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Volumn 192, Issue 3, 2015, Pages 403-417

A novel fully automatic scheme for fiducial marker-based alignment in electron tomography

Author keywords

Alignment; Electron tomography; Four point invariant; Point set registration

Indexed keywords

HEMOCYANIN;

EID: 84946832040     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2015.09.022     Document Type: Article
Times cited : (38)

References (35)
  • 1
    • 49249117841 scopus 로고    scopus 로고
    • 4-points congruent sets for robust pairwise surface registration
    • 85:1-85:10
    • Aiger D., Mitra N.J., Cohen-Or D. 4-points congruent sets for robust pairwise surface registration. ACM Trans. Graphics 2008, 27(3):85:1-85:10.
    • (2008) ACM Trans. Graphics , vol.27 , Issue.3
    • Aiger, D.1    Mitra, N.J.2    Cohen-Or, D.3
  • 4
    • 0016557674 scopus 로고
    • Multidimensional binary search trees used for associative searching
    • Bentley J.L. Multidimensional binary search trees used for associative searching. Commun. ACM 1975, 18(9):509-517.
    • (1975) Commun. ACM , vol.18 , Issue.9 , pp. 509-517
    • Bentley, J.L.1
  • 5
    • 0026821209 scopus 로고
    • A method for registration of 3-d shapes
    • Besl P., McKay N.D. A method for registration of 3-d shapes. IEEE Trans. Pattern Anal. 1992, 14(2):239-256.
    • (1992) IEEE Trans. Pattern Anal. , vol.14 , Issue.2 , pp. 239-256
    • Besl, P.1    McKay, N.D.2
  • 6
    • 33745007969 scopus 로고    scopus 로고
    • Simple algorithms for partial point set pattern matching under rigid motion
    • Bishnu A., Das S., Nandy S.C., Bhattacharya B.B. Simple algorithms for partial point set pattern matching under rigid motion. Pattern Recogn. 2006, 39(9):1662-1671.
    • (2006) Pattern Recogn. , vol.39 , Issue.9 , pp. 1662-1671
    • Bishnu, A.1    Das, S.2    Nandy, S.C.3    Bhattacharya, B.B.4
  • 7
    • 33744799156 scopus 로고    scopus 로고
    • Automatic tem image alignment by trifocal geometry
    • Brandt S., Ziese U. Automatic tem image alignment by trifocal geometry. J. Microsc. 2006, 222(1):1-14.
    • (2006) J. Microsc. , vol.222 , Issue.1 , pp. 1-14
    • Brandt, S.1    Ziese, U.2
  • 8
    • 0035783045 scopus 로고    scopus 로고
    • Automatic alignment of transmission electron microscope tilt series without fiducial markers
    • Brandt S., Heikkonen J., Engelhardt P. Automatic alignment of transmission electron microscope tilt series without fiducial markers. J. Struct. Biol. 2001, 136(3):201-213.
    • (2001) J. Struct. Biol. , vol.136 , Issue.3 , pp. 201-213
    • Brandt, S.1    Heikkonen, J.2    Engelhardt, P.3
  • 9
    • 0035782662 scopus 로고    scopus 로고
    • Multiphase method for automatic alignment of transmission electron microscope images using markers
    • Brandt S., Heikkonen J., Engelhardt P. Multiphase method for automatic alignment of transmission electron microscope images using markers. J. Struct. Biol. 2001, 133(1):10-22.
    • (2001) J. Struct. Biol. , vol.133 , Issue.1 , pp. 10-22
    • Brandt, S.1    Heikkonen, J.2    Engelhardt, P.3
  • 10
    • 84878527131 scopus 로고    scopus 로고
    • Structural biology in situ: the potential of subtomogram averaging
    • Briggs J.A. Structural biology in situ: the potential of subtomogram averaging. Curr. Opin. Struct. Biol. 2013, 23(2):261-267.
    • (2013) Curr. Opin. Struct. Biol. , vol.23 , Issue.2 , pp. 261-267
    • Briggs, J.A.1
  • 12
    • 79951639919 scopus 로고    scopus 로고
    • An automatic method of detecting and tracking fiducial markers for alignment in electron tomography
