-
1
-
-
61449243886
-
MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions
-
Chautard, E., Ballut, L., Thierry-Mieg, N. and Ricard-Blum, S. (2009) MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions. Bioinforma. Oxf. Engl., 25, 690-691.
-
(2009)
Bioinforma. Oxf. Engl.
, vol.25
, pp. 690-691
-
-
Chautard, E.1
Ballut, L.2
Thierry-Mieg, N.3
Ricard-Blum, S.4
-
2
-
-
78651301312
-
MatrixDB, the extracellular matrix interaction database
-
Chautard, E., Fatoux-Ardore, M., Ballut, L., Thierry-Mieg, N. and Ricard-Blum, S. (2011) MatrixDB, the extracellular matrix interaction database. Nucleic Acids Res., 39, D235-D240.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D235-D240
-
-
Chautard, E.1
Fatoux-Ardore, M.2
Ballut, L.3
Thierry-Mieg, N.4
Ricard-Blum, S.5
-
3
-
-
84859208501
-
Protein interaction data curation: The International Molecular Exchange (IMEx) consortium
-
Orchard, S., Kerrien, S., Abbani, S., Aranda, B., Bhate, J., Bidwell, S., Bridge, A., Briganti, L., Brinkman, F., Cesareni, G. et al. (2012) Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. Nat. Methods, 9, 345-350.
-
(2012)
Nat. Methods
, vol.9
, pp. 345-350
-
-
Orchard, S.1
Kerrien, S.2
Abbani, S.3
Aranda, B.4
Bhate, J.5
Bidwell, S.6
Bridge, A.7
Briganti, L.8
Brinkman, F.9
Cesareni, G.10
-
4
-
-
34249107988
-
The minimum information required for reporting a molecular interaction experiment (MIMIx)
-
Orchard, S., Salwinski, L., Kerrien, S., Montecchi-Palazzi, L., Oesterheld, M., Stümpflen, V., Ceol, A., Chatraryamontri, A., Armstrong, J., Woollard, P. et al. (2007) The minimum information required for reporting a molecular interaction experiment (MIMIx). Nat. Biotechnol., 25, 894-898.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 894-898
-
-
Orchard, S.1
Salwinski, L.2
Kerrien, S.3
Montecchi-Palazzi, L.4
Oesterheld, M.5
Stümpflen, V.6
Ceol, A.7
Chatraryamontri, A.8
Armstrong, J.9
Woollard, P.10
-
5
-
-
84891799734
-
The MIntAct project-IntAct as a common curation platform for 11 molecular interaction databases
-
Orchard, S., Ammari, M., Aranda, B., Breuza, L., Briganti, L., Broackes-Carter, F., Campbell, N. H., Chavali, G., Chen, C., Del-Toro, N. et al. (2014) The MIntAct project-IntAct as a common curation platform for 11 molecular interaction databases. Nucleic Acids Res., 42, D358-D363.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D358-D363
-
-
Orchard, S.1
Ammari, M.2
Aranda, B.3
Breuza, L.4
Briganti, L.5
Broackes-Carter, F.6
Campbell, N.H.7
Chavali, G.8
Chen, C.9
Del-Toro, N.10
-
6
-
-
35348904595
-
Comparative genomics of elastin: Sequence analysis of a highly repetitive protein
-
He, D., Chung, M., Chan, E., Alleyne, T., Ha, K. C. H., Miao, M., Stahl, R. J., Keeley, F. W. and Parkinson, J. (2007) Comparative genomics of elastin: Sequence analysis of a highly repetitive protein. Matrix Biol. J. Int. Soc. Matrix Biol., 26, 524-540.
-
(2007)
Matrix Biol. J. Int. Soc. Matrix Biol.
, vol.26
, pp. 524-540
-
-
He, D.1
Chung, M.2
Chan, E.3
Alleyne, T.4
Ha, K.C.H.5
Miao, M.6
Stahl, R.J.7
Keeley, F.W.8
Parkinson, J.9
-
7
-
-
84891778952
-
Laminin-database v. 2.0: An update on laminins in health and neuromuscular disorders
-
Golbert, D. C. F., Santana-Van-Vliet, E., Mundstein, A. S., Calfo, V., Savino, W. and De Vasconcelos, A. T. R. (2014) Laminin-database v. 2.0: an update on laminins in health and neuromuscular disorders. Nucleic Acids Res., 42, D426-D429.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D426-D429
-
-
Golbert, D.C.F.1
Santana-Van-Vliet, E.2
Mundstein, A.S.3
Calfo, V.4
Savino, W.5
De Vasconcelos, A.T.R.6
-
8
-
-
66349112586
-
COLdb, a database linking genetic data to molecular function in fibrillar collagens
-
Bodian, D. L. and Klein, T. E. (2009) COLdb, a database linking genetic data to molecular function in fibrillar collagens. Hum. Mutat., 30, 946-951.
