-
1
-
-
58049219066
-
Reply to Ross-Ibarra and Gaut: Multiple domestications do appear monophyletic if an appropriate model is used
-
Allaby R., Fuller D., Brown T. 2008a. Reply to Ross-Ibarra and Gaut: Multiple domestications do appear monophyletic if an appropriate model is used. Proc. Natl. Acad. Sci. USA 105: E106.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. E106
-
-
Allaby, R.1
Fuller, D.2
Brown, T.3
-
2
-
-
52949124435
-
The genetic expectations of a protracted model for the origins of domesticated crops
-
Allaby R., Fuller D., Brown T. 2008b. The genetic expectations of a protracted model for the origins of domesticated crops. Proc. Natl. Acad. Sci. USA 105: 13982-13986.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 13982-13986
-
-
Allaby, R.1
Fuller, D.2
Brown, T.3
-
3
-
-
80052014395
-
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
-
Anisimova M., Gil M., Dufayard J.-F., Dessimoz C., Gascuel O. 2011. Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes. Syst. Biol. 60: 685-699.
-
(2011)
Syst. Biol.
, vol.60
, pp. 685-699
-
-
Anisimova, M.1
Gil, M.2
Dufayard, J.-F.3
Dessimoz, C.4
Gascuel, O.5
-
5
-
-
73549122582
-
Non-linear regression models for approximate Bayesian computation
-
Blum M., François O. 2010. Non-linear regression models for approximate Bayesian computation. Stat. Comput. 20: 63-73.
-
(2010)
Stat. Comput.
, vol.20
, pp. 63-73
-
-
Blum, M.1
François, O.2
-
6
-
-
85059423352
-
-
Boca Raton, FL: Chapman & Hall/CRC Handbooks of Modern Statistical Methods CRC Press
-
Brooks S., Gelman A., Jones G., Meng X., editors. 2011. Handbook of Markov chain Monte Carlo. Boca Raton, FL: Chapman & Hall/CRC Handbooks of Modern Statistical Methods CRC Press.
-
(2011)
Handbook of Markov chain Monte Carlo
-
-
Brooks, S.1
Gelman, A.2
Jones, G.3
Meng, X.4
-
7
-
-
58349089712
-
The complex origins of domesticated crops in the Fertile Crescent
-
Brown T., Jones M., Powell W., Allaby R. 2009. The complex origins of domesticated crops in the Fertile Crescent. Trends Ecol. Evol. 24: 103-109.
-
(2009)
Trends Ecol. Evol.
, vol.24
, pp. 103-109
-
-
Brown, T.1
Jones, M.2
Powell, W.3
Allaby, R.4
-
10
-
-
84857190557
-
An adaptive sequential Monte Carlo method for approximate Bayesiancomputation
-
Del Moral P., Doucet A., Jasra A. 2011. An adaptive sequential Monte Carlo method for approximate Bayesiancomputation. Stat.Comput. 22: 1-12.
-
(2011)
Stat.Comput.
, vol.22
, pp. 1-12
-
-
Del Moral, P.1
Doucet, A.2
Jasra, A.3
-
11
-
-
0000250265
-
Measures of the amount of ecologic association between species
-
Dice L. 1945. Measures of the amount of ecologic association between species. Ecology 26: 297-302.
-
(1945)
Ecology
, vol.26
, pp. 297-302
-
-
Dice, L.1
-
13
-
-
0022249579
-
A kernel method for smoothing point process data
-
Diggle P. 1985. A kernel method for smoothing point process data. Appl. Statist. 34(2): 138-147.
-
(1985)
Appl. Statist.
, vol.34
, Issue.2
, pp. 138-147
-
-
Diggle, P.1
-
14
-
-
78650666284
-
Quantitative traits and diversification
-
Fitz John R.G. 2010. Quantitative traits and diversification. Syst. Biol. 59: 619-633.
-
(2010)
Syst. Biol.
, vol.59
, pp. 619-633
-
-
Fitz John, R.G.1
-
15
-
-
3242701529
-
Modeling compositional heterogeneity
-
Foster P. 2004. Modeling compositional heterogeneity. Syst. Biol. 53: 485-495.
-
(2004)
Syst. Biol.
, vol.53
, pp. 485-495
-
-
Foster, P.1
-
16
-
-
0000736067
-
Simulating normalizing constants: From importance sampling to bridge sampling to path sampling
-
Gelman A., Meng X. 1998. Simulating normalizing constants: From importance sampling to bridge sampling to path sampling. Statist. Sci. 13: 163-185.