    • Cao M., Takaoka A., Zhang H.-B., Nishi R. An automatic method of detecting and tracking fiducial markers for alignment in electron tomography. J. Electron Microsc. 2011, 60(1):39-46.
    • (2011) J. Electron Microsc. , vol.60 , Issue.1 , pp. 39-46
    • Cao, M.1    Takaoka, A.2    Zhang, H.-B.3    Nishi, R.4
  • 14
    • 77950518374 scopus 로고    scopus 로고
    • Alignator: A gpu powered software package for robust fiducial-less alignment of cryo tilt-series
    • Castaño-Díez D., Scheffer M., Al-Amoudi A., Frangakis A.S. Alignator: A gpu powered software package for robust fiducial-less alignment of cryo tilt-series. J. Struct. Biol. 2010, 170(1):117-126.
    • (2010) J. Struct. Biol. , vol.170 , Issue.1 , pp. 117-126
    • Castaño-Díez, D.1    Scheffer, M.2    Al-Amoudi, A.3    Frangakis, A.S.4
  • 15
    • 0019574599 scopus 로고
    • Random sample consensus: a paradigm for model fitting with applications to image analysis and automated cartography
    • Fischler M.A., Bolles R.C. Random sample consensus: a paradigm for model fitting with applications to image analysis and automated cartography. Commun. ACM 1981, 24(6):381-395.
    • (1981) Commun. ACM , vol.24 , Issue.6 , pp. 381-395
    • Fischler, M.A.1    Bolles, R.C.2
  • 17
    • 0020374760 scopus 로고
    • Determination of a common origin in the micrographs of tilt series in three-dimensional electron microscopy
    • Guckenberger R. Determination of a common origin in the micrographs of tilt series in three-dimensional electron microscopy. Ultramicroscopy 1982, 9(1-2):167-173.
    • (1982) Ultramicroscopy , vol.9 , Issue.1-2 , pp. 167-173
    • Guckenberger, R.1
  • 18
    • 84898597586 scopus 로고    scopus 로고
    • A marker-free automatic alignment method based on scale-invariant features
    • Han R., Zhang F., Wan X., Fernndez J.-J., Sun F., Liu Z. A marker-free automatic alignment method based on scale-invariant features. J. Struct. Biol. 2014, 186(1):167-180.
    • (2014) J. Struct. Biol. , vol.186 , Issue.1 , pp. 167-180
    • Han, R.1    Zhang, F.2    Wan, X.3    Fernndez, J.-J.4    Sun, F.5    Liu, Z.6
  • 20
    • 0000876814 scopus 로고
    • Recognizing solid objects by alignment with an image
    • Huttenlocher D., Ullman S. Recognizing solid objects by alignment with an image. Int. J. Comput. Vision 1990, 5(2):195-212.
    • (1990) Int. J. Comput. Vision , vol.5 , Issue.2 , pp. 195-212
    • Huttenlocher, D.1    Ullman, S.2
  • 21
    • 79959497055 scopus 로고    scopus 로고
    • Robust point set registration using gaussian mixture models
    • Jian B., Vemuri B. Robust point set registration using gaussian mixture models. IEEE T. Pattern Anal. 2011, 33(8):1633-1645.
    • (2011) IEEE T. Pattern Anal. , vol.33 , Issue.8 , pp. 1633-1645
    • Jian, B.1    Vemuri, B.2
  • 23
    • 0029879295 scopus 로고    scopus 로고
    • Computer visualization of three-dimensional image data using imod
    • Kremer J.R., Mastronarde D.N., McIntosh J. Computer visualization of three-dimensional image data using imod. J. Struct. Biol. 1996, 116(1):71-76.
    • (1996) J. Struct. Biol. , vol.116 , Issue.1 , pp. 71-76
    • Kremer, J.R.1    Mastronarde, D.N.2    McIntosh, J.3
  • 24
    • 0002439918 scopus 로고
    • Least-squares method of alignment using markers
    • Springer, US, J. Frank (Ed.)
    • Lawrence M. Least-squares method of alignment using markers. Electron Tomography 1992, 197-204. Springer, US. J. Frank (Ed.).
    • (1992) Electron Tomography , pp. 197-204
