Hierarchical-Multiplex DNA Patterns Mediated by Polymer Brush Nanocone Arrays That Possess Potential Application for Specific DNA Sensing

ACS Applied Materials and Interfaces

Volumn 7, Issue 44, 2015, Pages 24760-24771

  Liu, Wendong ^a   Liu, Xueyao ^a   Ge, Peng ^a   Fang, Liping ^a   Xiang, Siyuan ^a   Zhao, Xiaohuan ^a   Shen, Huaizhong ^a   Yang, Bai ^a  

^a Jilin University   (China)

Author keywords

DNA patterns; hierarchical multiplex; nanocone arrays; polymer brush; sensing

Indexed keywords

DENDRIMERS; MULTIPLEXING; NANOSTRUCTURES; PHEMA; PHOTOLITHOGRAPHY; POLYMERS;

COLLOIDAL LITHOGRAPHY; DNA PATTERNS; HIERARCHICAL STRUCTURES; NANOCONE ARRAYS; POLY(2-HYDROXYETHYL METHACRYLATE); POLYMER BRUSHES; SENSING; SINGLE STRAND DNA (SS-DNA);

DNA;

COLLOID; DNA; MACROMOLECULE; NANOPARTICLE; POLYMACON; POLYMER; SILICON; SINGLE STRANDED DNA;

ATOMIC FORCE MICROSCOPY; CHEMISTRY; COLLOID; DNA MICROARRAY; FLUORESCENCE MICROSCOPY; GENETIC PROCEDURES; MACROMOLECULE; MICROFLUIDICS; PROCEDURES; SCANNING ELECTRON MICROSCOPY; SURFACE PROPERTY;

BIOSENSING TECHNIQUES; COLLOIDS; DNA; DNA, SINGLE-STRANDED; MACROMOLECULAR SUBSTANCES; MICROFLUIDICS; MICROSCOPY, ATOMIC FORCE; MICROSCOPY, ELECTRON, SCANNING; MICROSCOPY, FLUORESCENCE; NANOPARTICLES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYHYDROXYETHYL METHACRYLATE; POLYMERS; SILICON; SURFACE PROPERTIES;

EID: 84947087447     PISSN: 19448244     EISSN: 19448252     Source Type: Journal    
DOI: 10.1021/acsami.5b07577     Document Type: Article

References (45)