-
(1998)
Statist. Sci.
, vol.13
, pp. 163-185
-
-
Gelman, A.1
Meng, X.2
-
17
-
-
77956463857
-
Genetic perspectives on crop domestication
-
Gross B., Olsen K. 2010. Genetic perspectives on crop domestication. Trends Plant Sci. 15: 529-537.
-
(2010)
Trends Plant Sci.
, vol.15
, pp. 529-537
-
-
Gross, B.1
Olsen, K.2
-
18
-
-
84894557940
-
Species delimitation using Bayes factors: Simulations and application to the sceloporus scalaris species group (squamata: Phrynosomatidae
-
Grummer J.A., Bryson R.W., Reeder T.W. 2014. Species delimitation using Bayes factors: Simulations and application to the sceloporus scalaris species group (squamata: Phrynosomatidae). Syst. Biol. 63(2): 119-133.
-
(2014)
Syst. Biol.
, vol.63
, Issue.2
, pp. 119-133
-
-
Grummer, J.A.1
Bryson, R.W.2
Reeder, T.W.3
-
19
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of phyml 3.0
-
Guindon S., Dufayard J.-F., Lefort V., Anisimova M., Hordijk W., Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of phyml 3.0. Syst. Biol. 59: 307-321.
-
(2010)
Syst. Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.-F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
20
-
-
77958059433
-
Sources of error inherent in species-tree estimation: Impact of mutational and coalescent effects on accuracy and implications for choosing among different methods
-
Huang H., He Q., Kubatko L.S., Knowles L.L. 2010. Sources of error inherent in species-tree estimation: Impact of mutational and coalescent effects on accuracy and implications for choosing among different methods. Syst. Biol. 59: 573-583.
-
(2010)
Syst. Biol.
, vol.59
, pp. 573-583
-
-
Huang, H.1
He, Q.2
Kubatko, L.S.3
Knowles, L.L.4
-
21
-
-
11944268967
-
Performance of phylogenetic methods in simulation
-
Huelsenbeck J. 1995. Performance of phylogenetic methods in simulation. Syst. Biol. 44: 17.
-
(1995)
Syst. Biol.
, vol.44
, pp. 17
-
-
Huelsenbeck, J.1
-
22
-
-
0028177080
-
A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates
-
Kuhner M.K., Felsenstein J. 1994. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol. Biol. Evol. 11: 459-68.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 459-468
-
-
Kuhner, M.K.1
Felsenstein, J.2
-
23
-
-
84887319003
-
The influence of gene flow on species tree estimation: A simulation study
-
Leaché A.D., Harris R.B., Rannala B., Yang Z. 2014. The influence of gene flow on species tree estimation: A simulation study. Syst. Biol. 63: 17-30.
-
(2014)
Syst. Biol.
, vol.63
, pp. 17-30
-
-
Leaché, A.D.1
Harris, R.B.2
Rannala, B.3
Yang, Z.4
-
24
-
-
79951561454
-
The accuracy of species tree estimation under simulation: A comparison of methods
-
Leaché A.D., Rannala B. 2011. The accuracy of species tree estimation under simulation: A comparison of methods. Syst. Biol. 60: 126-137.
-
(2011)
Syst. Biol.
, vol.60
, pp. 126-137
-
-
Leaché, A.D.1
Rannala, B.2
-
25
-
-
0004182828
-
Monte Carlo strategies in scientific computing
-
New York: Springer
-
Liu J. 2008. Monte Carlo strategies in scientific computing. Springer Series in Statistics. New York: Springer.
-
(2008)
Springer Series in Statistics
-
-
Liu, J.1
-
27
-
-
79957761306
-
Molecular evidence for a single evolutionary origin of domesticated rice
-
Molina J., Sikora M., Garud N., Flowers J., Rubinstein S., Reynolds A., Huang P., Jackson S., Schaal B., Bustamante C., Boyko A., Purugganan M. 2011. Molecular evidence for a single evolutionary origin of domesticated rice. Proc. Natl. Acad. Sci. USA 108: 8351-8356.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 8351-8356
-
-
Molina, J.1
Sikora, M.2
Garud, N.3
Flowers, J.4
Rubinstein, S.5
Reynolds, A.6
Huang, P.7
Jackson, S.8
Schaal, B.9
Bustamante, C.10
Boyko, A.11
Purugganan, M.12
-
28
-
-
78651519565
-
The shape and temporal dynamics of phylogenetic trees arising from geographic speciation
-
Pigot A.L., Phillimore A.B., Owens I.P., Orme C.D.L. 2010. The shape and temporal dynamics of phylogenetic trees arising from geographic speciation. Syst. Biol. 59: 660-673.
