-
1
-
-
77950263657
-
-
Cold Spring Harbor Laboratory Press, N.H. Barton, D.E. Briggs, J.A. Eisen, D.B. Goldstein, N.H. Patel (Eds.)
-
Evolution 2007, Cold Spring Harbor Laboratory Press. N.H. Barton, D.E. Briggs, J.A. Eisen, D.B. Goldstein, N.H. Patel (Eds.).
-
(2007)
Evolution
-
-
-
2
-
-
58149120776
-
Modeling the dynamics of transcriptional gene regulatory networks for animal development
-
Ben-Tabou de-Leon S., Davidson E.H. Modeling the dynamics of transcriptional gene regulatory networks for animal development. Dev. Biol. 2009, 325:317-328.
-
(2009)
Dev. Biol.
, vol.325
, pp. 317-328
-
-
Ben-Tabou de-Leon, S.1
Davidson, E.H.2
-
3
-
-
75549089639
-
Xenbase: gene expression and improved integration
-
Bowes J.B., Snyder K.A., Segerdell E., Jarabek C.J., Azam K., Zorn A.M., Vize P.D. Xenbase: gene expression and improved integration. Nucleic Acids Res. 2010, 38:D607-D612.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. D607-D612
-
-
Bowes, J.B.1
Snyder, K.A.2
Segerdell, E.3
Jarabek, C.J.4
Azam, K.5
Zorn, A.M.6
Vize, P.D.7
-
5
-
-
48249132857
-
Pervasive and persistent redundancy among duplicated genes in yeast
-
Dean E.J., Davis J.C., Davis R.W., Petrov D.A. Pervasive and persistent redundancy among duplicated genes in yeast. PLoS Genet. 2008, 4:e1000113.
-
(2008)
PLoS Genet.
, vol.4
, pp. e1000113
-
-
Dean, E.J.1
Davis, J.C.2
Davis, R.W.3
Petrov, D.A.4
-
6
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force A., Lynch M., Pickett F.B., Amores A., Yan Y.L., Postlethwait J. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 1999, 151:1531-1545.
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.L.5
Postlethwait, J.6
-
7
-
-
0014525545
-
Formation and detection of RNA-DNA hybrid molecules in cytological preparations
-
Gall J.G., Pardue M.L. Formation and detection of RNA-DNA hybrid molecules in cytological preparations. Proc. Natl. Acad. Sci. USA 1969, 63:378-383.
-
(1969)
Proc. Natl. Acad. Sci. USA
, vol.63
, pp. 378-383
-
-
Gall, J.G.1
Pardue, M.L.2
-
8
-
-
0004068679
-
Cells, embryos, and evolution: toward a cellular and developmental understanding of phenotypic variation and evolutionary adaptability
-
Blackwell Science, Malden, Mass
-
Gerhart J., Kirschner M. Cells, embryos, and evolution: toward a cellular and developmental understanding of phenotypic variation and evolutionary adaptability 1997, Blackwell Science, Malden, Mass.
-
(1997)
-
-
Gerhart, J.1
Kirschner, M.2
-
10
-
-
0020645064
-
The use of Xenopus oocytes for the expression of cloned genes
-
Gurdon J.B., Wickens M.P. The use of Xenopus oocytes for the expression of cloned genes. Methods Enzymol. 1983, 101:370-386.
-
(1983)
Methods Enzymol.
, vol.101
, pp. 370-386
-
-
Gurdon, J.B.1
Wickens, M.P.2
-
11
-
-
0034213262
-
Beta-catenin signaling activity dissected in the early Xenopus embryo: a novel antisense approach
-
Heasman J., Kofron M., Wylie C. Beta-catenin signaling activity dissected in the early Xenopus embryo: a novel antisense approach. Dev. Biol. 2000, 222:124-134.
-
(2000)
Dev. Biol.
, vol.222
, pp. 124-134
-
-
Heasman, J.1
Kofron, M.2
Wylie, C.3
-
12
-
-
54949148332
-
Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
-
Hogan D.J., Riordan D.P., Gerber A.P., Herschlag D., Brown P.O. Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol. 2008, 6:e255.