-
(2009)
Hum. Mutat.
, vol.30
, pp. 946-951
-
-
Bodian, D.L.1
Klein, T.E.2
-
9
-
-
84857784445
-
The COL7A1 mutation database
-
Wertheim-Tysarowska, K., Sobczínska-Tomaszewska, A., Kowalewski, C., Skrónski, M., Swiłećkowski, G., Kutkowska-Kázmierczak, A., Wózniak, K. and Bal, J. (2012) The COL7A1 mutation database. Hum. Mutat., 33, 327-331.
-
(2012)
Hum. Mutat.
, vol.33
, pp. 327-331
-
-
Wertheim-Tysarowska, K.1
Sobczínska-Tomaszewska, A.2
Kowalewski, C.3
Skrónski, M.4
Swiłećkowski, G.5
Swiłećkowski, A.6
Wózniak, K.7
Bal, J.8
-
10
-
-
84863880011
-
Heparan sulfate proteoglycans
-
Sarrazin, S., Lamanna, W. C. and Esko, J. D. (2011) Heparan sulfate proteoglycans. Cold Spring Harb. Perspect. Biol., 3, doi:10.1101/cshperspect.a004952.
-
(2011)
Cold Spring Harb. Perspect. Biol.
, vol.3
-
-
Sarrazin, S.1
Lamanna, W.C.2
Esko, J.D.3
-
11
-
-
69249113013
-
The first draft of the endostatin interaction network
-
Faye, C., Chautard, E., Olsen, B. R. and Ricard-Blum, S. (2009) The first draft of the endostatin interaction network. J. Biol. Chem., 284, 22041-22047.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 22041-22047
-
-
Faye, C.1
Chautard, E.2
Olsen, B.R.3
Ricard-Blum, S.4
-
12
-
-
84890050651
-
Extended interaction network of procollagen C-proteinase enhancer-1 in the extracellular matrix
-
Salza, R., Peysselon, F., Chautard, E., Faye, C., Moschcovich, L., Weiss, T., Perrin-Cocon, L., Lotteau, V., Kessler, E. and Ricard-Blum, S. (2014) Extended interaction network of procollagen C-proteinase enhancer-1 in the extracellular matrix. Biochem. J., 457, 137-149.
-
(2014)
Biochem. J.
, vol.457
, pp. 137-149
-
-
Salza, R.1
Peysselon, F.2
Chautard, E.3
Faye, C.4
Moschcovich, L.5
Weiss, T.6
Perrin-Cocon, L.7
Lotteau, V.8
Kessler, E.9
Ricard-Blum, S.10
-
13
-
-
79957592466
-
A systems biology approach for the investigation of the heparin/heparan sulfate interactome
-
Ori, A., Wilkinson, M. C. and Fernig, D. G. (2011) A systems biology approach for the investigation of the heparin/heparan sulfate interactome. J. Biol. Chem., 286, 19892-19904.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 19892-19904
-
-
Ori, A.1
Wilkinson, M.C.2
Fernig, D.G.3
-
14
-
-
84901448041
-
Heparin-protein interactions: From affinity and kinetics to biological roles. Application to an interaction network regulating angiogenesis
-
Peysselon, F. and Ricard-Blum, S. (2014) Heparin-protein interactions: from affinity and kinetics to biological roles. Application to an interaction network regulating angiogenesis. Matrix Biol. J. Int. Soc. Matrix Biol., 35, 73-81.
-
(2014)
Matrix Biol. J. Int. Soc. Matrix Biol.
, vol.35
, pp. 73-81
-
-
Peysselon, F.1
Ricard-Blum, S.2
-
15
-
-
84946090714
-
From binary interactions of glycosaminoglycan and proteoglycans to interaction networks
-
Balazs, EA ed, Matrix Biology Institute, Edgewater, NJ
-
Peysselon, F., Fatoux-Ardore, M. and Ricard-Blum, S. (2012) From binary interactions of glycosaminoglycan and proteoglycans to interaction networks. In: Balazs, EA (ed). Structure and Function of Biomatrix: Control of Cell Behavior and Gene Expression. Matrix Biology Institute, Edgewater, NJ, 5, pp. 139-174.