1. Wu, L.; Xiong, E.; Zhang, X.; Zhang, X.; Chen, J. Nanomaterials as Signal Amplification Elements in DNA-Based Electrochemical Sensing Nano Today 2014, 9, 197-211 10.1016/j.nantod.2014.04.002
2. Tjong, V.; Tang, L.; Zauscher, S.; Chilkoti, A. Smart DNA Interfaces Chem. Soc. Rev. 2014, 43, 1612-1626 10.1039/C3CS60331H
3. Kwon, Y.-W.; Lee, C. H.; Choi, D.-H.; Jin, J.-I. Materials Science of DNA J. Mater. Chem. 2009, 19, 1353-1380 10.1039/B808030E
4. Pu, F.; Ren, J.; Qu, X. Nucleic Acids and Smart Materials: Advanced Building Blocks for Logic Systems Adv. Mater. 2014, 26, 5742-5757 10.1002/adma.201401617
5. Zadegan, R. M.; Jepsen, M. D.; Hildebrandt, L. L.; Birkedal, V.; Kjems, J. Construction of a Fuzzy and Boolean Logic Gates Based on DNA Small 2015, 11, 1811-1817 10.1002/smll.201402755
6. Soleymani, L.; Fang, Z.; Sun, X.; Yang, H.; Taft, B. J.; Sargent, E. H.; Kelley, S. O. Nanostructuring of Patterned Microelectrodes to Enhance the Sensitivity of Electrochemical Nucleic Acids Detection Angew. Chem., Int. Ed. 2009, 48, 8457-8460 10.1002/anie.200902439
7. Ferapontova, E. E.; Hansen, M. N.; Saunders, A. M.; Shipovskov, S.; Sutherland, D. S.; Gothelf, K. V. Electrochemical DNA Sandwich Assay with a Lipase Label for Attomole Detection of DNA Chem. Commun. 2010, 46, 1836-1838 10.1039/b924627d
8. Khan, H. U.; Roberts, M. E.; Johnson, O.; Forch, R.; Knoll, W.; Bao, Z. In Situ, Label-Free DNA Detection Using Organic Transistor Sensors Adv. Mater. 2010, 22, 4452-4456 10.1002/adma.201000790
9. Lu, J.; Ge, S.; Ge, L.; Yan, M.; Yu, J. Electrochemical DNA Sensor Based on Three-Dimensional Folding Paper Device for Specific and Sensitive Point-of-Care Testing Electrochim. Acta 2012, 80, 334-341 10.1016/j.electacta.2012.07.024
10. Star, A.; Tu, E.; Niemann, J.; Gabriel, J. C.; Joiner, C. S.; Valcke, C. Label-Free Detection of DNA Hybridization Using Carbon Nanotube Network Field-Effect Transistors Proc. Natl. Acad. Sci. U. S. A. 2006, 103, 921-926 10.1073/pnas.0504146103
11. Gao, A.; Lu, N.; Dai, P.; Li, T.; Pei, H.; Gao, X.; Gong, Y.; Wang, Y.; Fan, C. Silicon-Nanowire-Based CMOS-Compatible Field-Effect Transistor Nanosensors for Ultrasensitive Electrical Detection of Nucleic Acids Nano Lett. 2011, 11, 3974-3978 10.1021/nl202303y
12. Kergoat, L.; Piro, B.; Berggren, M.; Pham, M.-C.; Yassar, A.; Horowitz, G. DNA Detection with a Water-Gated Organic Field-Effect Transistor Org. Electron. 2012, 13, 1-6 10.1016/j.orgel.2011.09.025
13. Kang, T.; Yoo, S. M.; Yoon, I.; Lee, S. Y.; Kim, B. Patterned Multiplex Pathogen DNA Detection by Au Particle-on-Wire SERS Sensor Nano Lett. 2010, 10, 1189-1193 10.1021/nl1000086
14. He, Y.; Su, S.; Xu, T.; Zhong, Y.; Zapien, J. A.; Li, J.; Fan, C.; Lee, S.-T. Silicon Nanowires-Based Highly-Efficient SERS-Active Platform for Ultrasensitive DNA Detection Nano Today 2011, 6, 122-130 10.1016/j.nantod.2011.02.004
15. Peng, H.; Strohsahl, C. M.; Leach, K. E.; Krauss, T. D.; Miller, B. L. Label-Free DNA Detection on Nanostructured Ag Surfaces ACS Nano 2009, 3, 2265-2273 10.1021/nn900112e
16. Gao, Q.; Zhang, W.; Guo, Y.; Qi, H.; Zhang, C. Highly Sensitive Impedimetric Sensing of DNA Hybridization Based on The Target DNA-Induced Displacement of Gold Nanoparticles Attached to ssDNA Probe Electrochem. Commun. 2011, 13, 335-337 10.1016/j.elecom.2011.01.018
