Lentzea guizhouensis sp. nov., a novel lithophilous actinobacterium isolated from limestone from the Karst area, Guizhou, China

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 108, Issue 6, 2015, Pages 1365-1372

  Cao, Cheng Liang ^a,b,c   Zhou, Xiao Qi ^c   Qin, Sheng ^c   Tao, Fa Xiang ^a   Jiang, Ji Hong ^c   Lian, Bin ^a,d  

^a INSTITUTE OF GEOCHEMISTRY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c JIANGSU NORMAL UNIVERSITY   (China)

^d NANJING NORMAL UNIVERSITY   (China)

Author keywords

Karst area; Lentzea guizhouensis sp. nov; Lithophilous; Polyphasic taxonomy

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; LIMESTONE; RIBOSOME RNA; CALCIUM CARBONATE; FATTY ACID; RIBOSOME DNA; RNA 16S;

ACTINOBACTERIA; ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHEMOTAXONOMY; CHINA; GENETIC SIMILARITY; LENTZEA FLAVIVERRUCOSA; LENTZEA GUIZHOUENSIS; LENTZEA JIANGXIENSIS; MICROBIAL MORPHOLOGY; NONHUMAN; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; STRAIN DIFFERENCE; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHYSIOLOGY; SCANNING ELECTRON MICROSCOPY;

ACTINOBACTERIA; BACTERIAL TYPING TECHNIQUES; CALCIUM CARBONATE; CHINA; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; ENVIRONMENTAL MICROBIOLOGY; FATTY ACIDS; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

EID: 84946488793     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-015-0589-x     Document Type: Article

References (30)

1. Collins MD, Pirouz T, Goodfellow M, Minnikin DE (1977) Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230
2. Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229
3. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376
4. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–789
5. Gordon RE, Barnett DA, Handerhan JE, Pang CH-N (1974) Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24:54–63
6. Groth I, Schumann P, Rainey FA, Martin K, Schuetze B, Augsten K (1997) Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47:1129–1133
7. Hasegawa T, Takizawa M, Tanida S (1983) A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29:319–322
8. He L, Li W, Huang Y, Wang L, Liu Z, Lanoot B, Vancanneyt M, Swings J (2005) Streptomyces jietaisiensis sp nov., isolated from soil in northern China. Int J Syst Evol Microbiol 55:1939–1944
9. Kelly KL (1964) Color-name charts illustrated with centroid colors. Inter-Society Color Council-National Bureau of Standards, Chicago
10. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721
11. Kluge AG, Farris JS (1969) Quantitative phyletics and the evolution of anurans. Syst Biol 18:1–32
12. Kurup PV, Schmitt JA (1973) Numerical taxonomy of Nocardia. Can J Microbiol 19:1035–1048
13. VP emend. Labeda, Hatano, Kroppenstedt and Tamura 2001, 1049. In: Goodfellow M, Kämpfer P, Busse H-J, Trujillo ME, Suzuki K-I, Ludwig W, Whitman WB (eds) Bergey’s manual of systematic bacteriology, part A, vol 5, 2nd edn. Springer, New York, pp 1379–1383
14. Labeda DP, Hatano K, Kroppenstedt RM, Tamura T (2001) Revival of the genus Lentzea and proposal for Lechevalieria gen. nov. Int J Syst Evol Microbiol 51:1045–1050
15. Labeda DP, Donahue JM, Sells SF, Kroppenstedt RM (2007) Lentzea kentuckyensis sp. nov., of equine origin. Int J Syst Evol Microbiol 57:1780–1783
16. Labeda DP, Goodfellow M, Chun J, Zhi XY, Li WJ et al (2011) Reassessment of the systematics of the suborder Pseudonocardineae: transfer of the genera within the family Actinosynnemataceae Labeda and Kroppenstedt 2000 emend. Zhi et al. 2009 into an emended family Pseudonocardiaceae Embley et al. 1989 emend. Zhi et al. 2009. Int J Syst Evol Microbiol 61:1259–1264
17. Lechevalier MP, Lechevalier HA (1970) Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20:435–443
18. Lee SD, Kim ES, Roe JH, Kim J, Kang SO, Hah YC (2000) Saccharothrix violacea sp. nov., isolated from a gold mine cave, and Saccharothrix albidocapillata comb. nov. Int J Syst Evol Microbiol 50:1315–1323
19. Li X, Zhang L, Ding Y, Gao Y, Ruan J, Huang Y (2012) Lentzea jiangxiensis sp. nov., isolated from acidic soil. Int J Syst Evol Microbiol 62:2342–2346
20. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167
21. Minnikin DE, O’donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241
22. Qin S, Li J, Chen HH, Zhao GZ, Zhu WY, Jiang CL, Xu LH, Li WJ (2009) Isolation, diversity, and antimicrobial activity of rare actinobacteria from medicinal plants of tropical rain forests in Xishuangbanna, China. Appl Environ Microbiol 75:6176–6186
23. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
24. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids, MIDI technical note 101. MIDI Inc., Newark
25. Shirling E, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340
26. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore EC, Murray RGE, Stackebrandt E, Starr MP (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464
27. AL. In: Williams ST, Sharpe ME, Holt JG (eds) Bergey’s manual of systematic bacteriology, vol 4. Williams & Wilkins, Baltimore, pp 2452–2492
28. Xie Q, Wang Y, Huang Y, Wu Y, Ba F, Liu Z (2002) Description of Lentzea flaviverrucosa sp. nov. and transfer of the type strain of Saccharothrix aerocolonigenes subsp. staurosporea to Lentzea albida. Int J Syst Evol Microbiol 52:1815–1820
29. Xu P, Li WJ, Tang SK, Zhang YQ, Chen GZ, Chen HH, Xu LH, Jiang CL (2005) Naxibacter alkalitolerans gen. nov., sp. nov., a novel member of the family ‘Oxalobacteraceae’ isolated from China. Int J Syst Evol Microbiol 55:1149–1153
30. Yassin AF, Rainey F, Brzezinka H, Jahnke KD, Weissbrodt H, Budzikiewicz H, Stackebrandt E, Schaal KP (1995) Lentzea gen. nov., a new genus of the order Actinomycetales. Int J Syst Bacteriol 45:357–363