-
1
-
-
84944464883
-
-
John Wiley & Sons, Inc., Hoboken, New Jersey
-
Campos D, Matos S, Oliveira JL: Current Methodologies for Biomedical Named Entity Recognition. John Wiley & Sons, Inc., Hoboken, New Jersey; 2013, 839-868.
-
(2013)
Current Methodologies for Biomedical Named Entity Recognition
, pp. 839-868
-
-
Campos, D.1
Matos, S.2
Oliveira, J.L.3
-
2
-
-
51049088874
-
Overview of BioCreative II gene mention recognition
-
Smith L, Tanabe LK, Ando RJn, Kuo C-J, Chung I-F, Hsu C-N, Lin Y-S, Klinger R, Friedrich CM, Ganchev K, Torii M, Liu H, Haddow B, Struble CA, Povinelli RJ, Vlachos A, Baumgartner Wa, Hunter L, Carpenter B, Tsai RT-H, Dai H-J, Liu F, Chen Y, Sun C, Katrenko S, Adriaans P, Blaschke C, Torres R, Neves M, Nakov P, Divoli A, Manã-lópez M, Mata J, Wilbur WJ: Overview of BioCreative II gene mention recognition. Genome Biology 2008, 9(Suppl 2):2.
-
(2008)
Genome Biology
, vol.9
, pp. 2
-
-
Smith, L.1
Tanabe, L.K.2
Ando, R.J.3
Kuo, C.-J.4
Chung, I.-F.5
Hsu, C.-N.6
Lin, Y.-S.7
Klinger, R.8
Friedrich, C.M.9
Ganchev, K.10
Torii, M.11
Liu, H.12
Haddow, B.13
Struble, C.A.14
Povinelli, R.J.15
Vlachos, A.16
Wa, B.17
Hunter, L.18
Carpenter, B.19
Tsai, R.T.-H.20
Dai, H.-J.21
Liu, F.22
Chen, Y.23
Sun, C.24
Katrenko, S.25
Adriaans, P.26
Blaschke, C.27
Torres, R.28
Neves, M.29
Nakov, P.30
Divoli, A.31
Manã-López, M.32
Mata, J.33
Wilbur, W.J.34
more..
-
3
-
-
80052774027
-
The gene normalization task in BioCreative III
-
Lu Z, Kao H-Y, Wei C-H, Huang M, Liu J, Kuo C-J, Hsu C-N, Tsai RT-H, Dai HJ, Okazaki N, Cho H-C, Gerner M, Solt I, Agarwal S, Liu F, Vishnyakova D, Ruch P, Romacker M, Rinaldi F, Bhattacharya S, Srinivasan P, Liu H, Torii M, Matos S, Campos D, Verspoor K, Livingston KM, Wilbur WJ: The gene normalization task in BioCreative III. BMC bioinformatics 2011, 12(Suppl 8):2.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 2
-
-
Lu, Z.1
Kao, H.-Y.2
Wei, C.-H.3
Huang, M.4
Liu, J.5
Kuo, C.-J.6
Hsu, C.-N.7
Tsai, R.T.-H.8
Dai, H.J.9
Okazaki, N.10
Cho, H.-C.11
Gerner, M.12
Solt, I.13
Agarwal, S.14
Liu, F.15
Vishnyakova, D.16
Ruch, P.17
Romacker, M.18
Rinaldi, F.19
Bhattacharya, S.20
Srinivasan, P.21
Liu, H.22
Torii, M.23
Matos, S.24
Campos, D.25
Verspoor, K.26
Livingston, K.M.27
Wilbur, W.J.28
more..
-
4
-
-
84897825900
-
Biomedical named entity recognition: A survey of machine-learning tools
-
InTech, Rijeka, Croatia Sakurai S
-
Campos D, Matos S, Oliveira JL: Biomedical Named Entity Recognition: A Survey of Machine-Learning Tools. In Theory and Applications for Advanced Text Mining, InTech, Rijeka, Croatia Sakurai S 2012, 175-195.