17. Li, M.; He, F.; Liao, Q.; Liu, J.; Xu, L.; Jiang, L.; Song, Y.; Wang, S.; Zhu, D. Ultrasensitive DNA Detection Using Photonic Crystals Angew. Chem., Int. Ed. 2008, 47, 7258-7262 10.1002/anie.200801998
18. Borisov, S. M.; Wolfbeis, O. S. Optical Biosensors Chem. Rev. 2008, 108, 423-461 10.1021/cr068105t
19. Zhao, Y.; Zhao, X.; Tang, B.; Xu, W.; Li, J.; Hu, J.; Gu, Z. Quantum-Dot-Tagged Bioresponsive Hydrogel Suspension Array for Multiplex Label-Free DNA Detection Adv. Funct. Mater. 2010, 20, 976-982 10.1002/adfm.200901812
20. Chen, J.-K.; Zhou, G.-Y.; Chang, C.-J.; Lee, A.-W.; Chang, F.-C. Two-Dimensional Periodic Relief Gratings as a Versatile Platform for Label-Free Specific DNA Detection Adv. Mater. Interfaces 2014, 1, 1300074 10.1002/admi.201300074
21. Zhao, W. W.; Xu, J. J.; Chen, H. Y. Photoelectrochemical DNA Biosensors Chem. Rev. 2014, 114, 7421-7441 10.1021/cr500100j
22. Zheng, W.; He, L. Label-Free, Real-Time Multiplexed DNA Detection Using Fluorescent Conjugated Polymers J. Am. Chem. Soc. 2009, 131, 3432-3433 10.1021/ja809175q
23. Wang, C.; Zhan, R.; Pu, K.-Y.; Liu, B. Cationic Polyelectrolyte Amplified Bead Array for DNA Detection with Zeptomole Sensitivity and Single Nucleotide Polymorphism Selectivity Adv. Funct. Mater. 2010, 20, 2597-2604 10.1002/adfm.201000459
24. Luo, Y.; Liao, F.; Lu, W.; Chang, G.; Sun, X. Coordination Polymer Nanobelts for Nucleic Acid Detection Nanotechnology 2011, 22, 195502 10.1088/0957-4484/22/19/195502
25. Bailey, R. C.; Nam, J.-M.; Mirkin, C. A.; Hupp, J. T. Real-Time Multicolor DNA Detection with Chemoresponsive Diffraction Gratings and Nanoparticle Probes J. Am. Chem. Soc. 2003, 125, 13541-13547 10.1021/ja035479k
26. Yin, H. B.; Brown, T.; Wilkinson, J. S.; Eason, R. W.; Melvin, T. Submicron Patterning of DNA Oligonucleotides on Silicon Nucleic Acids Res. 2004, 32, e118 10.1093/nar/gnh113
27. Sakurai, K.; Teramura, Y.; Iwata, H. Cells Immobilized on Patterns Printed in DNA by an Inkjet Printer Biomaterials 2011, 32, 3596-3602 10.1016/j.biomaterials.2011.01.066
28. Scheible, M. B.; Pardatscher, G.; Kuzyk, A.; Simmel, F. C. Single Molecule Characterization of DNA Binding and Strand Displacement Reactions on Lithographic DNA Origami Microarrays Nano Lett. 2014, 14, 1627-1633 10.1021/nl500092j
29. Zhang, H.; Li, Z.; Mirkin, C. A. Dip-Pen Nanolithography-Based Methodology for Preparing Arrays of Nanostructures Functionalized with Oligonucleotides Adv. Mater. 2002, 14, 1472-1474 10.1002/1521-4095(20021016)14:20<1472::AID-ADMA1472>3.0.CO;2-E
30. Hyun, J.; Kim, J.; Craig, S. L.; Chilkoti, A. Enzymatic Nanolithography of a Self-Assembled Oligonucleotide Monolayer on Gold J. Am. Chem. Soc. 2004, 126, 4770-4771 10.1021/ja049956q
31. Hoff, J. D.; Cheng, L.-J.; Meyhöfer, E.; Guo, L. J.; Hunt, A. J. Nanoscale Protein Patterning by Imprint Lithography Nano Lett. 2004, 4, 853-857 10.1021/nl049758x
32. Maury, P.; Escalante, M.; Peter, M.; Reinhoudt, D. N.; Subramaniam, V.; Huskens, J. Creating Nanopatterns of His-Tagged Proteins on Surfaces by Nanoimprint Lithography Using Specific NiNTA-Histidine Interactions Small 2007, 3, 1584-1592 10.1002/smll.200700046
