Individual members of the microbiota disproportionately modulate host innate immune responses

Cell Host and Microbe

Volumn 18, Issue 5, 2015, Pages 613-620

  Rolig, Annah S ^a   Parthasarathy, Raghuveer ^a   Burns, Adam R ^a   Bohannan, Brendan J M ^a   Guillemin, Karen ^a  

^a UNIVERSITY OF OREGON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM ISOLATE; GNOTOBIOTICS; IMMUNE RESPONSE; IMMUNOMODULATION; INNATE IMMUNITY; MATHEMATICAL MODEL; MICROBIAL COMMUNITY; MICROFLORA; NONHUMAN; PRIORITY JOURNAL; ZEBRA FISH; AEROMONAS; ANIMAL; ANIMAL MODEL; BIOLOGICAL MODEL; GERMFREE ANIMAL; IMMUNIZATION; IMMUNOLOGY; MICROBIOLOGY; NEUTROPHIL; SHEWANELLA; SYMBIOSIS; VIBRIO;

AEROMONAS; ANIMALS; GERM-FREE LIFE; IMMUNIZATION; MICROBIOTA; MODELS, ANIMAL; MODELS, BIOLOGICAL; NEUTROPHILS; SHEWANELLA; SYMBIOSIS; VIBRIO; ZEBRAFISH;

EID: 84947429955     PISSN: 19313128     EISSN: 19346069     Source Type: Journal    
DOI: 10.1016/j.chom.2015.10.009     Document Type: Article

References (33)