    • Lawrence, M.1
  • 25
    • 33646070293 scopus 로고    scopus 로고
    • Transform-based backprojection for volume reconstruction of large format electron microscope tilt series
    • Lawrence A., Bouwer J.C., Perkins G., Ellisman M.H. Transform-based backprojection for volume reconstruction of large format electron microscope tilt series. J. Struct. Biol. 2006, 154(2):144-167.
    • (2006) J. Struct. Biol. , vol.154 , Issue.2 , pp. 144-167
    • Lawrence, A.1    Bouwer, J.C.2    Perkins, G.3    Ellisman, M.H.4
  • 26
    • 0029311291 scopus 로고
    • A marker-free alignment method for electron tomography
    • Liu Y., Penczek P.A., McEwen B.F., Frank J. A marker-free alignment method for electron tomography. Ultramicroscopy 1995, 58(3-4):393-402.
    • (1995) Ultramicroscopy , vol.58 , Issue.3-4 , pp. 393-402
    • Liu, Y.1    Penczek, P.A.2    McEwen, B.F.3    Frank, J.4
  • 27
    • 70449109830 scopus 로고    scopus 로고
    • Non-linear bundle adjustment for electron tomography
    • WRI World Congress on Computer Science and Information Engineering, 2009
    • Phan, S., Bouwer, J., Lanman, J., Terada, M., Lawrence, A., 2009. Non-linear bundle adjustment for electron tomography. In: 2009 WRI World Congress on Computer Science and Information Engineering, vol. 1, pp. 604-612.
    • (2009) , vol.1 , pp. 604-612
    • Phan, S.1    Bouwer, J.2    Lanman, J.3    Terada, M.4    Lawrence, A.5
  • 29
    • 0033007402 scopus 로고    scopus 로고
    • Automatic acquisition of fiducial markers and alignment of images in tilt series for electron tomography
    • Ress D., Harlow M.L., Schwarz M., Marshall R.M., McMahan U.J. Automatic acquisition of fiducial markers and alignment of images in tilt series for electron tomography. J. Electron Microsc. 1999, 48(3):277-287.
    • (1999) J. Electron Microsc. , vol.48 , Issue.3 , pp. 277-287
    • Ress, D.1    Harlow, M.L.2    Schwarz, M.3    Marshall, R.M.4    McMahan, U.J.5
  • 32
    • 29244462551 scopus 로고    scopus 로고
    • Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography
    • Winkler H., Taylor K.A. Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography. Ultramicroscopy 2006, 106(3):240-254.
    • (2006) Ultramicroscopy , vol.106 , Issue.3 , pp. 240-254
    • Winkler, H.1    Taylor, K.A.2
  • 33
    • 84876705471 scopus 로고    scopus 로고
    • Marker-free dual-axis tilt series alignment
    • Winkler H., Taylor K.A. Marker-free dual-axis tilt series alignment. J. Struct. Biol. 2013, 182(2):117-124.
    • (2013) J. Struct. Biol. , vol.182 , Issue.2 , pp. 117-124
    • Winkler, H.1    Taylor, K.A.2
  • 34
    • 0037235940 scopus 로고    scopus 로고
    • Genetic algorithm for affine point pattern matching
    • Zhang L., Xu W., Chang C. Genetic algorithm for affine point pattern matching. Pattern Recogn. Lett. 2003, 24(1-3):9-19.
    • (2003) Pattern Recogn. Lett. , vol.24 , Issue.1-3 , pp. 9-19
    • Zhang, L.1    Xu, W.2    Chang, C.3
  • 35
    • 33845319257 scopus 로고    scopus 로고
    • Ucsf tomography: an integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction
    • Zheng S.Q., Keszthelyi B., Branlund E., Lyle J.M., Braunfeld M.B., Sedat J.W., Agard D.A. Ucsf tomography: an integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction. J. Struct. Biol. 2007, 157(1):138-147.
    • (2007) J. Struct. Biol. , vol.157 , Issue.1 , pp. 138-147
    • Zheng, S.Q.1    Keszthelyi, B.2    Branlund, E.3    Lyle, J.M.4    Braunfeld, M.B.5    Sedat, J.W.6    Agard, D.A.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.