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Volumn 31, Issue 22, 2015, Pages 3703-3705

BackCLIP: A tool to identify common background presence in PAR-CLIP datasets

Author keywords

[No Author keywords available]

Indexed keywords

CROSS LINKING REAGENT; RNA BINDING PROTEIN;

EID: 84947710308     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv442     Document Type: Article
Times cited : (8)

References (11)
  • 1
    • 84923917411 scopus 로고    scopus 로고
    • Sensitive and highly resolved identification of RNA-protein interaction sites in par-clip data
    • Comoglio,F. et al. (2015) Sensitive and highly resolved identification of RNA-protein interaction sites in par-clip data. BMC Bioinformatics, 16.
    • (2015) BMC Bioinformatics , vol.16
    • Comoglio, F.1
  • 2
    • 83355177243 scopus 로고    scopus 로고
    • Pybedtools: A flexible python library for manipulating genomic datasets and annotations
    • Dale,R.K. et al. (2011) Pybedtools: a flexible python library for manipulating genomic datasets and annotations. Bioinformatics, 27, 3423-3424.
    • (2011) Bioinformatics , vol.27 , pp. 3423-3424
    • Dale, R.K.1
  • 3
    • 84891687767 scopus 로고    scopus 로고
    • Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs
    • Friedersdorf,M. B. and Keene,J. D. (2014) Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs. Genome Biol., 15,R2.
    • (2014) Genome Biol. , vol.15 , pp. R2
    • Friedersdorf, M.B.1    Keene, J.D.2
  • 4
    • 77950920903 scopus 로고    scopus 로고
    • Transcriptome-wide identification of RNA-binding protein and microrna target sites by PAR-CLIP
    • Hafner,M. et al. (2010) Transcriptome-wide identification of RNA-binding protein and microrna target sites by PAR-CLIP. Cell, 141, 129-141.
    • (2010) Cell , vol.141 , pp. 129-141
    • Hafner, M.1
  • 5
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead,B. et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol, 10, R25.
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1
  • 6
    • 56549105330 scopus 로고    scopus 로고
    • HITS-CLIP yields genome-wide insights into brain alternative RNA processing
    • Licatalosi,D.D. et al. (2008) HITS-CLIP yields genome-wide insights into brain alternative RNA processing. Nature, 456, 46-49.
    • (2008) Nature , vol.456 , pp. 46-49
    • Licatalosi, D.D.1
  • 7
    • 84907621516 scopus 로고    scopus 로고
    • Computational methods for CLIP-seq data processing
    • Reyes-Herrera,P.H. and Ficarra,E. (2014) Computational methods for CLIP-seq data processing. Bioinform. Biol. Insights, 8, 199-207.
    • (2014) Bioinform. Biol. Insights , vol.8 , pp. 199-207
    • Reyes-Herrera, P.H.1    Ficarra, E.2
  • 8
    • 84869071915 scopus 로고    scopus 로고
    • Mixture models and wavelet transforms reveal high confidence RNA-protein interaction sites in MOV10 PAR-CLIP data
    • Sievers,C. et al. (2012) Mixture models and wavelet transforms reveal high confidence RNA-protein interaction sites in MOV10 PAR-CLIP data. Nucleic Acids Res., 40, e160.
    • (2012) Nucleic Acids Res. , vol.40 , pp. e160
    • Sievers, C.1
  • 9
    • 65449136284 scopus 로고    scopus 로고
    • Tophat: Discovering splice junctions with RNA-seq
    • Trapnell,C. et al. (2009) Tophat: discovering splice junctions with RNA-seq. Bioinformatics, 25, 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1
  • 10
    • 84870471564 scopus 로고    scopus 로고
    • Site identification in high-throughput RNA-protein interaction data
    • Uren,P. et al. (2012) Site identification in high-throughput RNA-protein interaction data. Bioinformatics, 28, 301-320.
    • (2012) Bioinformatics , vol.28 , pp. 301-320
    • Uren, P.1
  • 11
    • 84899497034 scopus 로고    scopus 로고
    • A model-based approach to identify binding sites in clip-seq data
    • Wang,T. et al. (2014) A model-based approach to identify binding sites in clip-seq data. PLoS One, 9, e93248.
    • (2014) PLoS One , vol.9
    • Wang, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.