33. Lee, B. K.; Lee, H. Y.; Kim, P.; Suh, K. Y.; Seo, J. H.; Cha, H. J.; Kawai, T. Stepwise Self-Assembly of a Protein Nanoarray from a Nanoimprinted Poly (Ethylene Glycol) Hydrogel Small 2008, 4, 342-348 10.1002/smll.200700865
34. Coyer, S. R.; Garcia, A. J.; Delamarche, E. Facile Preparation of Complex Protein Architectures with Sub-100-nm Resolution on Surfaces Angew. Chem., Int. Ed. 2007, 46, 6837-6840 10.1002/anie.200700989
35. Taylor, Z. R.; Patel, K.; Spain, T. G.; Keay, J. C.; Jernigen, J. D.; Sanchez, E. S.; Grady, B. P.; Johnson, M. B.; Schmidtke, D. W. Fabrication of Protein Dot Arrays via Particle Lithography Langmuir 2009, 25, 10932-10938 10.1021/la901512z
36. Liu, W.; Li, Y.; Wang, T.; Li, D.; Fang, L.; Zhu, S.; Shen, H.; Zhang, J.; Sun, H.; Yang, B. Elliptical Polymer Brush Ring Array Mediated Protein Patterning and Cell Adhesion on Patterned Protein Surfaces ACS Appl. Mater. Interfaces 2013, 5, 12587-12593 10.1021/am403808s
37. Li, Y.; Zhang, J.; Liu, W.; Li, D.; Fang, L.; Sun, H.; Yang, B. Hierarchical Polymer Brush Nanoarrays: A Versatile Way to Prepare Multiscale Patterns of Proteins ACS Appl. Mater. Interfaces 2013, 5, 2126-2132 10.1021/am3031757
38. Liu, W.; Liu, X.; Fangteng, J.; Wang, S.; Fang, L.; Shen, H.; Xiang, S.; Sun, H.; Yang, B. Bioinspired Polyethylene Terephthalate Nanocone Arrays with Underwater Superoleophobicity and Anti-Bioadhesion Properties Nanoscale 2014, 6, 13845-13853 10.1039/C4NR04471A
39. Xu, B. Y.; Yan, X. N.; Zhang, J. D.; Xu, J. J.; Chen, H. Y. Glass Etching to Bridge Micro- and Nanofluidics Lab Chip 2012, 12, 381-386 10.1039/C1LC20741E
40. Wang, S.; Wang, T.; Ge, P.; Xue, P.; Ye, S.; Chen, H.; Li, Z.; Zhang, J.; Yang, B. Controlling Flow Behavior of Water in Microfluidics with a Chemically Patterned Anisotropic Wetting Surface Langmuir 2015, 31, 4032-4039 10.1021/acs.langmuir.5b00328
41. Darbha, G. K.; Rai, U. S.; Singh, A. K.; Ray, P. C. Gold-Nanorod-Based Sensing of Sequence Specific HIV-1 Virus DNA by Using Hyper-Rayleigh Scattering Spectroscopy Chem.-Eur. J. 2008, 14, 3896-3903 10.1002/chem.200701850
42. Rant, U.; Arinaga, K.; Scherer, S.; Pringsheim, E.; Fujita, S.; Yokoyama, N.; Tornow, M.; Abstreiter, G. Switchable DNA Interfaces for the Highly Sensitive Detection of Label-Free DNA Targets Proc. Natl. Acad. Sci. U. S. A. 2007, 104, 17364-17369 10.1073/pnas.0703974104
43. Zhang, D.; Peng, Y.; Qi, H.; Gao, Q.; Zhang, C. Label-Free Electrochemical DNA Biosensor Array for Simultaneous Detection of the HIV-1 and HIV-2 Oligonucleotides Incorporating Different Hairpin-DNA Probes and Redox Indicator Biosens. Bioelectron. 2010, 25, 1088-1094 10.1016/j.bios.2009.09.032
44. Mannelli, I.; Minunni, M.; Tombelli, S.; Wang, R.; Spiriti, M. M.; Mascini, M. Direct Immobilisation of DNA Probes for the Development of Affinity Biosensors Bioelectrochemistry 2005, 66, 129-138 10.1016/j.bioelechem.2004.04.008
45. Yao, X.; Li, X.; Toledo, F.; Zurita-Lopez, C.; Gutova, M.; Momand, J.; Zhou, F. Sub-Attomole Oligonucleotide and p53 cDNA Determinations via a High-Resolution Surface Plasmon Resonance Combined with Oligonucleotide-Capped Gold Nanoparticle Signal Amplification Anal. Biochem. 2006, 354, 220-228 10.1016/j.ab.2006.04.011