-
(2012)
Theory and Applications for Advanced Text Mining
, pp. 175-195
-
-
Campos, D.1
Matos, S.2
Oliveira, J.L.3
-
5
-
-
84874255547
-
Open-domain anatomical entity mention detection
-
Association for Computational Linguistics, Stroudsburg, PA, USA
-
Ohta T, Pyysalo S, Tsujii J, Ananiadou S: Open-domain anatomical entity mention detection. Proceedings of the Workshop on Detecting Structure in Scholarly Discourse. ACL '12, Association for Computational Linguistics, Stroudsburg, PA, USA 2012, 27-36.
-
(2012)
Proceedings of the Workshop on Detecting Structure in Scholarly Discourse. ACL '12
, pp. 27-36
-
-
Ohta, T.1
Pyysalo, S.2
Tsujii, J.3
Ananiadou, S.4
-
6
-
-
84875575941
-
An improved corpus of disease mentions in PubMed citations
-
Association for Computational Linguistics, Stroudsburg, PA, USA
-
Doʇan RI, Lu Z: An improved corpus of disease mentions in PubMed citations. Proceedings of BioNLP'12. Association for Computational Linguistics, Stroudsburg, PA, USA 2012.
-
(2012)
Proceedings of BioNLP'12
-
-
Doʇan, R.I.1
Lu, Z.2
-
7
-
-
84863516719
-
Concept annotation in the CRAFT corpus
-
Bada M, Eckert M, Evans D, Garcia K, Shipley K, Sitnikov D, Baumgartner Wa, Cohen KB, Verspoor K, Blake JA, Hunter LE: Concept annotation in the CRAFT corpus. BMC bioinformatics 2012, 13:161.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 161
-
-
Bada, M.1
Eckert, M.2
Evans, D.3
Garcia, K.4
Shipley, K.5
Sitnikov, D.6
Baumgartner, W.7
Cohen, K.B.8
Verspoor, K.9
Blake, J.A.10
Hunter, L.E.11
-
8
-
-
84884469671
-
A modular framework for biomedical concept recognition
-
Campos D, Matos S, Oliveira JL: A modular framework for biomedical concept recognition. BMC bioinformatics 2013, 14(281).
-
(2013)
BMC Bioinformatics
, vol.14
, Issue.281
-
-
Campos, D.1
Matos, S.2
Oliveira, J.L.3
-
9
-
-
79960604459
-
Text mining for drugs and chemical compounds: Methods, tools and applications
-
Vazquez M, Krallinger M, Leitner F: Text Mining for Drugs and Chemical Compounds: Methods, Tools and Applications. Molecular Informatics 2011, 30(6-7):506-519.
-
(2011)
Molecular Informatics
, vol.30
, Issue.6-7
, pp. 506-519
-
-
Vazquez, M.1
Krallinger, M.2
Leitner, F.3
-
10
-
-
70449387056
-
A dictionary to identify small molecules and drugs in free text
-
(Oxford, England)
-
Hettne KM, Stierum RH, Schuemie MJ, Hendriksen PJM, Schijvenaars BJa, Mulligen EMv, Kleinjans J, Kors Ja: A dictionary to identify small molecules and drugs in free text. Bioinformatics (Oxford, England) 2009, 25(22):2983-2991.
-
(2009)
Bioinformatics
, vol.25
, Issue.22
, pp. 2983-2991
-
-
Hettne, K.M.1
Stierum, R.H.2
Schuemie, M.J.3
Hendriksen, P.J.M.4
Schijvenaars, B.J.5
Mulligen, E.M.6
Kleinjans, J.7
Kors, J.8
-
11
-
-
84862660470
-
-
Workshop on Building and Evaluating Resources for Biomedical Text Mining (Language Resources and Evaluation Conference)
-
Kolárik C, Klinger R, Friedrich CM, Hofmann-Apitius M, Fluck J: Chemical names: terminological resources and corpora annotation. Workshop on Building and Evaluating Resources for Biomedical Text Mining (Language Resources and Evaluation Conference) 2008, 51-58.