1. M. Arumugam, J. Raes, E. Pelletier, D. Le Paslier, T. Yamada, D.R. Mende, G.R. Fernandes, J. Tap, T. Bruls, J.-M. Batto, et al. MetaHIT Consortium Enterotypes of the human gut microbiome Nature 473 2011 174 180
2. F. Bäckhed, R.E. Ley, J.L. Sonnenburg, D.A. Peterson, and J.I. Gordon Host-bacterial mutualism in the human intestine Science 307 2005 1915 1920
3. J.M. Bates, E. Mittge, J. Kuhlman, K.N. Baden, S.E. Cheesman, and K. Guillemin Distinct signals from the microbiota promote different aspects of zebrafish gut differentiation Dev. Biol. 297 2006 374 386
4. J.M. Bates, J. Akerlund, E. Mittge, and K. Guillemin Intestinal alkaline phosphatase detoxifies lipopolysaccharide and prevents inflammation in zebrafish in response to the gut microbiota Cell Host Microbe 2 2007 371 382
5. Y. Cao, J. Shen, and Z.H. Ran Association between Faecalibacterium prausnitzii reduction and inflammatory bowel disease: A meta-analysis and systematic review of the literature Gastroenterol. Res. Pract. 2014 2014 10.1155/2014/872725
6. C.K. Fisher, and P. Mehta Identifying keystone species in the human gut microbiome from metagenomic timeseries using sparse linear regression PLoS ONE 9 2014 e102451
7. D.N. Frank, A.L. St Amand, R.A. Feldman, E.C. Boedeker, N. Harpaz, and N.R. Pace Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases Proc. Natl. Acad. Sci. USA 104 2007 13780 13785
8. G. Hajishengallis, R.P. Darveau, and M.A. Curtis The keystone-pathogen hypothesis Nat. Rev. Microbiol. 10 2012 717 725
9. E.A. Harvie, and A. Huttenlocher Neutrophils in host defense: new insights from zebrafish J. Leukoc. Biol. 98 2015 523 537
10. L.V. Hooper, D.R. Littman, and A.J. Macpherson Interactions between the microbiota and the immune system Science 336 2012 1268 1273
11. M. Jemielita, M.J. Taormina, A.R. Burns, J.S. Hampton, A.S. Rolig, K. Guillemin, and R. Parthasarathy Spatial and temporal features of the growth of a bacterial species colonizing the zebrafish gut MBio 5 2014 1 8
12. R. Jumpertz, D.S. Le, P.J. Turnbaugh, C. Trinidad, C. Bogardus, J.I. Gordon, and J. Krakoff Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans Am. J. Clin. Nutr. 94 2011 58 65
13. M. Kanther, S. Tomkovich, S. Xiaolun, M.R. Grosser, J. Koo, E.J. Flynn III, C. Jobin, and J.F. Rawls Commensal microbiota stimulate systemic neutrophil migration through induction of serum amyloid A Cell. Microbiol. 16 2014 1053 1067
14. D.L. MacIntyre, S.T. Miyata, M. Kitaoka, and S. Pukatzki The Vibrio cholerae type VI secretion system displays antimicrobial properties Proc. Natl. Acad. Sci. USA 107 2010 19520 19524
15. S. Marino, N.T. Baxter, G.B. Huffnagle, J.F. Petrosino, and P.D. Schloss Mathematical modeling of primary succession of murine intestinal microbiota Proc. Natl. Acad. Sci. USA 111 2013 439 444
16. G. Mastropietro, I. Tiscornia, K. Perelmuter, S. Astrada, and M. Bollati-fogolín HT-29 and Caco-2 reporter cell lines for functional studies of nuclear factor kappa B activation Mediat. Inflamm. 2015 10.1155/2015/860534
17. S.K. Mazmanian, J.L. Round, and D.L. Kasper A microbial symbiosis factor prevents intestinal inflammatory disease Nature 453 2008 620 625
18. K. Milligan-Myhre, J.R. Charette, R.T. Phennicie, W.Z. Stephens, J.F. Rawls, K. Guillemin, and C.H. Kim Study of Host-Microbe Interactions in Zebrafish 2011 Elsevier Inc.
19. P.D. Newell, and A.E. Douglas Interspecies interactions determine the impact of the gut microbiota on nutrient allocation in Drosophila melanogaster Appl. Environ. Microbiol. 80 2014 788 796
20. S.H. Oehlers, M.V. Flores, K.S. Okuda, C.J. Hall, K.E. Crosier, and P.S. Crosier A chemical enterocolitis model in zebrafish larvae that is dependent on microbiota and responsive to pharmacological agents Dev. Dyn. 240 2011 288 298
21. M.E. Power, D. Tilman, J.A. Estes, B.A. Menge, W.J. Bond, S. Mills, G. Daily, J.C. Castilla, J. Lubchenco, and R.T. Paine Challenges Quest for Keystones Bioscience 46 1996 609 620
22. S.A. Renshaw, C.A. Loynes, D.M.I. Trushell, S. Elworthy, P.W. Ingham, and M.K.B. Whyte A transgenic zebrafish model of neutrophilic inflammation Blood 108 2006 3976 3978
23. H. Sokol, B. Pigneur, L. Watterlot, O. Lakhdari, L.G. Bermúdez-Humarán, J.-J. Gratadoux, S. Blugeon, C. Bridonneau, J.-P. Furet, G. Corthier, and et al. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients Proc. Natl. Acad. Sci. USA 105 2008 16731 16736
24. H. Sokol, P. Seksik, J.P. Furet, O. Firmesse, I. Nion-Larmurier, L. Beaugerie, J. Cosnes, G. Corthier, P. Marteau, and J. Doré Low counts of Faecalibacterium prausnitzii in colitis microbiota Inflamm. Bowel Dis. 15 2009 1183 1189
25. J.L. Sonnenburg, C.T.L. Chen, and J.I. Gordon Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host PLoS Biol. 4 2006 e413
26. R.R. Stein, V. Bucci, N.C. Toussaint, C.G. Buffie, G. Rätsch, E.G. Pamer, C. Sander, and J.B. Xavier Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota PLoS Comput. Biol. 9 2013 e1003388
27. W.Z. Stephens, A.R. Burns, K. Stagaman, S. Wong, J.F. Rawls, K. Guillemin, and B.J. Bohannan The composition of the zebrafish intestinal microbial community varies across development ISME J. 2015 10.1038/ismej.2015.140
28. S.T. Tapia-Paniagua, S. Vidal, C. Lobo, M.J. Prieto-Álamo, J. Jurado, H. Cordero, R. Cerezuela, I. García de la Banda, M.A. Esteban, M.C. Balebona, and M.A. Moriñigo The treatment with the probiotic Shewanella putrefaciens Pdp11 of specimens of Solea senegalensis exposed to high stocking densities to enhance their resistance to disease Fish Shellfish Immunol. 41 2014 209 221
29. P.J. Turnbaugh, M. Hamady, T. Yatsunenko, B.L. Cantarel, A. Duncan, R.E. Ley, M.L. Sogin, W.J. Jones, B.A. Roe, J.P. Affourtit, and et al. A core gut microbiome in obese and lean twins Nature 457 2009 480 484
30. W.A. Walters, Z. Xu, and R. Knight Meta-analyses of human gut microbes associated with obesity and IBD FEBS Lett. 588 2014 4223 4233
31. L. Wen, R.E. Ley, P.Y. Volchkov, P.B. Stranges, L. Avanesyan, A.C. Stonebraker, C. Hu, F.S. Wong, G.L. Szot, J.A. Bluestone, and et al. Innate immunity and intestinal microbiota in the development of Type 1 diabetes Nature 455 2008 1109 1113
32. M. Westerfield The Zebrafish Book: A Guide for the Laboratory Use of Zebrafish Danio (Brachydanio rerio) 1993 Institute of Neuroscience University of Oregon
33. S.E. Winter, P. Thiennimitr, M.G. Winter, B.P. Butler, D.L. Huseby, R.W. Crawford, J.M. Russell, C.L. Bevins, L.G. Adams, R.M. Tsolis, and et al. Gut inflammation provides a respiratory electron acceptor for Salmonella Nature 467 2010 426 429