-
1
-
-
4644309196
-
The functions of animal microRNAs
-
Ambros, V. (2004). The functions of animal microRNAs. Nature, 431, 350-355.
-
(2004)
Nature
, vol.431
, pp. 350-355
-
-
Ambros, V.1
-
2
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel, D.P. (2004). MicroRNAs: genomics, biogenesis, mechanism, and function. Cell, 116, 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
3
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel, D.P. (2009) MicroRNAs: target recognition and regulatory functions. Cell, 136, 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
4
-
-
12344269924
-
GO:TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
-
Boyle, E.I. et al. (2004). GO:TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics, 20, 3710-3715.
-
(2004)
Bioinformatics
, vol.20
, pp. 3710-3715
-
-
Boyle, E.I.1
-
5
-
-
18044377963
-
Principles of microRNA-target recognition
-
Brennecke, J. et al. (2005). Principles of microRNA-target recognition. PLoS Biol., 3, e85.
-
(2005)
PLoS Biol.
, vol.3
, pp. e85
-
-
Brennecke, J.1
-
6
-
-
84896698296
-
Discovery and visualization of miRNA-mRNA functional modules within integrated data using bicluster analysis
-
Bryan, K. et al. (2013). Discovery and visualization of miRNA-mRNA functional modules within integrated data using bicluster analysis. Nucleic Acids Res., 42, e17.
-
(2013)
Nucleic Acids Res.
, vol.42
, pp. e17
-
-
Bryan, K.1
-
7
-
-
77957802676
-
Systematic identification of conserved motif modules in the human genome
-
Cai, X. et al. (2010). Systematic identification of conserved motif modules in the human genome. BMC Genomics, 11, 567.
-
(2010)
BMC Genomics
, vol.11
, pp. 567
-
-
Cai, X.1
-
8
-
-
84891390878
-
Chipmodule: Systematic discovery of transcription factors and their cofactors from chip-seq data
-
Ding, J. et al. (2013). Chipmodule: systematic discovery of transcription factors and their cofactors from chip-seq data. Pac. Symp. Biocomput., 18, 320-331.
-
(2013)
Pac. Symp. Biocomput.
, vol.18
, pp. 320-331
-
-
Ding, J.1
-
9
-
-
84898988373
-
SIOMICS: A novel approach for systematic identification of motifs in ChIP-seq data
-
Ding, J. et al. (2014). SIOMICS: A novel approach for systematic identification of motifs in ChIP-seq data. Nucleic Acids Res., 42, e35.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. e35
-
-
Ding, J.1
-
10
-
-
1642374097
-
Specificity of microRNA target selection in translational repression
-
Doench, J.G. and Sharp, P.A. (2004). Specificity of microRNA target selection in translational repression. Genes Dev., 18, 504-511.
-
(2004)
Genes Dev.
, vol.18
, pp. 504-511
-
-
Doench, J.G.1
Sharp, P.A.2
-
11
-
-
77950920903
-
Transcriptome-wide identification of RNAbinding protein and microRNA target sites by PAR-CLIP
-
Hafner, M. et al. (2010). Transcriptome-wide identification of RNAbinding protein and microRNA target sites by PAR-CLIP. Cell, 141, 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
-
12
-
-
84876935138
-
Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding
-
Helwak, A. et al. (2013). Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. Cell, 153, 654-665.
-
(2013)
Cell
, vol.153
, pp. 654-665
-
-
Helwak, A.1
-
13
-
-
48349124629
-
MOPAT: A graph-based method to predict recurrent cis-regulatory modules from known motifs
-
Hu, J. et al. (2008). MOPAT: A graph-based method to predict recurrent cis-regulatory modules from known motifs. Nucleic Acids Res., 36, 4488-4497.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 4488-4497
-
-
Hu, J.1
-
14
-
-
79952199699
-
Identification of microRNA-mRNA modules using microarray data
-
Jayaswal, V. et al. (2011). Identification of microRNA-mRNA modules using microarray data. BMC Genomics, 12, 138.