-
(2012)
Structure and Function of Biomatrix: Control of Cell Behavior and Gene Expression
, vol.5
, pp. 139-174
-
-
Peysselon, F.1
Fatoux-Ardore, M.2
Ricard-Blum, S.3
-
16
-
-
84860644876
-
Toward a systems level view of the ECM and related proteins: A framework for the systematic definition and analysis of biological systems
-
Cromar, G. L., Xiong, X., Chautard, E., Ricard-Blum, S. and Parkinson, J. (2012) Toward a systems level view of the ECM and related proteins: a framework for the systematic definition and analysis of biological systems. Proteins, 80, 1522-1544.
-
(2012)
Proteins
, vol.80
, pp. 1522-1544
-
-
Cromar, G.L.1
Xiong, X.2
Chautard, E.3
Ricard-Blum, S.4
Parkinson, J.5
-
17
-
-
77954958507
-
Interaction networks as a tool to investigate the mechanisms of aging
-
Chautard, E., Thierry-Mieg, N. and Ricard-Blum, S. (2010) Interaction networks as a tool to investigate the mechanisms of aging. Biogerontology, 11, 463-473.
-
(2010)
Biogerontology
, vol.11
, pp. 463-473
-
-
Chautard, E.1
Thierry-Mieg, N.2
Ricard-Blum, S.3
-
18
-
-
84901401937
-
A web-based protein interaction network visualizer
-
Salazar, G. A., Meintjes, A., Mazandu, G. K., Rapanöel, H. A., Akinola, R. O. and Mulder, N. J. (2014) A web-based protein interaction network visualizer. BMC Bioinformatics, 15, doi:10.1186/1471-2105-15-129.
-
(2014)
BMC Bioinformatics
, vol.15
-
-
Salazar, G.A.1
Meintjes, A.2
Mazandu, G.K.3
Rapanöel, H.A.4
Akinola, R.O.5
Mulder, N.J.6
-
19
-
-
84881455143
-
Mentha: A resource for browsing integrated protein-interaction networks
-
Calderone, A., Castagnoli, L. and Cesareni, G. (2013) mentha: a resource for browsing integrated protein-interaction networks. Nat. Methods, 10, 690-691.
-
(2013)
Nat. Methods
, vol.10
, pp. 690-691
-
-
Calderone, A.1
Castagnoli, L.2
Cesareni, G.3
-
20
-
-
84904393259
-
Matricryptins and matrikines: Biologically active fragments of the extracellular matrix
-
Ricard-Blum, S. and Salza, R. (2014) Matricryptins and matrikines: biologically active fragments of the extracellular matrix. Exp. Dermatol., 23, 457-463.
-
(2014)
Exp. Dermatol.
, vol.23
, pp. 457-463
-
-
Ricard-Blum, S.1
Salza, R.2
-
21
-
-
84891783174
-
Activities at the Universal Protein Resource (UniProt)
-
UniProt Consortium. (2014) Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res., 42, D191-D198.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D191-D198
-
-
UniProt Consortium1
-
22
-
-
84876560358
-
The ChEBI reference database and ontology for biologically relevant chemistry: Enhancements for 2013
-
Hastings, J., De Matos, P., Dekker, A., Ennis, M., Harsha, B., Kale, N., Muthukrishnan, V., Owen, G., Turner, S., Williams, M. et al. (2013) The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013. Nucleic Acids Res., 41, D456-D463.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D456-D463
-
-
Hastings, J.1
De Matos, P.2
Dekker, A.3
Ennis, M.4
Harsha, B.5
Kale, N.6
Muthukrishnan, V.7
Owen, G.8
Turner, S.9
Williams, M.10
-
23
-
-
84870311241
-
Towards definition of an ECM parts list: An advance on GO categories
-
Naba, A., Hoersch, S. and Hynes, R. O. (2012) Towards definition of an ECM parts list: an advance on GO categories. Matrix Biol. J. Int. Soc. Matrix Biol., 31, 371-372.
-
(2012)
Matrix Biol. J. Int. Soc. Matrix Biol.