-
(2008)
Chemical Names: Terminological Resources and Corpora Annotation
, pp. 51-58
-
-
Kolárik, C.1
Klinger, R.2
Friedrich, C.M.3
Hofmann-Apitius, M.4
Fluck, J.5
-
12
-
-
84901002352
-
Annotation of chemical named entities
-
Association for Computational Linguistics, Stroudsburg, PA, USA
-
Corbett P, Batchelor C, Teufel S: Annotation of chemical named entities. Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing. BioNLP '07. Association for Computational Linguistics, Stroudsburg, PA, USA 2007, 57-64.
-
(2007)
Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing. BioNLP '07
, pp. 57-64
-
-
Corbett, P.1
Batchelor, C.2
Teufel, S.3
-
13
-
-
56649102386
-
Cascaded classifiers for confidence-based chemical named entity recognition
-
Corbett P, Copestake AA: Cascaded classifiers for confidence-based chemical named entity recognition. BMC Bioinformatics 2008, 9(S-11).
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.S-11
-
-
Corbett, P.1
Copestake, A.A.2
-
14
-
-
46249113462
-
Detection of IUPAC and IUPAC-like chemical names
-
(Oxford, England)
-
Klinger R, Kolárik C, Fluck J, Hofmann-Apitius M, Friedrich CM: Detection of IUPAC and IUPAC-like chemical names. Bioinformatics (Oxford, England) 2008, 24(13):268-76.
-
(2008)
Bioinformatics
, vol.24
, Issue.13
, pp. 268-276
-
-
Klinger, R.1
Kolárik, C.2
Fluck, J.3
Hofmann-Apitius, M.4
Friedrich, C.M.5
-
15
-
-
84901009764
-
Overview of the chemical compound and drug name recognition (chemdner) task
-
Krallinger M, Leitner F, Rabal O, Vazquez M, Oyarzabal J, Valencia A: Overview of the chemical compound and drug name recognition (chemdner) task. BioCreative Challenge Evaluation Workshop 2013, 2:2.
-
(2013)
BioCreative Challenge Evaluation Workshop
, vol.2
, pp. 2
-
-
Krallinger, M.1
Leitner, F.2
Rabal, O.3
Vazquez, M.4
Oyarzabal, J.5
Valencia, A.6
-
16
-
-
84880552535
-
BeCAS: Biomedical concept recognition services and visualization
-
(Oxford, England)
-
Nunes T, Campos D, Matos S, Oliveira JL: BeCAS: biomedical concept recognition services and visualization. Bioinformatics (Oxford, England) 2013, 29(15):1915-1916.
-
(2013)
Bioinformatics
, vol.29
, Issue.15
, pp. 1915-1916
-
-
Nunes, T.1
Campos, D.2
Matos, S.3
Oliveira, J.L.4
-
19
-
-
84873744177
-
Gimli: Open source and high-performance biomedical name recognition
-
Campos D, Matos S, Oliveira JL: Gimli: open source and high-performance biomedical name recognition. BMC bioinformatics 2013, 14(1):54.
-
(2013)
BMC Bioinformatics
, vol.14
, Issue.1
, pp. 54
-
-
Campos, D.1
Matos, S.2
Oliveira, J.L.3
-
20
-
-
84888284642
-
-
Alias-i I: LingPipe.[http://alias-i.com/lingpipe/index.html].
-
LingPipe
-
-
-
21
-
-
84865060319
-
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools
-
Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner Wa, Bada M, Palmer M, Hunter LE: A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools. BMC bioinformatics 2012, 13:207.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 207
-
-
Verspoor, K.1
Cohen, K.B.2
Lanfranchi, A.3
Warner, C.4
Johnson, H.L.5
Roeder, C.6
Choi, J.D.7
Funk, C.8
Malenkiy, Y.9
Eckert, M.10
Xue, N.11
Baumgartner, W.12
Bada, M.13
Palmer, M.14
Hunter, L.E.15
-
22
-
-
80053380720
-
Dependency parsing and domain adaptation with LR models and parser ensembles
-
Association for Computational Linguistics
-
Sagae K: Dependency parsing and domain adaptation with LR models and parser ensembles. Eleventh Conference on Computational Natural Language Learning, Prague, Czech Republic. Association for Computational Linguistics 2007, 1044-1050.