-
(2008)
PLoS Biol.
, vol.6
, pp. e255
-
-
Hogan, D.J.1
Riordan, D.P.2
Gerber, A.P.3
Herschlag, D.4
Brown, P.O.5
-
13
-
-
0029030065
-
Identification of a developmental timer regulating the stability of embryonic cyclin A and a new somatic A-type cyclin at gastrulation
-
Howe J.A., Howell M., Hunt T., Newport J.W. Identification of a developmental timer regulating the stability of embryonic cyclin A and a new somatic A-type cyclin at gastrulation. Genes Dev. 1995, 9:1164-1176.
-
(1995)
Genes Dev.
, vol.9
, pp. 1164-1176
-
-
Howe, J.A.1
Howell, M.2
Hunt, T.3
Newport, J.W.4
-
14
-
-
67649222418
-
The mechanism and pattern of yolk consumption provide insight into embryonic nutrition in Xenopus
-
Jorgensen P., Steen J.A.J., Steen H., Kirschner M.W. The mechanism and pattern of yolk consumption provide insight into embryonic nutrition in Xenopus. Development 2009, 136:1539-1548.
-
(2009)
Development
, vol.136
, pp. 1539-1548
-
-
Jorgensen, P.1
Steen, J.A.J.2
Steen, H.3
Kirschner, M.W.4
-
15
-
-
84908338722
-
Genome-wide RNA tomography in the zebrafish embryo
-
Junker J.P., Noël E.S., Guryev V., Peterson K.A., Shah G., Huisken J., McMahon A.P., Berezikov E., Bakkers J., van Oudenaarden A. Genome-wide RNA tomography in the zebrafish embryo. Cell 2014, 159:662-675.
-
(2014)
Cell
, vol.159
, pp. 662-675
-
-
Junker, J.P.1
Noël, E.S.2
Guryev, V.3
Peterson, K.A.4
Shah, G.5
Huisken, J.6
McMahon, A.P.7
Berezikov, E.8
Bakkers, J.9
van Oudenaarden, A.10
-
16
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B., Trapnell C., Pop M., Salzberg S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009, 10:R25.
-
(2009)
Genome Biol.
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
17
-
-
0021247591
-
Temporal and spatial regulation of fibronectin in early Xenopus development
-
Lee G., Hynes R., Kirschner M. Temporal and spatial regulation of fibronectin in early Xenopus development. Cell 1984, 36:729-740.
-
(1984)
Cell
, vol.36
, pp. 729-740
-
-
Lee, G.1
Hynes, R.2
Kirschner, M.3
-
18
-
-
79961123152
-
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
-
Li B., Dewey C.N. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 2011, 12:323.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 323
-
-
Li, B.1
Dewey, C.N.2
-
19
-
-
84904325891
-
MultiNotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes
-
McAlister G.C., Nusinow D.P., Jedrychowski M.P., Wühr M., Huttlin E.L., Erickson B.K., Rad R., Haas W., Gygi S.P. MultiNotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes. Anal. Chem. 2014, 86:7150-7158.
-
(2014)
Anal. Chem.
, vol.86
, pp. 7150-7158
-
-
McAlister, G.C.1
Nusinow, D.P.2
Jedrychowski, M.P.3
Wühr, M.4
Huttlin, E.L.5
Erickson, B.K.6
Rad, R.7
Haas, W.8
Gygi, S.P.9
-
20
-
-
0020407569
-
A major developmental transition in early Xenopus embryos: I. characterization and timing of cellular changes at the midblastula stage
-
Newport J., Kirschner M. A major developmental transition in early Xenopus embryos: I. characterization and timing of cellular changes at the midblastula stage. Cell 1982, 30:675-686.