, vol.31
, pp. 371-372
-
-
Naba, A.1
Hoersch, S.2
Hynes, R.O.3
-
24
-
-
84859823928
-
The matrisome: In silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices
-
Naba, A., Clauser, K. R., Hoersch, S., Liu, H., Carr, S. A. and Hynes, R. O. (2012) The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices. Mol. Cell. Proteomics, 11, doi: 10.1074/mcp. M111.014647.
-
(2012)
Mol. Cell. Proteomics
, vol.11
-
-
Naba, A.1
Clauser, K.R.2
Hoersch, S.3
Liu, H.4
Carr, S.A.5
Hynes, R.O.6
-
25
-
-
79959846617
-
PSICQUIC and PSISCORE: Accessing and scoring molecular interactions
-
Aranda, B., Blankenburg, H., Kerrien, S., Brinkman, F. S. L., Ceol, A., Chautard, E., Dana, J. M., De Las Rivas, J., Dumousseau, M., Galeota, E. et al. (2011) PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nat. Methods, 8, 528-529.
-
(2011)
Nat. Methods
, vol.8
, pp. 528-529
-
-
Aranda, B.1
Blankenburg, H.2
Kerrien, S.3
Brinkman, F.S.L.4
Ceol, A.5
Chautard, E.6
Dana, J.M.7
De Las Rivas, J.8
Dumousseau, M.9
Galeota, E.10
-
26
-
-
84859204939
-
The IntAct molecular interaction database in 2012
-
Kerrien, S., Aranda, B., Breuza, L., Bridge, A., Broackes-Carter, F., Chen, C., Duesbury, M., Dumousseau, M., Feuermann, M., Hinz, U. et al. (2012) The IntAct molecular interaction database in 2012. Nucleic Acids Res., 40, D841-D846.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D841-D846
-
-
Kerrien, S.1
Aranda, B.2
Breuza, L.3
Bridge, A.4
Broackes-Carter, F.5
Chen, C.6
Duesbury, M.7
Dumousseau, M.8
Feuermann, M.9
Hinz, U.10
-
27
-
-
84860918589
-
MINT, the molecular interaction database: 2012 update
-
Licata, L., Briganti, L., Peluso, D., Perfetto, L., Iannuccelli, M., Galeota, E., Sacco, F., Palma, A., Nardozza, A. P., Santonico, E. et al. (2012) MINT, the molecular interaction database: 2012 update. Nucleic Acids Res., 40, D857-D861.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D857-D861
-
-
Licata, L.1
Briganti, L.2
Peluso, D.3
Perfetto, L.4
Iannuccelli, M.5
Galeota, E.6
Sacco, F.7
Palma, A.8
Nardozza, A.P.9
Santonico, E.10
-
28
-
-
0347755535
-
The database of interacting proteins: 2004 update
-
Salwinski, L., Miller, C. S., Smith, A. J., Pettit, F. K., Bowie, J. U. and Eisenberg, D. (2004) The Database of Interacting Proteins: 2004 update. Nucleic Acids Res., 32, D449-D451.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D449-D451
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
Pettit, F.K.4
Bowie, J.U.5
Eisenberg, D.6
-
29
-
-
84876581893
-
InnateDB: Systems biology of innate immunity and beyond-recent updates and continuing curation
-
Breuer, K., Foroushani, A. K., Laird, M. R., Chen, C., Sribnaia, A., Lo, R., Winsor, G. L., Hancock, R. E. W., Brinkman, F. S. L. and Lynn, D. J. (2013) InnateDB: systems biology of innate immunity and beyond-recent updates and continuing curation. Nucleic Acids Res., 41, D1228-D1233.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D1228-D1233
-
-
Breuer, K.1
Foroushani, A.K.2
Laird, M.R.3
Chen, C.4
Sribnaia, A.5
Lo, R.6
Winsor, G.L.7
Hancock, R.E.W.8
Brinkman, F.S.L.9
Lynn, D.J.10
-
30
-
-
58149193222
-
Human protein reference database-2009 update
-
Keshava Prasad, T. S., Goel, R., Kandasamy, K., Keerthikumar, S., Kumar, S., Mathivanan, S., Telikicherla, D., Raju, R., Shafreen, B., Venugopal, A. et al. (2009) Human Protein Reference Database-2009 update. Nucleic Acids Res., 37, D767-D772.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D767-D772