-
(2011)
BMC Genomics
, vol.12
, pp. 138
-
-
Jayaswal, V.1
-
15
-
-
67149115119
-
Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs
-
Khan, A.A. et al. (2009). Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs. Nat. Biotechnol., 27, 549-555.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 549-555
-
-
Khan, A.A.1
-
16
-
-
13444312098
-
Substrate requirements for let-7 function in the developing zebrafish embryo
-
Kloosterman, W.P. et al. (2004). Substrate requirements for let-7 function in the developing zebrafish embryo. Nucleic Acids Res., 32, 6284-6291.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 6284-6291
-
-
Kloosterman, W.P.1
-
17
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek, A. et al. (2005). Combinatorial microRNA target predictions. Nat. Genet., 37, 495-500.
-
(2005)
Nat. Genet.
, vol.37
, pp. 495-500
-
-
Krek, A.1
-
18
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis, B.P. et al. (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell, 120, 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
-
19
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis, B.P. et al. (2003). Prediction of mammalian microRNA targets. Cell, 115, 787-798.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
-
20
-
-
34249856066
-
Distance constraints between microRNA target sites dictate efficacy and cooperativity
-
Saetrom, P. et al. (2007). Distance constraints between microRNA target sites dictate efficacy and cooperativity. Nucleic Acids Res., 35, 2333-2342.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 2333-2342
-
-
Saetrom, P.1
-
21
-
-
33750221973
-
Effects of Dicer and Argonaute down-regulation on mRNA levels in human HEK293 cells
-
Schmitter, D. et al. (2006). Effects of Dicer and Argonaute down-regulation on mRNA levels in human HEK293 cells. Nucleic Acids Res., 34, 4801-4815.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 4801-4815
-
-
Schmitter, D.1
-
22
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey, J.D. and Tibshirani, R. (2003). Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. USA, 100, 9440-9445.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
23
-
-
0942301280
-
The C. Elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 30UTR
-
Vella, M.C. et al. (2004). The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 30UTR. Genes Dev., 18, 132-137.
-
(2004)
Genes Dev.
, vol.18
, pp. 132-137
-
-
Vella, M.C.1
-
24
-
-
84900814334
-
Composition of seed sequence is a major determinant of microRNA targeting patterns
-
Wang, X. (2014). Composition of seed sequence is a major determinant of microRNA targeting patterns. Bioinformatics, 30, 1377-1383.
-
(2014)
Bioinformatics
, vol.30
, pp. 1377-1383
-
-
Wang, X.1
-
26
-
-
0001884644
-
Individual comparisons by ranking methods
-
Wilcoxon, F. (1945). Individual comparisons by ranking methods. Biometrics Bull., 1, 80-83.
-
(1945)
Biometrics Bull.
, vol.1
, pp. 80-83
-
-
Wilcoxon, F.1
-
27
-
-
79952791439
-
Practical aspects of microRNA target prediction
-
Witkos, T.M., Koscianska, E. and Krzyzosiak, W.J. (2011). Practical aspects of microRNA target prediction. Curr. Mol. Med., 11, 93-109.
-
(2011)
Curr. Mol. Med.
, vol.11
, pp. 93-109
-
-
Witkos, T.M.1
Koscianska, E.2
Krzyzosiak, W.J.3
-
28
-
-
77951092028
-
Multiple microRNAs modulate p21Cip1/Waf1 expression by directly targeting its 30 untranslated region
-
Wu, S. et al. (2010). Multiple microRNAs modulate p21Cip1/Waf1 expression by directly targeting its 30 untranslated region. Oncogene, 29, 2302-2308.
-
(2010)
Oncogene
, vol.29
, pp. 2302-2308
-
-
Wu, S.1
-
29
-
-
79951570957
-
MiRNA-miRNA synergistic network: Construction via coregulating functional modules and disease miRNA topological features
-
Xu, J. et al. (2011). MiRNA-miRNA synergistic network: construction via coregulating functional modules and disease miRNA topological features. Nucleic Acids Res., 39, 825-836.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 825-836
-
-
Xu, J.1
-
30
-
-
79959448071
-
A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules
-
Zhang, S. et al. (2011). A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules. Bioinformatics, 27, i401-i409.
-
(2011)
Bioinformatics
, vol.27
, pp. i401-i409
-
-
Zhang, S.1
|