-
(1982)
Cell
, vol.30
, pp. 675-686
-
-
Newport, J.1
Kirschner, M.2
-
22
-
-
84867349994
-
Predictive computation of genomic logic processing functions in embryonic development
-
Peter I.S., Faure E., Davidson E.H. Predictive computation of genomic logic processing functions in embryonic development. Proc. Natl. Acad. Sci. USA 2012, 109:16434-16442.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 16434-16442
-
-
Peter, I.S.1
Faure, E.2
Davidson, E.H.3
-
23
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhäusser B., Busse D., Li N., Dittmar G., Schuchhardt J., Wolf J., Chen W., Selbach M. Global quantification of mammalian gene expression control. Nature 2011, 473:337-342.
-
(2011)
Nature
, vol.473
, pp. 337-342
-
-
Schwanhäusser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
Wolf, J.6
Chen, W.7
Selbach, M.8
-
24
-
-
84927661939
-
Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs
-
Smits A.H., Lindeboom R.G.H., Perino M., van Heeringen S.J., Veenstra G.J.C., Vermeulen M. Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs. Nucleic Acids Res. 2014, 42:9880-9891.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 9880-9891
-
-
Smits, A.H.1
Lindeboom, R.G.H.2
Perino, M.3
van Heeringen, S.J.4
Veenstra, G.J.C.5
Vermeulen, M.6
-
25
-
-
84922480037
-
Regulation of RNA polymerase II activation by histone acetylation in single living cells
-
Stasevich T.J., Hayashi-Takanaka Y., Sato Y., Maehara K., Ohkawa Y., Sakata-Sogawa K., Tokunaga M., Nagase T., Nozaki N., McNally J.G., Kimura H. Regulation of RNA polymerase II activation by histone acetylation in single living cells. Nature 2014, 516:272-275.
-
(2014)
Nature
, vol.516
, pp. 272-275
-
-
Stasevich, T.J.1
Hayashi-Takanaka, Y.2
Sato, Y.3
Maehara, K.4
Ohkawa, Y.5
Sakata-Sogawa, K.6
Tokunaga, M.7
Nagase, T.8
Nozaki, N.9
McNally, J.G.10
Kimura, H.11
-
26
-
-
0019369234
-
A gene product required for correct initiation of segmental determination in Drosophila
-
Struhl G. A gene product required for correct initiation of segmental determination in Drosophila. Nature 1981, 293:36-41.
-
(1981)
Nature
, vol.293
, pp. 36-41
-
-
Struhl, G.1
-
27
-
-
84908167765
-
Quantitative proteomics of Xenopus laevis embryos: expression kinetics of nearly 4000 proteins during early development
-
Sun L., Bertke M.M., Champion M.M., Zhu G., Huber P.W., Dovichi N.J. Quantitative proteomics of Xenopus laevis embryos: expression kinetics of nearly 4000 proteins during early development. Sci. Rep. 2014, 4:4365.
-
(2014)
Sci. Rep.
, vol.4
, pp. 4365
-
-
Sun, L.1
Bertke, M.M.2
Champion, M.M.3
Zhu, G.4
Huber, P.W.5
Dovichi, N.J.6
-
28
-
-
79951567698
-
Remodeling of the metabolome during early frog development
-
Vastag L., Jorgensen P., Peshkin L., Wei R., Rabinowitz J.D., Kirschner M.W. Remodeling of the metabolome during early frog development. PLoS ONE 2011, 6:e16881.
-
(2011)
PLoS ONE
, vol.6
, pp. e16881
-
-
Vastag, L.1
Jorgensen, P.2
Peshkin, L.3
Wei, R.4
Rabinowitz, J.D.5
Kirschner, M.W.6
-
29
-
-
84891796097
-
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
-
Vizcaíno J.A., Deutsch E.W., Wang R., Csordas A., Reisinger F., Ríos D., Dianes J.A., Sun Z., Farrah T., Bandeira N., et al. ProteomeXchange provides globally coordinated proteomics data submission and dissemination. Nat. Biotechnol. 2014, 32:223-226.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 223-226
-
-
Vizcaíno, J.A.1
Deutsch, E.W.2
Wang, R.3
Csordas, A.4
Reisinger, F.5
Ríos, D.6
Dianes, J.A.7
Sun, Z.8
Farrah, T.9
Bandeira, N.10
-
30
-
-
84858439862
-
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
-
Vogel C., Marcotte E.M. Insights into the regulation of protein abundance from proteomic and transcriptomic analyses. Nat. Rev. Genet. 2012, 13:227-232.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 227-232
-
-
Vogel, C.1
Marcotte, E.M.2
-
31
-
-
0021355340
-
A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids
-
Wessel D., Flügge U.I. A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. Anal. Biochem. 1984, 138:141-143.
