-
1
-
-
75149196287
-
The mechanism of eukaryotic translation initiation and principles of its regulation
-
Jackson, R.J., Hellen, C.U.T. and Pestova, T.V. (2010) The mechanism of eukaryotic translation initiation and principles of its regulation. Nat. Rev. Mol. Cell Bio., 11, 113-127.
-
(2010)
Nat. Rev. Mol. Cell Bio.
, vol.11
, pp. 113-127
-
-
Jackson, R.J.1
Hellen, C.U.T.2
Pestova, T.V.3
-
2
-
-
18344364099
-
Understanding alternative splicing: Towards a cellular code
-
Matlin, A.J., Clark, F. and Smith, C.W.J. (2005) Understanding alternative splicing: towards a cellular code. Nat. Rev. Mol. Cell Bio., 6, 386-398.
-
(2005)
Nat. Rev. Mol. Cell Bio.
, vol.6
, pp. 386-398
-
-
Matlin, A.J.1
Clark, F.2
Smith, C.W.J.3
-
3
-
-
58449134534
-
Small silencing RNAs: An expanding universe
-
Ghildiyal, M. and Zamore, P.D. (2009) Small silencing RNAs: an expanding universe. Nat. Rev. Genet., 10, 94-108.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
4
-
-
84855916545
-
Protein-RNA interactions: New genomic technologies and perspectives
-
Konig, J., Zarnack, K., Luscombe, N.M. and Ule, J. (2012) Protein-RNA interactions: new genomic technologies and perspectives. Nat. Rev. Genet., 13, 77-83.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 77-83
-
-
Konig, J.1
Zarnack, K.2
Luscombe, N.M.3
Ule, J.4
-
5
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
Wang, K.C. and Chang, H.Y. (2011) Molecular mechanisms of long noncoding RNAs. Cell, 43, 904-914.
-
(2011)
Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
6
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner, M., Landthaler, M., Burger, L., Khorshid, M., Hausser, J., Berninger, P., Rothballer, A., Ascano, M., Jungkamp, A., Munschauer, M. et al. (2010) Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell, 141, 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
Rothballer, A.7
Ascano, M.8
Jungkamp, A.9
Munschauer, M.10
-
7
-
-
78649901946
-
Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies
-
Zagordi, O., Klein, R., DLumer, M. and Beerenwinkel, N. (2010) Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies. Nucleic Acids Res., 38, 7400-7409.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 7400-7409
-
-
Zagordi, O.1
Klein, R.2
Dlumer, M.3
Beerenwinkel, N.4
-
8
-
-
78651271270
-
CLIPZ: A database and analysis environment for experimentally determined binding sites of RNA-binding proteins
-
Khorshid, M., Rodak, C. and Zavolan, M. (2011) CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins. Nucleic Acids Res., 39, D245-D252.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Khorshid, M.1
Rodak, C.2
Zavolan, M.3
-
9
-
-
79960929333
-
Transcriptome-wide analysis of regulatory interactions of the RNA-binding protein HuR
-
Lebedeva, S., Jens, M., Theil, K., Schwanhäusser, B., Selbach, M., Landthaler, M. and Rajewsky, N. (2011) Transcriptome-wide analysis of regulatory interactions of the RNA-binding protein HuR. Mol. Cell, 43, 340-352.
-
(2011)
Mol. Cell
, vol.43
, pp. 340-352
-
-
Lebedeva, S.1
Jens, M.2
Theil, K.3
Schwanhäusser, B.4
Selbach, M.5
Landthaler, M.6
Rajewsky, N.7
-
10
-
-
34249282938
-
MicroRNA silencing through RISC recruitment of eIF6
-
Chendrimada, T.P., Finn, K.J., Ji, X., Baillat, D., Gregory, R.I., Liebhaber, S.A., Pasquinelli, A.E. and Shiekhattar, R. (2007) MicroRNA silencing through RISC recruitment of eIF6. Nature, 447, 823-828.
-
(2007)
Nature
, vol.447
, pp. 823-828
-
-
Chendrimada, T.P.1
Finn, K.J.2
Ji, X.3
Baillat, D.4
Gregory, R.I.5
Liebhaber, S.A.6
Pasquinelli, A.E.7
Shiekhattar, R.8
-
11
-
-
33750030758
-
The regulation of INK4/ ARF in cancer and aging
-
Kim, W.Y. and Sharpless, N.E. (2006) The regulation of INK4/ ARF in cancer and aging. Cell, 127, 265-272.
-
(2006)
Cell
, vol.127
, pp. 265-272
-
-
Kim, W.Y.1
Sharpless, N.E.2
-
12
-
-
77953096072
-
Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by Polycomb CBX7 in transcriptional silencing of INK4a
-
Yap, K.L., Li, S., Muoz-Cabello, A.M., Raguz, S., Zeng, L., Mujtaba, S., Gil, J., Walsh, M.J. and Zhou, M. (2010) Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by Polycomb CBX7 in transcriptional silencing of INK4a. Mol. Cell, 38, 662-674.