-
(2010)
Syst. Biol.
, vol.59
, pp. 660-673
-
-
Pigot, A.L.1
Phillimore, A.B.2
Owens, I.P.3
Orme, C.D.L.4
-
29
-
-
0442293846
-
Inference for deterministic simulation models: The Bayesian melding approach
-
Poole D., Raftery A. 2000. Inference for deterministic simulation models: The Bayesian melding approach. JASA 95: 1244-1255.
-
(2000)
JASA
, vol.95
, pp. 1244-1255
-
-
Poole, D.1
Raftery, A.2
-
30
-
-
84950955471
-
Inference from a deterministic population dynamics model for bowhead whales
-
Raftery A., Givens G., Zeh J. 1995. Inference from a deterministic population dynamics model for bowhead whales. JASA 90: 402-416.
-
(1995)
JASA
, vol.90
, pp. 402-416
-
-
Raftery, A.1
Givens, G.2
Zeh, J.3
-
31
-
-
0019424782
-
Comparison of phylogenetic trees
-
Robinson D., Foulds L. 1981. Comparison of phylogenetic trees. Math. Biosci. 53: 131-147.
-
(1981)
Math. Biosci.
, vol.53
, pp. 131-147
-
-
Robinson, D.1
Foulds, L.2
-
32
-
-
58049204501
-
Multiple domestications do not appear monophyletic
-
Ross-Ibarra J., Gaut B. 2008. Multiple domestications do not appear monophyletic. Proc. Natl. Acad. Sci. USA 105: E105.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. E105
-
-
Ross-Ibarra, J.1
Gaut, B.2
-
33
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N., Nei M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
34
-
-
33947136278
-
Assessing uncertainty in urban simulations using Bayesian melding
-
Sevcíková H., Raftery A., Waddell P. 2007. Assessing uncertainty in urban simulations using Bayesian melding. Transport Res. B-Meth. 41: 652-669.
-
(2007)
Transport Res. B-Meth.
, vol.41
, pp. 652-669
-
-
Sevcíková, H.1
Raftery, A.2
Waddell, P.3
-
35
-
-
80055090422
-
Uncertain benefits: Application of Bayesian melding to the Alaskan Way Viaduct in Seattle
-
Sevcíková H., Raftery A., Waddell P. 2011. Uncertain benefits: Application of Bayesian melding to the Alaskan Way Viaduct in Seattle. Transport Res. A 45: 540-553.
-
(2011)
Transport Res. A
, vol.45
, pp. 540-553
-
-
Sevcíková, H.1
Raftery, A.2
Waddell, P.3
-
36
-
-
0003608557
-
Principles of numerical taxonomy
-
San Francisco: W.H. Freeman
-
Sokal R., Sneath P. 1963. Principles of numerical taxonomy. Series of books in biology. San Francisco: W.H. Freeman.
-
(1963)
Series of Books in Biology
-
-
Sokal, R.1
Sneath, P.2
-
37
-
-
80052006478
-
Missing data in phylogenetic analysis: Reconciling results from simulations and empirical data
-
Wiens J.J., Morrill M.C. 2011. Missing data in phylogenetic analysis: Reconciling results from simulations and empirical data. Syst. Biol. 60: 719-731.
-
(2011)
Syst. Biol.
, vol.60
, pp. 719-731
-
-
Wiens, J.J.1
Morrill, M.C.2
-
38
-
-
80054890844
-
Evaluation of a Bayesian coalescent method of species delimitation
-
Zhang C., Zhang D.-X., Zhu T., Yang Z. 2011. Evaluation of a Bayesian coalescent method of species delimitation. Syst. Biol. 60: 747-761.
-
(2011)
Syst. Biol.
, vol.60
, pp. 747-761
-
-
Zhang, C.1
Zhang, D.-X.2
Zhu, T.3
Yang, Z.4
-
39
-
-
0030335917
-
Nonparametric importance sampling
-
Zhang P. 1996. Nonparametric importance sampling. JASA 91: 1245-1253.
-
(1996)
JASA
, vol.91
, pp. 1245-1253
-
-
Zhang, P.1
|