-
(1984)
Anal. Biochem.
, vol.138
, pp. 141-143
-
-
Wessel, D.1
Flügge, U.I.2
-
32
-
-
84868542018
-
Accurate multiplexed proteomics at the MS2 level using the complement reporter ion cluster
-
Wühr M., Haas W., McAlister G.C., Peshkin L., Rad R., Kirschner M.W., Gygi S.P. Accurate multiplexed proteomics at the MS2 level using the complement reporter ion cluster. Anal. Chem. 2012, 84:9214-9221.
-
(2012)
Anal. Chem.
, vol.84
, pp. 9214-9221
-
-
Wühr, M.1
Haas, W.2
McAlister, G.C.3
Peshkin, L.4
Rad, R.5
Kirschner, M.W.6
Gygi, S.P.7
-
33
-
-
84904036456
-
Deep proteomics of the Xenopus laevis egg using an mRNA-derived reference database
-
Wühr M., Freeman R.M., Presler M., Horb M.E., Peshkin L., Gygi S.P., Kirschner M.W. Deep proteomics of the Xenopus laevis egg using an mRNA-derived reference database. Curr. Biol. 2014, 24:1467-1475.
-
(2014)
Curr. Biol.
, vol.24
, pp. 1467-1475
-
-
Wühr, M.1
Freeman, R.M.2
Presler, M.3
Horb, M.E.4
Peshkin, L.5
Gygi, S.P.6
Kirschner, M.W.7
-
34
-
-
84945568319
-
The nuclear proteome of a vertebrate
-
Wühr M., Güttler T., Peshkin L., McAlister G.C., Sonnett M., Ishihara K., Groen A.C., Presler M., Erickson B.K., Mitchison T.J., et al. The nuclear proteome of a vertebrate. Curr. Biol. 2015, 25:2663-2671.
-
(2015)
Curr. Biol.
, vol.25
, pp. 2663-2671
-
-
Wühr, M.1
Güttler, T.2
Peshkin, L.3
McAlister, G.C.4
Sonnett, M.5
Ishihara, K.6
Groen, A.C.7
Presler, M.8
Erickson, B.K.9
Mitchison, T.J.10
-
35
-
-
79954452308
-
Mapping gene expression in two Xenopus species: evolutionary constraints and developmental flexibility
-
Yanai I., Peshkin L., Jorgensen P., Kirschner M.W. Mapping gene expression in two Xenopus species: evolutionary constraints and developmental flexibility. Dev. Cell 2011, 20:483-496.
-
(2011)
Dev. Cell
, vol.20
, pp. 483-496
-
-
Yanai, I.1
Peshkin, L.2
Jorgensen, P.3
Kirschner, M.W.4
-
36
-
-
77149148756
-
Regulation of cellular metabolism by protein lysine acetylation
-
Zhao S., Xu W., Jiang W., Yu W., Lin Y., Zhang T., Yao J., Zhou L., Zeng Y., Li H., et al. Regulation of cellular metabolism by protein lysine acetylation. Science 2010, 327:1000-1004.
-
(2010)
Science
, vol.327
, pp. 1000-1004
-
-
Zhao, S.1
Xu, W.2
Jiang, W.3
Yu, W.4
Lin, Y.5
Zhang, T.6
Yao, J.7
Zhou, L.8
Zeng, Y.9
Li, H.10
|