-
(2007)
Eleventh Conference on Computational Natural Language Learning, Prague, Czech Republic
, pp. 1044-1050
-
-
Sagae, K.1
-
23
-
-
38549127678
-
ChEBI: A database and ontology for chemical entities of biological interest
-
Degtyarenko K, De Matos P, Ennis M, Hastings J, Zbinden M, McNaught A, Alcántara R, Darsow M, Guedj M, Ashburner M: ChEBI: a database and ontology for chemical entities of biological interest. Nucleic acids research 2008, 36(suppl 1):344-350.
-
(2008)
Nucleic Acids Research
, vol.36
, pp. 344-350
-
-
Degtyarenko, K.1
De Matos, P.2
Ennis, M.3
Hastings, J.4
Zbinden, M.5
McNaught, A.6
Alcántara, R.7
Darsow, M.8
Guedj, M.9
Ashburner, M.10
-
24
-
-
58149200928
-
Comparative toxicogenomics database: A knowledgebase and discovery tool for chemical-gene-disease networks
-
37 Database
-
Davis AP, Murphy CG, Saraceni-Richards CA, Rosenstein MC, Wiegers TC, Mattingly CJ: Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks. Nucleic acids research 2009, 37 Database: 786-92.
-
(2009)
Nucleic Acids Research
, pp. 786-792
-
-
Davis, A.P.1
Murphy, C.G.2
Saraceni-Richards, C.A.3
Rosenstein, M.C.4
Wiegers, T.C.5
Mattingly, C.J.6
-
25
-
-
67849104638
-
Pubchem: A public information system for analyzing bioactivities of small molecules
-
Wang Y, Xiao J, Suzek TO, Zhang J, Wang J, Bryant SH: Pubchem: a public information system for analyzing bioactivities of small molecules. Nucleic acids research 2009, 37(suppl 2):623-633.
-
(2009)
Nucleic Acids Research
, vol.37
, pp. 623-633
-
-
Wang, Y.1
Xiao, J.2
Suzek, T.O.3
Zhang, J.4
Wang, J.5
Bryant, S.H.6
-
26
-
-
33644876210
-
DrugBank: A comprehensive resource for in silico drug discovery and exploration
-
34 Database
-
Wishart DS, Knox C, Guo AC, Shrivastava S, Hassanali M, Stothard P, Chang Z, Woolsey J: DrugBank: a comprehensive resource for in silico drug discovery and exploration. Nucleic acids research 2006, 34 Database: 668-72.
-
(2006)
Nucleic Acids Research
, pp. 668-672
-
-
Wishart, D.S.1
Knox, C.2
Guo, A.C.3
Shrivastava, S.4
Hassanali, M.5
Stothard, P.6
Chang, Z.7
Woolsey, J.8
-
27
-
-
84860473173
-
Harmonization of gene/protein annotations: Towards a gold standard MEDLINE
-
(Oxford, England)
-
Campos D, Matos S, Lewin I, Oliveira JL, Rebholz-Schuhmann D: Harmonization of gene/protein annotations: towards a gold standard MEDLINE. Bioinformatics (Oxford, England) 2012, 28(9):1253-1261.
-
(2012)
Bioinformatics
, vol.28
, Issue.9
, pp. 1253-1261
-
-
Campos, D.1
Matos, S.2
Lewin, I.3
Oliveira, J.L.4
Rebholz-Schuhmann, D.5
-
28
-
-
0041627757
-
-
Pacific Symposium on Biocomputing, Hawaii, HI, USA Computer Science Division, University of California, Berkeley, Berkeley, CA 94720, USA
-
Schwartz AS, Hearst MA: A simple algorithm for identifying abbreviation definitions in biomedical text. Pacific Symposium on Biocomputing, Hawaii, HI, USA Computer Science Division, University of California, Berkeley, Berkeley, CA 94720, USA; 2003, 451-462.
-
(2003)
A Simple Algorithm for Identifying Abbreviation Definitions in Biomedical Text
, pp. 451-462
-
-
Schwartz, A.S.1
Hearst, M.A.2
|