-
(2010)
Mol. Cell
, vol.38
, pp. 662-674
-
-
Yap, K.L.1
Li, S.2
Muoz-Cabello, A.M.3
Raguz, S.4
Zeng, L.5
Mujtaba, S.6
Gil, J.7
Walsh, M.J.8
Zhou, M.9
-
13
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. and Salzberg, S.L. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol, 10, R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
14
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G. and Durbin, R. (2009) The sequence alignment/map format and SAMtools. Bioinformatics, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
15
-
-
80051786284
-
PARalyzer: Definition of RNA binding sites from PAR-CLIP short-read sequence data
-
Corcoran, D.L., Georgiev, S., Mukherjee, N., Gottwein, E., Skalsky, R.L., Keene, J.D. and Ohler, U. (2011) PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data. Genome Biol., 12, R79.
-
(2011)
Genome Biol.
, vol.12
-
-
Corcoran, D.L.1
Georgiev, S.2
Mukherjee, N.3
Gottwein, E.4
Skalsky, R.L.5
Keene, J.D.6
Ohler, U.7
-
16
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey, T.C. and Elkan, C. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Inte. Conf. Intel. Syst. Mol. Biol, 2, 28-36.
-
(1994)
Proc. Inte. Conf. Intel. Syst. Mol. Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.C.1
Elkan, C.2
-
17
-
-
79961135005
-
-
R Development Core Team, R Foundation for Statistical Computing, Vienna, Austria.
-
R Development Core Team (2011) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
-
(2011)
R: A Language and Environment for Statistical Computing
-
-
-
18
-
-
44149126227
-
A multifunctional human Argonaute2-specific monoclonal antibody
-
Ruedel, S., Flatley, A., Weinmann, L., Kremmer, E. and Meister, G. (2008) A multifunctional human Argonaute2-specific monoclonal antibody. RNA, 14, 1244-1253.
-
(2008)
RNA
, vol.14
, pp. 1244-1253
-
-
Ruedel, S.1
Flatley, A.2
Weinmann, L.3
Kremmer, E.4
Meister, G.5
-
20
-
-
0037246661
-
Wavelets in bioinformatics and computational biology: State of art and perspectives
-
Li, P. (2003) Wavelets in bioinformatics and computational biology: state of art and perspectives. Bioinformatics, 19, 2-9.
-
(2003)
Bioinformatics
, vol.19
, pp. 2-9
-
-
Li, P.1
-
21
-
-
33748659203
-
Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching
-
Du, P., Kibbe, W.A. and Lin, S.M. (2011) Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching. Bioinformatics, 22, 2059-2065.
-
(2011)
Bioinformatics
, vol.22
, pp. 2059-2065
-
-
Du, P.1
Kibbe, W.A.2
Lin, S.M.3
-
22
-
-
79959813870
-
A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins
-
Kishore, S., Jaskiewicz, L., Burger, L., Hausser, J., Khorshid, M. and Zavolan, M. (2011) A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins. Nat Methods, 8, 559-564.
-
(2011)
Nat Methods
, vol.8
, pp. 559-564
-
-
Kishore, S.1
Jaskiewicz, L.2
Burger, L.3
Hausser, J.4
Khorshid, M.5
Zavolan, M.6
-
23
-
-
84964203940
-
Bootstrap methods for standard errors, confidence intervals, and other measures of statistical accuracy
-
Efron, B. and Tibshirani, R. (1986) Bootstrap methods for standard errors, confidence intervals, and other measures of statistical accuracy. Stat. Sci., 1, 54-75.
-
(1986)
Stat. Sci.
, vol.1
, pp. 54-75
-
-
Efron, B.1
Tibshirani, R.2
-
24
-
-
67849116900
-
MirZ: An integrated microRNA expression atlas and target prediction resource
-
Hausser, J., Berninger, P., Rodak, C., Jantscher, Y., Wirth, S. and Zavolan, M. (2009) MirZ: an integrated microRNA expression atlas and target prediction resource. Nucleic Acids Res., 37, W266-W272.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Hausser, J.1
Berninger, P.2
Rodak, C.3
Jantscher, Y.4
Wirth, S.5
Zavolan, M.6
-
25
-
-
84355163093
-
DNA-binding factors shape the mouse methylome at distal regulatory regions
-
Stadler, M.B., Murr, R., Burger, L., Ivanek, R., Lienert, F., Schler, A., Wirbelauer, C., Oakeley, E.J., Gaidatzis, D., Tiwari, V.K. et al. (2011) DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature, 480, 490-495.
-
(2011)
Nature
, vol.480
, pp. 490-495
-
-
Stadler, M.B.1
Murr, R.2
Burger, L.3
Ivanek, R.4
Lienert, F.5
Schler, A.6
Wirbelauer, C.7
Oakeley, E.J.8
Gaidatzis, D.9
Tiwari, V.K.10
-
27
-
-
0003684449
-
-
Springer, NY, USA.
-
Hastie, T., Tibshirani, R. and Friedman, J. (2007) The Elements of Statistical Learning. Springer, NY, USA
-
(2007)
The Elements of Statistical Learning
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.3
-
28
-
-
33644750115
-
MiRBase: MicroRNA sequences, targets and gene nomenclature
-
Griffiths-Jones, S., Grocock, R.J., van Dongen, S., Bateman, A. and Enright, A.J. (2006) miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res., 34, D140-D144.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
Van Dongen, S.3
Bateman, A.4
Enright, A.J.5
|