a salmonellosis outbreak by means of molecular sequencing. N. Engl. J. Med. 364(10), 981-982 (2011).
-
(2011)
N. Engl. J. Med.
, vol.364
, Issue.10
, pp. 981-982
-
-
Lienau, E.K.1
Strain, E.2
Wang, C.3
-
24
-
-
80052038815
-
Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica
-
Den Bakker HC, Moreno Switt AI, Govoni G et al. Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica. BMC Genomics 12 (2011).
-
(2011)
BMC Genomics
, vol.12
-
-
Den Bakker, H.C.1
Moreno Switt, A.I.2
Govoni, G.3
-
25
-
-
0034053725
-
A greedy algorithm for aligning DNA sequences
-
Zhang Z, Schwartz S, Wagner L, Miller W. A greedy algorithm for aligning DNA sequences. J. Comput. Biol. 7(1-2), 203-214 (2000).
-
(2000)
J. Comput. Biol.
, vol.7
, Issue.1-2
, pp. 203-214
-
-
Zhang, Z.1
Schwartz, S.2
Wagner, L.3
Miller, W.4
-
26
-
-
3042666256
-
Muscle: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. Muscle: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32(5), 1792-1797 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
27
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4(4), 406-425 (1987).
-
(1987)
Mol. Biol. Evol.
, vol.4
, Issue.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
28
-
-
79957613599
-
Mega5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. Mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28(10), 2731-2739 (2011).
-
(2011)
Mol. Biol. Evol.
, vol.28
, Issue.10
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
30
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39(4), 783-791 (1985).
-
(1985)
Evolution
, vol.39
, Issue.4
, pp. 783-791
-
-
Felsenstein, J.1
-
31
-
-
78649644200
-
Evolution and population structure of Salmonella enterica serovar Newport
-
Sangal V, Harbottle H, Mazzoni CJ et al. Evolution and population structure of Salmonella enterica serovar Newport. J. Bacteriol. 192(24), 6465-6476 (2010).
-
(2010)
J. Bacteriol.
, vol.192
, Issue.24
, pp. 6465-6476
-
-
Sangal, V.1
Harbottle, H.2
Mazzoni, C.J.3
-
32
-
-
2442596132
-
Sequencing and comparative analysis of flagellin genes flic, fljb, and flpa from Salmonella
-
Mcquiston JR, Parrenas R, Ortiz-Rivera M, Gheesling L, Brenner F, Fields PI. Sequencing and comparative analysis of flagellin genes flic, fljb, and flpa from Salmonella . J. Clin. Microbiol. 42(5), 1923-1932 (2004).
-
(2004)
J. Clin. Microbiol.
, vol.42
, Issue.5
, pp. 1923-1932
-
-
Mcquiston, J.R.1
Parrenas, R.2
Ortiz-Rivera, M.3
Gheesling, L.4
Brenner, F.5
Fields, P.I.6
-
33
-
-
0038204408
-
Phylogeny for the faint of heart: A tutorial
-
Baldauf SL. Phylogeny for the faint of heart: a tutorial. Trends Genet. 19(6), 345-351 (2003).
-
(2003)
Trends Genet.
, vol.19
, Issue.6
, pp. 345-351
-
-
Baldauf, S.L.1
-
34
-
-
67849130481
-
DNA microarray for molecular epidemiology of Salmonella
-
Huehn S, Malorny B. DNA microarray for molecular epidemiology of Salmonella . Methods Mol. Biol. 551, 249-285 (2009).
-
(2009)
Methods Mol. Biol.
, vol.551
, pp. 249-285
-
-
Huehn, S.1
Malorny, B.2
-
35
-
-
33845233656
-
Molecular characterisation of Salmonella strains by an oligonucleotide multiprobe microarray
-
Malorny B, Bunge C, Guerra B, Prietz S, Helmuth R. Molecular characterisation of Salmonella strains by an oligonucleotide multiprobe microarray. Mol. Cell. Probes 21(1), 56-65 (2007).
-
(2007)
Mol. Cell. Probes
, vol.21
, Issue.1
, pp. 56-65
-
-
Malorny, B.1
Bunge, C.2
Guerra, B.3
Prietz, S.4
Helmuth, R.5
-
36
-
-
0032698478
-
The bacterial flagellum: Reversible rotary propellor and type III export apparatus
-
Macnab RM. The bacterial flagellum: reversible rotary propellor and type III export apparatus. J. Bacteriol. 181(23), 7149-7153 (1999).
-
(1999)
J. Bacteriol.
, vol.181
, Issue.23
, pp. 7149-7153
-
-
Macnab, R.M.1
|