-
-
Keshava Prasad, T.S.1
Goel, R.2
Kandasamy, K.3
Keerthikumar, S.4
Kumar, S.5
Mathivanan, S.6
Telikicherla, D.7
Raju, R.8
Shafreen, B.9
Venugopal, A.10
-
31
-
-
77954255613
-
The ontology lookup service: Bigger and better
-
Coté, R., Reisinger, F., Martens, L., Barsnes, H., Vizcaino, J. A. and Hermjakob, H. (2010) The Ontology Lookup Service: bigger and better. Nucleic Acids Res., 38, W155-W160.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W155-W160
-
-
Coté, R.1
Reisinger, F.2
Martens, L.3
Barsnes, H.4
Vizcaino, J.A.5
Hermjakob, H.6
-
32
-
-
84874947727
-
The BioGRID interaction database: 2013 update
-
Chatr-Aryamontri, A., Breitkreutz, B.-J., Heinicke, S., Boucher, L., Winter, A., Stark, C., Nixon, J., Ramage, L., Kolas, N., O'Donnell, L. et al. (2013) The BioGRID interaction database: 2013 update. Nucleic Acids Res., 41, D816-D823.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D816-D823
-
-
Chatr-Aryamontri, A.1
Breitkreutz, B.-J.2
Heinicke, S.3
Boucher, L.4
Winter, A.5
Stark, C.6
Nixon, J.7
Ramage, L.8
Kolas, N.9
O'Donnell, L.10
-
33
-
-
84891782659
-
Pfam: The protein families database
-
Finn, R. D., Bateman, A., Clements, J., Coggill, P., Eberhardt, R. Y., Eddy, S. R., Heger, A., Hetherington, K., Holm, L., Mistry, J. et al. (2014) Pfam: the protein families database. Nucleic Acids Res., 42, D222-D230.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D222-D230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
Eddy, S.R.6
Heger, A.7
Hetherington, K.8
Holm, L.9
Mistry, J.10
-
34
-
-
84858602406
-
InterPro in 2011: New developments in the family and domain prediction database
-
Hunter, S., Jones, P., Mitchell, A., Apweiler, R., Attwood, T. K., Bateman, A., Bernard, T., Binns, D., Bork, P., Burge, S. et al. (2012) InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res., 40, D306-D312.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D306-D312
-
-
Hunter, S.1
Jones, P.2
Mitchell, A.3
Apweiler, R.4
Attwood, T.K.5
Bateman, A.6
Bernard, T.7
Binns, D.8
Bork, P.9
Burge, S.10
-
35
-
-
28444469788
-
Mapping PDB chains to UniProtKB entries
-
Martin, A. C. R. (2005) Mapping PDB chains to UniProtKB entries. Bioinformatics, 21, 4297-4301.
-
(2005)
Bioinformatics
, vol.21
, pp. 4297-4301
-
-
Martin, A.C.R.1
-
36
-
-
84877944199
-
Cytoscape app store
-
Lotia, S., Montojo, J., Dong, Y., Bader, G. D. and Pico, A. R. (2013) Cytoscape app store. Bioinformatics, 29, 1350-1351.
-
(2013)
Bioinformatics
, vol.29
, pp. 1350-1351
-
-
Lotia, S.1
Montojo, J.2
Dong, Y.3
Bader, G.D.4
Pico, A.R.5
-
37
-
-
80855141795
-
D3: Data-driven documents
-
Bostock, M., Ogievetsky, V. and Heer, J. (2011) D3: Data-Driven Documents. IEEE Trans. Vis. Comput. Graph., 17, 2301-2309.
-
(2011)
IEEE Trans. Vis. Comput. Graph.
, vol.17
, pp. 2301-2309
-
-
Bostock, M.1
Ogievetsky, V.2
Heer, J.3
-
38
-
-
84876252208
-
BioJS: An open source JavaScript framework for biological data visualization
-
Gómez, J., Garćia, L. J., Salazar, G. A., Villaveces, J., Gore, S., Garćia, A., Martín, M. J., Launay, G., Alćantara, R., Del-Toro, N. et al. (2013) BioJS: an open source JavaScript framework for biological data visualization. Bioinformatics, 29, 1103-1104.
-
(2013)
Bioinformatics
, vol.29
, pp. 1103-1104
-
-
Gómez, J.1
Garćia, L.J.2
Salazar, G.A.3
Villaveces, J.4
Gore, S.5
Garćia, A.6
Martín, M.J.7
Launay, G.8
Alćantara, R.9
Del-Toro, N.10
|